{"id":"https://openalex.org/W2027263440","doi":"https://doi.org/10.1186/1748-7188-4-12","title":"Breaking the hierarchy - a new cluster selection mechanism for hierarchical clustering methods","display_name":"Breaking the hierarchy - a new cluster selection mechanism for hierarchical clustering methods","publication_year":2009,"publication_date":"2009-10-19","ids":{"openalex":"https://openalex.org/W2027263440","doi":"https://doi.org/10.1186/1748-7188-4-12","mag":"2027263440","pmid":"https://pubmed.ncbi.nlm.nih.gov/19840391"},"language":"en","primary_location":{"id":"doi:10.1186/1748-7188-4-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-4-12","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-4-12","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-4-12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027885520","display_name":"L\u00e1szl\u00f3 A Zahor\u00e1nszky","orcid":null},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"L\u00e1szl\u00f3 A Zahor\u00e1nszky","raw_affiliation_strings":["Department of Computer Science and Information Theory, Budapest University of Technology and Economics, Budapest, Hungary. laszlo.zahoranszky@gmail.com","Department of Computer Science and Information Theory, Budapest University of Technology and Economics, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Theory, Budapest University of Technology and Economics, Budapest, Hungary. laszlo.zahoranszky@gmail.com","institution_ids":["https://openalex.org/I29770179"]},{"raw_affiliation_string":"Department of Computer Science and Information Theory, Budapest University of Technology and Economics, Budapest, Hungary","institution_ids":["https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086872673","display_name":"Gyula Y. Katona","orcid":"https://orcid.org/0000-0002-5119-8681"},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Gyula Y Katona","raw_affiliation_strings":["Department of Computer Science and Information Theory, Budapest University of Technology and Economics, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Theory, Budapest University of Technology and Economics, Budapest, Hungary","institution_ids":["https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008994658","display_name":"P\u00e9ter H\u00e1ri","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P\u00e9ter H\u00e1ri","raw_affiliation_strings":["DELTA Informatika Zrt, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DELTA Informatika Zrt, Budapest, Hungary","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047059933","display_name":"Andr\u00e1s M\u00e1ln\u00e1si\u2010Csizmadia","orcid":"https://orcid.org/0000-0002-2430-8398"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Andr\u00e1s M\u00e1ln\u00e1si-Csizmadia","raw_affiliation_strings":["Department of Biochemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018655950","display_name":"Katharina A. Zweig","orcid":"https://orcid.org/0000-0002-4294-9017"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Katharina A Zweig","raw_affiliation_strings":["Department of Biological Physics, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Physics, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026017430","display_name":"Gergely Zahor\u00e1nszky-K\u00f6halmi","orcid":"https://orcid.org/0000-0002-2534-8770"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"Gergely Zahor\u00e1nszky-K\u00f6halmi","raw_affiliation_strings":["DELTA Informatika Zrt, Budapest, Hungary","Department of Biochemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DELTA Informatika Zrt, Budapest, Hungary","institution_ids":[]},{"raw_affiliation_string":"Department of Biochemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5026017430"],"corresponding_institution_ids":["https://openalex.org/I106118109"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":1.359,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.84414066,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"4","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.5976999998092651,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.5976999998092651,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.07689999788999557,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.038100000470876694,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7688630819320679},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.635295569896698},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6322777271270752},{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.5893812775611877},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5455412864685059},{"id":"https://openalex.org/keywords/single-linkage-clustering","display_name":"Single-linkage clustering","score":0.5214085578918457},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5163818597793579},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4687511920928955},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.4166063666343689},{"id":"https://openalex.org/keywords/fuzzy-clustering","display_name":"Fuzzy clustering","score":0.4150211215019226},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.4142882525920868},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32998228073120117},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2673097252845764},{"id":"https://openalex.org/keywords/cure-data-clustering-algorithm","display_name":"CURE data clustering algorithm","score":0.25998783111572266},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2153552770614624},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08152961730957031}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7688630819320679},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.635295569896698},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6322777271270752},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.5893812775611877},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5455412864685059},{"id":"https://openalex.org/C22648726","wikidata":"https://www.wikidata.org/wiki/Q7523744","display_name":"Single-linkage clustering","level":5,"score":0.5214085578918457},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5163818597793579},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4687511920928955},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.4166063666343689},{"id":"https://openalex.org/C17212007","wikidata":"https://www.wikidata.org/wiki/Q5511111","display_name":"Fuzzy clustering","level":3,"score":0.4150211215019226},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.4142882525920868},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32998228073120117},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2673097252845764},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.25998783111572266},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2153552770614624},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08152961730957031},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1748-7188-4-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-4-12","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-4-12","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:19840391","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19840391","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:doaj.org/article:24edc8318e394b98b626904e5f98c8e0","is_oa":false,"landing_page_url":"https://doaj.org/article/24edc8318e394b98b626904e5f98c8e0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 4, Iss 1, p 12 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2774311","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2774311","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms Mol Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1748-7188-4-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-4-12","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-4-12","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1660469434","display_name":null,"funder_award_id":"67651","funder_id":"https://openalex.org/F4320322193","funder_display_name":"Nemzeti Kutat\u00e1si \u00e9s Technol\u00f3giai Hivatal"},{"id":"https://openalex.org/G4204652143","display_name":null,"funder_award_id":"OTKA 67651","funder_id":"https://openalex.org/F4320322193","funder_display_name":"Nemzeti Kutat\u00e1si \u00e9s Technol\u00f3giai Hivatal"},{"id":"https://openalex.org/G4547255915","display_name":null,"funder_award_id":"OTKA 67651","funder_id":"https://openalex.org/F4320321994","funder_display_name":"Hungarian Scientific Research Fund"}],"funders":[{"id":"https://openalex.org/F4320321038","display_name":"Fonds National de la Recherche Luxembourg","ror":"https://ror.org/039z13y21"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321994","display_name":"Hungarian Scientific Research Fund","ror":"https://ror.org/00v349e63"},{"id":"https://openalex.org/F4320322193","display_name":"Nemzeti Kutat\u00e1si \u00e9s Technol\u00f3giai Hivatal","ror":"https://ror.org/03g2am276"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2027263440.pdf","grobid_xml":"https://content.openalex.org/works/W2027263440.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1486817521","https://openalex.org/W1644997609","https://openalex.org/W1971421925","https://openalex.org/W1977556410","https://openalex.org/W1990435776","https://openalex.org/W2000376564","https://openalex.org/W2005008560","https://openalex.org/W2005685204","https://openalex.org/W2011039300","https://openalex.org/W2016381774","https://openalex.org/W2023954353","https://openalex.org/W2036126869","https://openalex.org/W2039174451","https://openalex.org/W2089417393","https://openalex.org/W2089923519","https://openalex.org/W2096729078","https://openalex.org/W2112090702","https://openalex.org/W2151952572","https://openalex.org/W2158024647","https://openalex.org/W2159675211","https://openalex.org/W2164928285","https://openalex.org/W2165533101","https://openalex.org/W2169404653","https://openalex.org/W2171030481","https://openalex.org/W2171103562","https://openalex.org/W2172049947","https://openalex.org/W2176516200","https://openalex.org/W2319929750","https://openalex.org/W3152026761","https://openalex.org/W4229995924","https://openalex.org/W4285719527","https://openalex.org/W6889001390"],"related_works":["https://openalex.org/W2488882714","https://openalex.org/W2357582197","https://openalex.org/W4285613040","https://openalex.org/W1985101567","https://openalex.org/W2534504385","https://openalex.org/W2318830132","https://openalex.org/W4312222690","https://openalex.org/W126354040","https://openalex.org/W2307746788","https://openalex.org/W4231226332"],"abstract_inverted_index":{"BACKGROUND:":[0],"Hierarchical":[1],"clustering":[2,53,134,212,265,294],"methods":[3,266],"like":[4,196],"Ward's":[5,67],"method":[6,54,187,209,258,281,285],"have":[7],"been":[8,116],"used":[9,72],"since":[10],"decades":[11],"to":[12,21,32,153,221,262,267,298],"understand":[13],"biological":[14,103,307],"and":[15,83,104,198,217,246,308],"chemical":[16,105,309],"data":[17,27,74,106,161,190,233,310],"sets.":[18,311],"In":[19,46,122,205],"order":[20],"get":[22],"a":[23,41,48,127,167,175,192,211,222,270,291],"partition":[24],"of":[25,37,51,94,156,179,185,194,200],"the":[26,38,131,154,170,208,231,257,284],"set,":[28],"it":[29,69,84],"is":[30,81,162,172,303],"necessary":[31],"choose":[33],"an":[34],"optimal":[35,101],"level":[36,43,112,132,147,271],"hierarchy":[39],"by":[40,57,286],"so-called":[42],"selection":[44,113,129,135,171,280],"algorithm.":[45],"2005,":[47],"new":[49,278,292],"kind":[50],"hierarchical":[52,264],"was":[55],"introduced":[56],"Palla":[58,287],"et":[59,288],"al.":[60,289],"that":[61,235,296],"differs":[62],"in":[63,96,148,250],"two":[64,189],"ways":[65],"from":[66,145],"method:":[68],"can":[70,85,142,228,259],"be":[71,143,260],"on":[73,75,174,188],"which":[76,302],"no":[77,111],"full":[78],"similarity":[79,168],"matrix":[80],"defined":[82],"produce":[86],"overlapping":[87,300],"clusters,":[88,301],"i.e.,":[89],"allow":[90,268],"for":[91,102,118,230,269,306],"multiple":[92],"membership":[93],"items":[95],"clusters.":[97,157,181],"These":[98],"features":[99],"are":[100],"sets":[107],"but":[108],"until":[109],"now":[110],"algorithm":[114],"has":[115],"published":[117],"this":[119,123],"method.":[120],"RESULTS:":[121],"article":[124],"we":[125,227],"provide":[126],"general":[128],"scheme,":[130],"independent":[133,272],"method,":[136],"called":[137],"LInCS.":[138],"With":[139],"it,":[140],"clusters":[141,245],"selected":[144],"any":[146],"quadratic":[149],"time":[150],"with":[151,166,213,283],"respect":[152],"number":[155],"Since":[158],"hierarchically":[159],"clustered":[160],"not":[163],"necessarily":[164],"associated":[165],"measure,":[169],"based":[173],"graph":[176,237],"theoretic":[177,238],"notion":[178],"cohesive":[180],"We":[182,253],"present":[183],"results":[184],"our":[186,236,277],"sets,":[191],"set":[193,199,234],"drug":[195],"molecules":[197],"protein-protein":[201],"interaction":[202],"(PPI)":[203],"data.":[204],"both":[206],"cases":[207],"provides":[210,290],"very":[214],"good":[215],"sensitivity":[216],"specificity":[218],"values":[219],"according":[220],"given":[223],"reference":[224],"clustering.":[225],"Moreover,":[226],"show":[229],"PPI":[232],"cohesiveness":[239],"measure":[240],"indeed":[241],"chooses":[242],"biologically":[243],"homogeneous":[244],"disregards":[247],"inhomogeneous":[248],"ones":[249],"most":[251],"cases.":[252],"finally":[254],"discuss":[255],"how":[256],"generalized":[261],"other":[263],"cluster":[273,279],"selection.":[274],"CONCLUSION:":[275],"Using":[276],"together":[282],"interesting":[293],"mechanism":[295],"allows":[297],"compute":[299],"especially":[304],"valuable":[305]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
