{"id":"https://openalex.org/W2118421198","doi":"https://doi.org/10.1186/1687-4153-2014-3","title":"Tracking of time-varying genomic regulatory networks with a LASSO-Kalman smoother","display_name":"Tracking of time-varying genomic regulatory networks with a LASSO-Kalman smoother","publication_year":2014,"publication_date":"2014-02-12","ids":{"openalex":"https://openalex.org/W2118421198","doi":"https://doi.org/10.1186/1687-4153-2014-3","mag":"2118421198","pmid":"https://pubmed.ncbi.nlm.nih.gov/24517200"},"language":"en","primary_location":{"id":"doi:10.1186/1687-4153-2014-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2014-3","pdf_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2014-3","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2014-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102944872","display_name":"Jehandad Khan","orcid":"https://orcid.org/0000-0003-4479-1871"},"institutions":[{"id":"https://openalex.org/I44265643","display_name":"Rowan University","ror":"https://ror.org/049v69k10","country_code":"US","type":"education","lineage":["https://openalex.org/I44265643"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jehandad Khan","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ 08028, USA","Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ 08028, USA","institution_ids":["https://openalex.org/I44265643"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, USA","institution_ids":["https://openalex.org/I44265643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041401460","display_name":"Nidhal Bouaynaya","orcid":"https://orcid.org/0000-0002-8833-8414"},"institutions":[{"id":"https://openalex.org/I44265643","display_name":"Rowan University","ror":"https://ror.org/049v69k10","country_code":"US","type":"education","lineage":["https://openalex.org/I44265643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nidhal Bouaynaya","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ 08028, USA. bouaynaya@rowan.edu","Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ 08028, USA. bouaynaya@rowan.edu","institution_ids":["https://openalex.org/I44265643"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ, 08028, USA","institution_ids":["https://openalex.org/I44265643"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091907435","display_name":"Hassan M. Fathallah\u2010Shaykh","orcid":"https://orcid.org/0000-0002-2690-7685"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hassan M Fathallah-Shaykh","raw_affiliation_strings":["Department of Neurology, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA"],"affiliations":[{"raw_affiliation_string":"Department of Neurology, University of Alabama at Birmingham, 1720 2nd Ave S, Birmingham, AL, 35233, USA","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5102944872"],"corresponding_institution_ids":["https://openalex.org/I44265643"],"apc_list":null,"apc_paid":null,"fwci":0.8556,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.73421049,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2014","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.74630206823349},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6837189793586731},{"id":"https://openalex.org/keywords/kalman-filter","display_name":"Kalman filter","score":0.6519638299942017},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5094276070594788},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.502650260925293},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3418278992176056},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.07629024982452393}],"concepts":[{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.74630206823349},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6837189793586731},{"id":"https://openalex.org/C157286648","wikidata":"https://www.wikidata.org/wiki/Q846780","display_name":"Kalman filter","level":2,"score":0.6519638299942017},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5094276070594788},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.502650260925293},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3418278992176056},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.07629024982452393},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1687-4153-2014-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2014-3","pdf_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2014-3","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},{"id":"pmid:24517200","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24517200","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP journal on bioinformatics & systems biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.646.6631","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.646.6631","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bsb.eurasipjournals.com/content/pdf/1687-4153-2014-3.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2968399","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3974129","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1687-4153-2014-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2014-3","pdf_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2014-3","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G1116064496","display_name":null,"funder_award_id":"CRI CNS-0855248","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G208547600","display_name":null,"funder_award_id":"918970","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2103320331","display_name":null,"funder_award_id":"CNS-0619069","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2730430987","display_name":null,"funder_award_id":"MRI-R2","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2853826338","display_name":null,"funder_award_id":"MRI CNS-0619069","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3228729873","display_name":null,"funder_award_id":"0959124","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3607726238","display_name":null,"funder_award_id":"0963249","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4001564037","display_name":null,"funder_award_id":"R01GM096191","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4003630362","display_name":null,"funder_award_id":"0918970","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4142534023","display_name":null,"funder_award_id":"#0963249","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4310434366","display_name":null,"funder_award_id":"0701890","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4318806371","display_name":null,"funder_award_id":"0918970","funder_id":"https://openalex.org/F4320310432","funder_display_name":"Arkansas Science and Technology Authority"},{"id":"https://openalex.org/G4359693134","display_name":null,"funder_award_id":"NIGMS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G476819940","display_name":null,"funder_award_id":"0918970","funder_id":"https://openalex.org/F4320334023","funder_display_name":"Arkansas High Performance Computing Center, University of Arkansas"},{"id":"https://openalex.org/G5198670669","display_name":"CRI: II-EN: Stream Computing for Research and Education in Science and Engineering","funder_award_id":"0855248","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5375082600","display_name":"IRES: U.S.-France Cooperative Research in Engineering Innovative Software Systems with Applications to Maritime Transportation Logistics","funder_award_id":"0729792","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5691131381","display_name":null,"funder_award_id":"EPS-0918970","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6582690294","display_name":null,"funder_award_id":"EPS-0701890","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7158373358","display_name":null,"funder_award_id":"#0918970","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7554508995","display_name":"Development of an Interdisciplinary Arkansas Emulation Laboratory","funder_award_id":"0619069","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7915835048","display_name":null,"funder_award_id":"MRI-R2 #0959124","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8345619687","display_name":null,"funder_award_id":"OISE-0729792","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8802296821","display_name":null,"funder_award_id":"0959124","funder_id":"https://openalex.org/F4320334023","funder_display_name":"Arkansas High Performance Computing Center, University of Arkansas"},{"id":"https://openalex.org/G8818526012","display_name":null,"funder_award_id":"959124","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8829182357","display_name":null,"funder_award_id":"0963249","funder_id":"https://openalex.org/F4320334023","funder_display_name":"Arkansas High Performance Computing Center, University of Arkansas"},{"id":"https://openalex.org/G945394005","display_name":null,"funder_award_id":"CNS-0855248","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G991106983","display_name":null,"funder_award_id":"#0959124","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310432","display_name":"Arkansas Science and Technology Authority","ror":"https://ror.org/01rqt6394"},{"id":"https://openalex.org/F4320316439","display_name":"Rowan University","ror":"https://ror.org/049v69k10"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334023","display_name":"Arkansas High Performance Computing Center, University of Arkansas","ror":null},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337370","display_name":"Office of International Science and Engineering","ror":"https://ror.org/01k638r21"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118421198.pdf","grobid_xml":"https://content.openalex.org/works/W2118421198.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W70003281","https://openalex.org/W1537465881","https://openalex.org/W1593373597","https://openalex.org/W1595971114","https://openalex.org/W1758610246","https://openalex.org/W1949211959","https://openalex.org/W1967042859","https://openalex.org/W1970208077","https://openalex.org/W1971224531","https://openalex.org/W1973807737","https://openalex.org/W2007221293","https://openalex.org/W2009001778","https://openalex.org/W2017986542","https://openalex.org/W2043313202","https://openalex.org/W2044646840","https://openalex.org/W2045893916","https://openalex.org/W2060489532","https://openalex.org/W2061027801","https://openalex.org/W2061968063","https://openalex.org/W2070672503","https://openalex.org/W2084018951","https://openalex.org/W2098602977","https://openalex.org/W2100300938","https://openalex.org/W2102291607","https://openalex.org/W2103450980","https://openalex.org/W2103985488","https://openalex.org/W2105581244","https://openalex.org/W2108421561","https://openalex.org/W2109384743","https://openalex.org/W2109944603","https://openalex.org/W2109957730","https://openalex.org/W2113273949","https://openalex.org/W2116208407","https://openalex.org/W2118142321","https://openalex.org/W2119862467","https://openalex.org/W2121695897","https://openalex.org/W2122548617","https://openalex.org/W2125631472","https://openalex.org/W2129505753","https://openalex.org/W2131752723","https://openalex.org/W2135046866","https://openalex.org/W2135784723","https://openalex.org/W2142277116","https://openalex.org/W2145096794","https://openalex.org/W2152144380","https://openalex.org/W2154454113","https://openalex.org/W2157523980","https://openalex.org/W2159675211","https://openalex.org/W2160533336","https://openalex.org/W2171030481","https://openalex.org/W2171075378","https://openalex.org/W2325676733","https://openalex.org/W2611370172","https://openalex.org/W2790374560","https://openalex.org/W2794413559","https://openalex.org/W4205390861","https://openalex.org/W4249591922"],"related_works":["https://openalex.org/W4256576576","https://openalex.org/W3090384609","https://openalex.org/W3194013178","https://openalex.org/W4249086404","https://openalex.org/W4236464082","https://openalex.org/W2084086966","https://openalex.org/W2212119398","https://openalex.org/W2790019364","https://openalex.org/W4288780803","https://openalex.org/W2187089732"],"abstract_inverted_index":{":":[0],"It":[1],"is":[2],"widely":[3],"accepted":[4],"that":[5,48,187],"cellular":[6],"requirements":[7],"and":[8,26,152],"environmental":[9],"conditions":[10],"dictate":[11],"the":[12,19,70,85,95,117,123,129,141,144,156,164,172,176,180,203],"architecture":[13],"of":[14,44,72,80,98,128,143,158,179,202],"genetic":[15,45,74,145],"regulatory":[16,23,146],"networks.":[17],"Nonetheless,":[18],"status":[20],"quo":[21],"in":[22,54,108],"network":[24,31,55,86,130],"modeling":[25],"analysis":[27],"assumes":[28],"an":[29],"invariant":[30],"topology":[32],"over":[33],"time.":[34],"In":[35],"this":[36],"paper,":[37],"we":[38,115],"refocus":[39],"on":[40,69],"a":[41,66,77,89,109],"dynamic":[42],"perspective":[43],"networks,":[46,75,147],"one":[47],"can":[49],"uncover":[50],"substantial":[51],"topological":[52],"changes":[53],"structure":[56],"during":[57,175,198],"biological":[58],"processes":[59],"such":[60],"as":[61,88],"developmental":[62,200],"growth.":[63],"We":[64,93,170],"propose":[65],"novel":[67],"outlook":[68],"inference":[71],"time-varying":[73,173],"from":[76],"limited":[78,96],"number":[79,97],"noisy":[81],"observations,":[82],"by":[83,105,140,166],"formulating":[84],"estimation":[87,165],"target":[90],"tracking":[91,107],"problem.":[92],"overcome":[94],"observations":[99],"(small":[100],"n":[101],"large":[102],"p":[103],"problem)":[104],"performing":[106],"compressed":[110],"domain.":[111],"Assuming":[112],"linear":[113],"dynamics,":[114],"derive":[116],"LASSO-Kalman":[118],"smoother,":[119],"which":[120],"recursively":[121],"computes":[122],"minimum":[124],"mean-square":[125],"sparse":[126],"estimate":[127],"connectivity":[131],"at":[132],"each":[133],"time":[134],"point.":[135],"The":[136,161,183],"LASSO":[137],"operator,":[138],"motivated":[139],"sparsity":[142],"allows":[148],"simultaneous":[149],"signal":[150],"recovery":[151],"compression,":[153],"thereby":[154],"reducing":[155],"amount":[157],"required":[159],"observations.":[160,169],"smoothing":[162],"improves":[163],"incorporating":[167],"all":[168],"track":[171],"networks":[174,185],"life":[177],"cycle":[178],"Drosophila":[181],"melanogaster.":[182],"recovered":[184],"show":[186],"few":[188],"genes":[189],"are":[190,194],"permanent,":[191],"whereas":[192],"most":[193],"transient,":[195],"acting":[196],"only":[197],"specific":[199],"phases":[201],"organism.":[204]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
