{"id":"https://openalex.org/W2130879396","doi":"https://doi.org/10.1186/1687-4153-2013-2","title":"Subtyping glioblastoma by combining miRNA and mRNA expression data using compressed sensing-based approach","display_name":"Subtyping glioblastoma by combining miRNA and mRNA expression data using compressed sensing-based approach","publication_year":2013,"publication_date":"2013-01-14","ids":{"openalex":"https://openalex.org/W2130879396","doi":"https://doi.org/10.1186/1687-4153-2013-2","mag":"2130879396","pmid":"https://pubmed.ncbi.nlm.nih.gov/23311594"},"language":"en","primary_location":{"id":"doi:10.1186/1687-4153-2013-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2013-2","pdf_url":"https://bsb-eurasipjournals.springeropen.com/counter/pdf/10.1186/1687-4153-2013-2","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://bsb-eurasipjournals.springeropen.com/counter/pdf/10.1186/1687-4153-2013-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101705306","display_name":"Wenlong Tang","orcid":"https://orcid.org/0009-0007-5552-4994"},"institutions":[{"id":"https://openalex.org/I114832834","display_name":"Tulane University","ror":"https://ror.org/04vmvtb21","country_code":"US","type":"education","lineage":["https://openalex.org/I114832834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenlong Tang","raw_affiliation_strings":["Department of Biomedical Engineering, Tulane University, New Orleans, LA, USA. wyp@tulane.edu","Department of Biomedical Engineering, Tulane University, New Orleans, LA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Tulane University, New Orleans, LA, USA. wyp@tulane.edu","institution_ids":["https://openalex.org/I114832834"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Tulane University, New Orleans, LA, USA","institution_ids":["https://openalex.org/I114832834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023726254","display_name":"Junbo Duan","orcid":"https://orcid.org/0000-0001-7170-3772"},"institutions":[{"id":"https://openalex.org/I114832834","display_name":"Tulane University","ror":"https://ror.org/04vmvtb21","country_code":"US","type":"education","lineage":["https://openalex.org/I114832834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junbo Duan","raw_affiliation_strings":["Department of Biomedical Engineering, Tulane University, New Orleans, LA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Tulane University, New Orleans, LA, USA","institution_ids":["https://openalex.org/I114832834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060423640","display_name":"Jigang Zhang","orcid":"https://orcid.org/0000-0003-4532-8379"},"institutions":[{"id":"https://openalex.org/I114832834","display_name":"Tulane University","ror":"https://ror.org/04vmvtb21","country_code":"US","type":"education","lineage":["https://openalex.org/I114832834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ji-Gang Zhang","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Tulane University, New Orleans, LA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Tulane University, New Orleans, LA, USA","institution_ids":["https://openalex.org/I114832834"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100339106","display_name":"Yu\u2010Ping Wang","orcid":"https://orcid.org/0000-0001-9340-5864"},"institutions":[{"id":"https://openalex.org/I113940042","display_name":"Shanghai University","ror":"https://ror.org/006teas31","country_code":"CN","type":"education","lineage":["https://openalex.org/I113940042"]},{"id":"https://openalex.org/I114832834","display_name":"Tulane University","ror":"https://ror.org/04vmvtb21","country_code":"US","type":"education","lineage":["https://openalex.org/I114832834"]},{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yu-Ping Wang","raw_affiliation_strings":["Center for Systems Biomedicine, Shanghai University for Science and Technology, Shanghai, China","Department of Biomedical Engineering, Tulane University, New Orleans, LA, USA","Department of Biostatistics and Bioinformatics, Tulane University, New Orleans, LA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Systems Biomedicine, Shanghai University for Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I148128674","https://openalex.org/I113940042"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Tulane University, New Orleans, LA, USA","institution_ids":["https://openalex.org/I114832834"]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Tulane University, New Orleans, LA, USA","institution_ids":["https://openalex.org/I114832834"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.2703,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.80248013,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2013","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.7278178930282593},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5292956829071045},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.5264440774917603},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5192391872406006},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.4543544054031372},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4309568405151367},{"id":"https://openalex.org/keywords/glioblastoma","display_name":"Glioblastoma","score":0.418386846780777},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3657210171222687},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2858934998512268},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2728177309036255},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.11955103278160095},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1055314838886261}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.7278178930282593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5292956829071045},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.5264440774917603},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5192391872406006},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.4543544054031372},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4309568405151367},{"id":"https://openalex.org/C2776194525","wikidata":"https://www.wikidata.org/wiki/Q282142","display_name":"Glioblastoma","level":2,"score":0.418386846780777},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3657210171222687},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2858934998512268},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2728177309036255},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.11955103278160095},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1055314838886261},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1687-4153-2013-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2013-2","pdf_url":"https://bsb-eurasipjournals.springeropen.com/counter/pdf/10.1186/1687-4153-2013-2","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},{"id":"pmid:23311594","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23311594","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP journal on bioinformatics & systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2651835","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3651309","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1687-4153-2013-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2013-2","pdf_url":"https://bsb-eurasipjournals.springeropen.com/counter/pdf/10.1186/1687-4153-2013-2","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6000000238418579}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320336023","display_name":"Program for Professor of Special Appointment (Eastern Scholar) at Shanghai Institutions of Higher Learning","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130879396.pdf","grobid_xml":"https://content.openalex.org/works/W2130879396.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W335759638","https://openalex.org/W1543517911","https://openalex.org/W1551136530","https://openalex.org/W1623613584","https://openalex.org/W1861916783","https://openalex.org/W1977252496","https://openalex.org/W1981256215","https://openalex.org/W1993952668","https://openalex.org/W1994673807","https://openalex.org/W2008279667","https://openalex.org/W2013828302","https://openalex.org/W2033473290","https://openalex.org/W2039065480","https://openalex.org/W2039872271","https://openalex.org/W2055475004","https://openalex.org/W2056147363","https://openalex.org/W2063978378","https://openalex.org/W2068930694","https://openalex.org/W2074655442","https://openalex.org/W2105528101","https://openalex.org/W2111732446","https://openalex.org/W2113942802","https://openalex.org/W2113962581","https://openalex.org/W2114496027","https://openalex.org/W2119043225","https://openalex.org/W2119667497","https://openalex.org/W2135810600","https://openalex.org/W2135836598","https://openalex.org/W2157582398","https://openalex.org/W2158418996","https://openalex.org/W2161289668","https://openalex.org/W2161444669","https://openalex.org/W2165764599","https://openalex.org/W2283261113","https://openalex.org/W4231243017"],"related_works":["https://openalex.org/W2396009657","https://openalex.org/W2799110842","https://openalex.org/W3032826521","https://openalex.org/W2391332606","https://openalex.org/W1462775415","https://openalex.org/W1987896487","https://openalex.org/W4229853287","https://openalex.org/W4391259201","https://openalex.org/W2057742104","https://openalex.org/W4283692078"],"abstract_inverted_index":{"In":[0,97,209],"the":[1,47,71,79,83,159,162,188,200,215,224,231,237],"clinical":[2],"practice,":[3],"many":[4],"diseases":[5],"such":[6],"as":[7],"glioblastoma,":[8],"leukemia,":[9],"diabetes,":[10],"and":[11,116,145,179,197,205,243],"prostates":[12],"have":[13,218],"multiple":[14,61,92,109],"subtypes.":[15,29],"Classifying":[16],"subtypes":[17,48,103,242],"accurately":[18],"using":[19,40,152],"genomic":[20,64,75,95],"data":[21,58,65,113,142,168],"will":[22],"provide":[23],"individualized":[24],"treatments":[25],"to":[26,35,70,148],"target-specific":[27],"disease":[28,51,248],"However,":[30],"it":[31],"is":[32,185],"often":[33,67],"difficult":[34],"obtain":[36],"satisfactory":[37],"classification":[38,84,160,183],"accuracy":[39,184,238],"only":[41],"one":[42,57],"type":[43],"of":[44,49,63,74,94,104,111,202,239],"data,":[45,173,178,191,196],"because":[46],"a":[50,128],"can":[52,86,234],"exhibit":[53],"similar":[54],"patterns":[55],"in":[56],"type.":[59],"Fortunately,":[60],"types":[62,93,110],"are":[66],"available":[68],"due":[69],"rapid":[72],"development":[73],"techniques.":[76],"This":[77],"raises":[78],"question":[80],"on":[81,161],"whether":[82],"performance":[85],"significantly":[87,235],"be":[88],"improved":[89],"by":[90,214],"combining":[91],"data.":[96,156,208],"this":[98,135],"article,":[99],"we":[100],"classified":[101],"four":[102],"glioblastoma":[105],"multiforme":[106],"(GBM)":[107],"with":[108,141,166,187,193,199,221],"genome-wide":[112],"(e.g.,":[114],"mRNA":[115,174,194,204],"miRNA":[117,171,189,206],"expression)":[118,177],"from":[119,143,223],"The":[120,137,182],"Cancer":[121],"Genome":[122],"Atlas":[123],"(TCGA)":[124],"project.":[125],"We":[126,157],"proposed":[127],"multi-class":[129],"compressed":[130],"sensing-based":[131],"detector":[132],"(MCSD)":[133],"for":[134,247],"study.":[136],"MCSD":[138],"was":[139],"trained":[140],"TCGA":[144],"then":[146],"applied":[147],"subtype":[149],"GBM":[150,241],"patients":[151],"an":[153],"independent":[154],"testing":[155],"performed":[158],"same":[163],"patient":[164],"subjects":[165],"three":[167],"types,":[169],"i.e.,":[170],"expression":[172,190,195,207],"(or":[175],"gene":[176],"their":[180],"combinations.":[181],"69.1%":[186],"52.7%":[192],"90.9%":[198],"combination":[201],"both":[203],"addition,":[210],"some":[211],"biomarkers":[212,246],"identified":[213],"integrated":[216],"approaches":[217],"been":[219],"confirmed":[220],"results":[222,228],"published":[225],"literatures.":[226],"These":[227],"indicate":[229],"that":[230],"combined":[232],"analysis":[233],"improve":[236],"classifying":[240],"identify":[244],"potential":[245],"diagnosis.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
