{"id":"https://openalex.org/W2118421198","doi":"https://doi.org/10.1186/1687-4153-2014-3","title":"Tracking of time-varying genomic regulatory networks with a LASSO-Kalman smoother","display_name":"Tracking of time-varying genomic regulatory networks with a LASSO-Kalman smoother","publication_year":2014,"publication_date":"2014-02-12","ids":{"openalex":"https://openalex.org/W2118421198","doi":"https://doi.org/10.1186/1687-4153-2014-3","mag":"2118421198","pmid":"https://pubmed.ncbi.nlm.nih.gov/24517200"},"language":"en","primary_location":{"id":"doi:10.1186/1687-4153-2014-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2014-3","pdf_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2014-3","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2014-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102944872","display_name":"Jehandad Khan","orcid":"https://orcid.org/0000-0003-4479-1871"},"institutions":[{"id":"https://openalex.org/I44265643","display_name":"Rowan University","ror":"https://ror.org/049v69k10","country_code":"US","type":"education","lineage":["https://openalex.org/I44265643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jehandad Khan","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, USA","institution_ids":["https://openalex.org/I44265643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041401460","display_name":"Nidhal Bouaynaya","orcid":"https://orcid.org/0000-0002-8833-8414"},"institutions":[{"id":"https://openalex.org/I44265643","display_name":"Rowan University","ror":"https://ror.org/049v69k10","country_code":"US","type":"education","lineage":["https://openalex.org/I44265643"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nidhal Bouaynaya","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ 08028, USA. bouaynaya@rowan.edu","Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ 08028, USA. bouaynaya@rowan.edu","institution_ids":["https://openalex.org/I44265643"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, USA","institution_ids":["https://openalex.org/I44265643"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091907435","display_name":"Hassan M. Fathallah\u2010Shaykh","orcid":"https://orcid.org/0000-0002-2690-7685"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hassan M Fathallah-Shaykh","raw_affiliation_strings":["Department of Biomedical Engineering, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","Department of Electrical and Computer Engineering, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","Department of Mathematics, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","Department of Neurology, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Mathematics, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Neurology, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041401460"],"corresponding_institution_ids":["https://openalex.org/I44265643"],"apc_list":null,"apc_paid":null,"fwci":0.78,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.70867068,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2014","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.74630206823349},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6837189793586731},{"id":"https://openalex.org/keywords/kalman-filter","display_name":"Kalman filter","score":0.6519638299942017},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5094276070594788},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.502650260925293},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3418278992176056},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.07629024982452393}],"concepts":[{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.74630206823349},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6837189793586731},{"id":"https://openalex.org/C157286648","wikidata":"https://www.wikidata.org/wiki/Q846780","display_name":"Kalman filter","level":2,"score":0.6519638299942017},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5094276070594788},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.502650260925293},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3418278992176056},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.07629024982452393},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1687-4153-2014-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2014-3","pdf_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2014-3","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},{"id":"pmid:24517200","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24517200","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP journal on bioinformatics & systems biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.646.6631","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.646.6631","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bsb.eurasipjournals.com/content/pdf/1687-4153-2014-3.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2968399","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3974129","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1687-4153-2014-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2014-3","pdf_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2014-3","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G1116064496","display_name":null,"funder_award_id":"CRI CNS-0855248","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1608977186","display_name":null,"funder_award_id":"MRI CNS\u20100619069","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2103320331","display_name":null,"funder_award_id":"CNS-0619069","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2730430987","display_name":null,"funder_award_id":"MRI-R2","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3228729873","display_name":"MRI-R2:  Acquisition of an Integrated Instrument for Computational Research and Education","funder_award_id":"0959124","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3526930933","display_name":null,"funder_award_id":"EPS\u20100701890","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3607726238","display_name":"Upgrading to a Sustainable Infrastructure for Research Computing","funder_award_id":"0963249","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4001564037","display_name":null,"funder_award_id":"R01GM096191","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4003630362","display_name":"Collaborative Research:  Cyberinfrastructure for Transformational Scientific Discovery in Arkansas and West Virginia  (CI TRAIN)","funder_award_id":"0918970","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4310434366","display_name":"RII: Arkansas ASSET Initiative","funder_award_id":"0701890","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4318806371","display_name":null,"funder_award_id":"0918970","funder_id":"https://openalex.org/F4320310432","funder_display_name":"Arkansas Science and Technology Authority"},{"id":"https://openalex.org/G476819940","display_name":null,"funder_award_id":"0918970","funder_id":"https://openalex.org/F4320334023","funder_display_name":"Arkansas High Performance Computing Center, University of Arkansas"},{"id":"https://openalex.org/G4843012294","display_name":null,"funder_award_id":"EPS#0918970","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5198670669","display_name":"CRI: II-EN: Stream Computing for Research and Education in Science and Engineering","funder_award_id":"0855248","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5375082600","display_name":"IRES: U.S.-France Cooperative Research in Engineering Innovative Software Systems with Applications to Maritime Transportation Logistics","funder_award_id":"0729792","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6664001890","display_name":null,"funder_award_id":"OISE\u20100729792","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7554508995","display_name":"Development of an Interdisciplinary Arkansas Emulation Laboratory","funder_award_id":"0619069","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7915835048","display_name":null,"funder_award_id":"MRI-R2 #0959124","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8802296821","display_name":null,"funder_award_id":"0959124","funder_id":"https://openalex.org/F4320334023","funder_display_name":"Arkansas High Performance Computing Center, University of Arkansas"},{"id":"https://openalex.org/G8829182357","display_name":null,"funder_award_id":"0963249","funder_id":"https://openalex.org/F4320334023","funder_display_name":"Arkansas High Performance Computing Center, University of Arkansas"},{"id":"https://openalex.org/G945394005","display_name":null,"funder_award_id":"CNS-0855248","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310432","display_name":"Arkansas Science and Technology Authority","ror":"https://ror.org/01rqt6394"},{"id":"https://openalex.org/F4320316439","display_name":"Rowan University","ror":"https://ror.org/049v69k10"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334023","display_name":"Arkansas High Performance Computing Center, University of Arkansas","ror":null},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337370","display_name":"Office of International Science and Engineering","ror":"https://ror.org/01k638r21"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118421198.pdf","grobid_xml":"https://content.openalex.org/works/W2118421198.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W70003281","https://openalex.org/W1537465881","https://openalex.org/W1593373597","https://openalex.org/W1595971114","https://openalex.org/W1758610246","https://openalex.org/W1949211959","https://openalex.org/W1967042859","https://openalex.org/W1970208077","https://openalex.org/W1971224531","https://openalex.org/W1973807737","https://openalex.org/W2007221293","https://openalex.org/W2009001778","https://openalex.org/W2017986542","https://openalex.org/W2043313202","https://openalex.org/W2044646840","https://openalex.org/W2045893916","https://openalex.org/W2060489532","https://openalex.org/W2061027801","https://openalex.org/W2061968063","https://openalex.org/W2070672503","https://openalex.org/W2084018951","https://openalex.org/W2098602977","https://openalex.org/W2100300938","https://openalex.org/W2102291607","https://openalex.org/W2103450980","https://openalex.org/W2103985488","https://openalex.org/W2105581244","https://openalex.org/W2108421561","https://openalex.org/W2109384743","https://openalex.org/W2109944603","https://openalex.org/W2109957730","https://openalex.org/W2113273949","https://openalex.org/W2116208407","https://openalex.org/W2118142321","https://openalex.org/W2119862467","https://openalex.org/W2121695897","https://openalex.org/W2122548617","https://openalex.org/W2125631472","https://openalex.org/W2129505753","https://openalex.org/W2131752723","https://openalex.org/W2135046866","https://openalex.org/W2135784723","https://openalex.org/W2142277116","https://openalex.org/W2145096794","https://openalex.org/W2152144380","https://openalex.org/W2154454113","https://openalex.org/W2157523980","https://openalex.org/W2159675211","https://openalex.org/W2160533336","https://openalex.org/W2171030481","https://openalex.org/W2171075378","https://openalex.org/W2325676733","https://openalex.org/W2611370172","https://openalex.org/W2790374560","https://openalex.org/W2794413559","https://openalex.org/W4205390861","https://openalex.org/W4249591922"],"related_works":["https://openalex.org/W4256576576","https://openalex.org/W3090384609","https://openalex.org/W3194013178","https://openalex.org/W4249086404","https://openalex.org/W4236464082","https://openalex.org/W2084086966","https://openalex.org/W2212119398","https://openalex.org/W2790019364","https://openalex.org/W4288780803","https://openalex.org/W2187089732"],"abstract_inverted_index":{":":[0],"It":[1],"is":[2],"widely":[3],"accepted":[4],"that":[5,48,187],"cellular":[6],"requirements":[7],"and":[8,26,152],"environmental":[9],"conditions":[10],"dictate":[11],"the":[12,19,70,85,95,117,123,129,141,144,156,164,172,176,180,203],"architecture":[13],"of":[14,44,72,80,98,128,143,158,179,202],"genetic":[15,45,74,145],"regulatory":[16,23,146],"networks.":[17],"Nonetheless,":[18],"status":[20],"quo":[21],"in":[22,54,108],"network":[24,31,55,86,130],"modeling":[25],"analysis":[27],"assumes":[28],"an":[29],"invariant":[30],"topology":[32],"over":[33],"time.":[34],"In":[35],"this":[36],"paper,":[37],"we":[38,115],"refocus":[39],"on":[40,69],"a":[41,66,77,89,109],"dynamic":[42],"perspective":[43],"networks,":[46,75,147],"one":[47],"can":[49],"uncover":[50],"substantial":[51],"topological":[52],"changes":[53],"structure":[56],"during":[57,175,198],"biological":[58],"processes":[59],"such":[60],"as":[61,88],"developmental":[62,200],"growth.":[63],"We":[64,93,170],"propose":[65],"novel":[67],"outlook":[68],"inference":[71],"time-varying":[73,173],"from":[76],"limited":[78,96],"number":[79,97],"noisy":[81],"observations,":[82],"by":[83,105,140,166],"formulating":[84],"estimation":[87,165],"target":[90],"tracking":[91,107],"problem.":[92],"overcome":[94],"observations":[99],"(small":[100],"n":[101],"large":[102],"p":[103],"problem)":[104],"performing":[106],"compressed":[110],"domain.":[111],"Assuming":[112],"linear":[113],"dynamics,":[114],"derive":[116],"LASSO-Kalman":[118],"smoother,":[119],"which":[120],"recursively":[121],"computes":[122],"minimum":[124],"mean-square":[125],"sparse":[126],"estimate":[127],"connectivity":[131],"at":[132],"each":[133],"time":[134],"point.":[135],"The":[136,161,183],"LASSO":[137],"operator,":[138],"motivated":[139],"sparsity":[142],"allows":[148],"simultaneous":[149],"signal":[150],"recovery":[151],"compression,":[153],"thereby":[154],"reducing":[155],"amount":[157],"required":[159],"observations.":[160,169],"smoothing":[162],"improves":[163],"incorporating":[167],"all":[168],"track":[171],"networks":[174,185],"life":[177],"cycle":[178],"Drosophila":[181],"melanogaster.":[182],"recovered":[184],"show":[186],"few":[188],"genes":[189],"are":[190,194],"permanent,":[191],"whereas":[192],"most":[193],"transient,":[195],"acting":[196],"only":[197],"specific":[199],"phases":[201],"organism.":[204]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
