{"id":"https://openalex.org/W2171236873","doi":"https://doi.org/10.1186/1687-4153-2013-12","title":"Feature ranking based on synergy networks to identify prognostic markers in DPT-1","display_name":"Feature ranking based on synergy networks to identify prognostic markers in DPT-1","publication_year":2013,"publication_date":"2013-09-19","ids":{"openalex":"https://openalex.org/W2171236873","doi":"https://doi.org/10.1186/1687-4153-2013-12","mag":"2171236873","pmid":"https://pubmed.ncbi.nlm.nih.gov/24050757"},"language":"en","primary_location":{"id":"doi:10.1186/1687-4153-2013-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2013-12","pdf_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2013-12","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2013-12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026779681","display_name":"Amin Ahmadi Adl","orcid":"https://orcid.org/0000-0003-3174-3176"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amin Ahmadi Adl","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Florida, Tampa, FL, 33620, USA. xqian@ece.tamu.edu","Department of Computer Science and Engineering, University of South Florida, Tampa, FL, 33620, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, Tampa, FL, 33620, USA. xqian@ece.tamu.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, Tampa, FL, 33620, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073946580","display_name":"Xiaoning Qian","orcid":"https://orcid.org/0000-0002-4347-2476"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoning Qian","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Florida, Tampa, FL, 33620, USA","Department of Electrical & Computer Engineering, Texas A&M University, College Station, TX, 77843, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, Tampa, FL, 33620, USA","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department of Electrical & Computer Engineering, Texas A&M University, College Station, TX, 77843, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102009535","display_name":"Ping Xu","orcid":"https://orcid.org/0000-0003-1599-7408"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ping Xu","raw_affiliation_strings":["Department of Pediatrics, College of Medicine, University of South Florida, Tampa, FL, 33613, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, College of Medicine, University of South Florida, Tampa, FL, 33613, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050470241","display_name":"Kendra Vehik","orcid":"https://orcid.org/0000-0001-6243-6772"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kendra Vehik","raw_affiliation_strings":["Department of Pediatrics, College of Medicine, University of South Florida, Tampa, FL, 33613, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, College of Medicine, University of South Florida, Tampa, FL, 33613, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084625995","display_name":"Jeffrey P. Krischer","orcid":"https://orcid.org/0000-0003-4526-888X"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey P Krischer","raw_affiliation_strings":["Department of Pediatrics, College of Medicine, University of South Florida, Tampa, FL, 33613, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, College of Medicine, University of South Florida, Tampa, FL, 33613, USA","institution_ids":["https://openalex.org/I2613432"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5026779681"],"corresponding_institution_ids":["https://openalex.org/I2613432"],"apc_list":null,"apc_paid":null,"fwci":1.3928,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.83570213,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2013","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11171","display_name":"Diabetes and associated disorders","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11171","display_name":"Diabetes and associated disorders","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10560","display_name":"Diabetes Management and Research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2712","display_name":"Endocrinology, Diabetes and Metabolism"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11337","display_name":"Tryptophan and brain disorders","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/2803","display_name":"Biological Psychiatry"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6407831907272339},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6298953294754028},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6196796298027039},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4761505126953125},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2777445912361145}],"concepts":[{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6407831907272339},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6298953294754028},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6196796298027039},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4761505126953125},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2777445912361145},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1687-4153-2013-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2013-12","pdf_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2013-12","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},{"id":"pmid:24050757","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24050757","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP journal on bioinformatics & systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2839651","is_oa":true,"landing_page_url":"http://europepmc.org/abstract/MED/24050757","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3849336","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3849336","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"EURASIP J Bioinform Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1687-4153-2013-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1687-4153-2013-12","pdf_url":"https://bsb-eurasipjournals.springeropen.com/track/pdf/10.1186/1687-4153-2013-12","source":{"id":"https://openalex.org/S22696228","display_name":"EURASIP Journal on Bioinformatics and Systems Biology","issn_l":"1687-4145","issn":["1687-4145","1687-4153"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Bioinformatics and Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7699999809265137,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G197008112","display_name":null,"funder_award_id":"NIDDK","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3308757808","display_name":null,"funder_award_id":"R21DK092845","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7418893700","display_name":null,"funder_award_id":"R21DK092845","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171236873.pdf","grobid_xml":"https://content.openalex.org/works/W2171236873.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W614574849","https://openalex.org/W1192663989","https://openalex.org/W1514907448","https://openalex.org/W1565326138","https://openalex.org/W1966315117","https://openalex.org/W1966360257","https://openalex.org/W1970897847","https://openalex.org/W1986262724","https://openalex.org/W2011354593","https://openalex.org/W2011433684","https://openalex.org/W2019972832","https://openalex.org/W2082603400","https://openalex.org/W2088169690","https://openalex.org/W2119387367","https://openalex.org/W2124712956","https://openalex.org/W2131878646","https://openalex.org/W2154053567","https://openalex.org/W2158620919","https://openalex.org/W2169576771","https://openalex.org/W2171800571","https://openalex.org/W2602753196","https://openalex.org/W2798766386","https://openalex.org/W2917261338","https://openalex.org/W4211250195","https://openalex.org/W4235178178","https://openalex.org/W4255060158"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{":":[0],"Interaction":[1],"among":[2,116],"different":[3],"risk":[4,34,56,70,117],"factors":[5,71,118],"plays":[6],"an":[7],"important":[8],"role":[9],"in":[10,119],"the":[11,42,104,112,129,152,167],"development":[12,168],"and":[13,138,147,163,180],"progress":[14],"of":[15,44,68,131,169],"complex":[16,45,79],"disease,":[17],"such":[18],"as":[19,75],"diabetes.":[20,172],"However,":[21],"traditional":[22,105,197],"epidemiological":[23],"methods":[24],"often":[25],"focus":[26],"on":[27,60,135,151,177,200],"analyzing":[28],"individual":[29,123,201],"or":[30],"a":[31,52,61,96],"few":[32],"'essential'":[33],"factors,":[35],"hopefully":[36],"to":[37,87,95,121,144],"obtain":[38],"some":[39],"insights":[40],"into":[41,110],"etiology":[43],"disease.":[46,80],"In":[47],"this":[48,89],"paper,":[49],"we":[50,140],"propose":[51],"systematic":[53],"framework":[54],"for":[55,78],"factor":[57],"analysis":[58,198],"based":[59,134,150,176,199],"synergy":[62],"network,":[63],"which":[64,93],"enables":[65],"better":[66],"identification":[67],"potential":[69],"that":[72,102,159,184],"may":[73,160],"serve":[74],"prognostic":[76,162,190],"markers":[77,191],"A":[81],"spectral":[82],"approximate":[83],"algorithm":[84],"is":[85],"derived":[86],"solve":[88],"network":[90],"optimization":[91],"problem,":[92],"leads":[94],"new":[97],"network-based":[98,186],"feature":[99,106],"ranking":[100,107,187],"method":[101,133,143,188],"improves":[103],"by":[108],"taking":[109],"account":[111],"pairwise":[113],"synergistic":[114],"interactions":[115],"addition":[120],"their":[122],"predictive":[124,194],"power.":[125],"We":[126],"first":[127],"evaluate":[128],"performance":[130,174],"our":[132,142,185],"simulated":[136,179],"datasets,":[137],"then,":[139],"use":[141],"study":[145,158],"immunologic":[146],"metabolic":[148],"indices":[149],"Diabetes":[153],"Prevention":[154],"Trial-Type":[155],"1":[156,171],"(DPT-1)":[157],"provide":[161],"diagnostic":[164],"information":[165],"regarding":[166],"type":[170],"The":[173],"comparison":[175],"both":[178],"DPT-1":[181],"datasets":[182],"demonstrates":[183],"provides":[189],"with":[192],"higher":[193],"power":[195],"than":[196],"factors.":[202]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
