{"id":"https://openalex.org/W2123075391","doi":"https://doi.org/10.1186/1687-4153-2014-1","title":"A 2D graphical representation of the sequences of DNA based on triplets and its application","display_name":"A 2D graphical representation of the sequences of DNA based on triplets and its application","publication_year":2014,"publication_date":"2014-01-02","ids":{"openalex":"https://openalex.org/W2123075391","doi":"https://doi.org/10.1186/1687-4153-2014-1","mag":"2123075391","pmid":"https://pubmed.ncbi.nlm.nih.gov/24383852"},"language":"en","primary_location":{"id":"doi:10.1186/1687-4153-2014-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2014-1","pdf_url":"https://bsb-eurasipjournals.springeropen.com/counter/pdf/10.1186/1687-4153-2014-1","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://bsb-eurasipjournals.springeropen.com/counter/pdf/10.1186/1687-4153-2014-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110971594","display_name":"Sai Zou","orcid":null},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sai Zou","raw_affiliation_strings":["School of Software Engineering, Chongqing College of Electronic Engineering, Chongqing, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Chongqing College of Electronic Engineering, Chongqing, People's Republic of China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100710637","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0002-5065-8447"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["School of Software Engineering, Chongqing College of Electronic Engineering, Chongqing 401331, People's Republic of China. phd.leiwang@gmail.com","School of Software Engineering, Chongqing College of Electronic Engineering, Chongqing, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Chongqing College of Electronic Engineering, Chongqing 401331, People's Republic of China. phd.leiwang@gmail.com","institution_ids":["https://openalex.org/I158842170"]},{"raw_affiliation_string":"School of Software Engineering, Chongqing College of Electronic Engineering, Chongqing, People's Republic of China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100377335","display_name":"Junfeng Wang","orcid":"https://orcid.org/0000-0002-9608-6851"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junfeng Wang","raw_affiliation_strings":["School of Software Engineering, Chongqing College of Electronic Engineering, Chongqing, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Chongqing College of Electronic Engineering, Chongqing, People's Republic of China","institution_ids":["https://openalex.org/I158842170"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I158842170"],"apc_list":null,"apc_paid":null,"fwci":0.9772,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.75319178,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2014","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6553456783294678},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.6172609925270081},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5897777080535889},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5714648962020874},{"id":"https://openalex.org/keywords/plot","display_name":"Plot (graphics)","score":0.4794991612434387},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.468289315700531},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.455133318901062},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4537931978702545},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4503730833530426},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4461553692817688},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.42049479484558105},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.41267716884613037},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3319453001022339},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3102113604545593},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21102672815322876},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17278584837913513},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16860762238502502},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.10685610771179199}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6553456783294678},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.6172609925270081},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5897777080535889},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5714648962020874},{"id":"https://openalex.org/C167651023","wikidata":"https://www.wikidata.org/wiki/Q1474611","display_name":"Plot (graphics)","level":2,"score":0.4794991612434387},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.468289315700531},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.455133318901062},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4537931978702545},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4503730833530426},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4461553692817688},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.42049479484558105},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.41267716884613037},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3319453001022339},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3102113604545593},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21102672815322876},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17278584837913513},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16860762238502502},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.10685610771179199},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1687-4153-2014-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2014-1","pdf_url":"https://bsb-eurasipjournals.springeropen.com/counter/pdf/10.1186/1687-4153-2014-1","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},{"id":"pmid:24383852","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24383852","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP journal on bioinformatics & systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2898044","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3896961","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1687-4153-2014-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2014-1","pdf_url":"https://bsb-eurasipjournals.springeropen.com/counter/pdf/10.1186/1687-4153-2014-1","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123075391.pdf","grobid_xml":"https://content.openalex.org/works/W2123075391.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1963733856","https://openalex.org/W1974606330","https://openalex.org/W1977769297","https://openalex.org/W1993378001","https://openalex.org/W1996057835","https://openalex.org/W2002587562","https://openalex.org/W2003721721","https://openalex.org/W2030734229","https://openalex.org/W2035588116","https://openalex.org/W2037121588","https://openalex.org/W2043276263","https://openalex.org/W2051653832","https://openalex.org/W2054047422","https://openalex.org/W2059595348","https://openalex.org/W2076938808","https://openalex.org/W2083522796","https://openalex.org/W2088851448","https://openalex.org/W2094296386","https://openalex.org/W2101465146","https://openalex.org/W2121540501","https://openalex.org/W2130684305","https://openalex.org/W2133504643","https://openalex.org/W2134403677","https://openalex.org/W2137866800","https://openalex.org/W2171049767","https://openalex.org/W2171490488","https://openalex.org/W2172236671","https://openalex.org/W2185237651","https://openalex.org/W2186899574","https://openalex.org/W2187942795","https://openalex.org/W2216181701","https://openalex.org/W2916375170","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2897156099","https://openalex.org/W1981338710","https://openalex.org/W2245242553","https://openalex.org/W3041711126","https://openalex.org/W4390591638","https://openalex.org/W2606639950","https://openalex.org/W1976624272","https://openalex.org/W3121105173","https://openalex.org/W4386058320","https://openalex.org/W2995364773"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,25,61],"first":[4],"present":[5],"a":[6,16,27,38,42,55,63],"new":[7],"concept":[8],"of":[9,22,49,59,70,79,84,87,93],"'weight'":[10],"for":[11,19,32],"64":[12],"triplets":[13],"and":[14],"define":[15],"different":[17],"weight":[18],"each":[20],"kind":[21],"triplet.":[23],"Then,":[24],"give":[26],"novel":[28,64],"2D":[29],"graphical":[30],"representation":[31],"DNA":[33,39,50,71],"sequences,":[34],"which":[35],"can":[36],"transform":[37],"sequence":[40],"into":[41],"plot":[43],"set":[44],"to":[45,66],"facilitate":[46],"quantitative":[47],"comparisons":[48],"sequences.":[51,72],"Thereafter,":[52],"associating":[53],"with":[54],"newly":[56,95],"designed":[57],"measure":[58],"similarity,":[60],"introduce":[62],"approach":[65],"make":[67],"similarities/dissimilarities":[68,77],"analysis":[69,78],"Finally,":[73],"the":[74,80,91],"applications":[75],"in":[76],"complete":[81],"coding":[82],"sequences":[83],"\u03b2-globin":[85],"genes":[86],"11":[88],"species":[89],"illustrate":[90],"utilities":[92],"our":[94],"proposed":[96],"method.":[97]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}