{"id":"https://openalex.org/W1964769925","doi":"https://doi.org/10.1186/1472-6947-9-s1-s5","title":"BioDEAL: community generation of biological annotations","display_name":"BioDEAL: community generation of biological annotations","publication_year":2009,"publication_date":"2009-11-03","ids":{"openalex":"https://openalex.org/W1964769925","doi":"https://doi.org/10.1186/1472-6947-9-s1-s5","mag":"1964769925","pmid":"https://pubmed.ncbi.nlm.nih.gov/19891799"},"language":"en","primary_location":{"id":"doi:10.1186/1472-6947-9-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-9-s1-s5","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-9-S1-S5","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-9-S1-S5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002863516","display_name":"Paul Breimyer","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Breimyer","raw_affiliation_strings":["North Carolina State University, Raleigh, NC 27695, USA. pwbreimy@ncsu.edu","Oak Ridge National Laboratory, Oak Ridge, USA","North Carolina State University, Raleigh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, NC 27695, USA. pwbreimy@ncsu.edu","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"North Carolina State University, Raleigh, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101718053","display_name":"Nathan Green","orcid":"https://orcid.org/0000-0002-5312-1426"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan Green","raw_affiliation_strings":["North Carolina State University, Raleigh, C 27695, USA","Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","Oak Ridge National Laboratory, Oak Ridge, USA","North Carolina State University, Raleigh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, C 27695, USA","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"North Carolina State University, Raleigh, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062192048","display_name":"V. S. Sanjay Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vinay Kumar","raw_affiliation_strings":["North Carolina State University, Raleigh, C 27695, USA","Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","North Carolina State University, Raleigh, USA","Oak Ridge National Laboratory, Oak Ridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, C 27695, USA","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"North Carolina State University, Raleigh, USA","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040551107","display_name":"Nagiza F. Samatova","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nagiza F Samatova","raw_affiliation_strings":["North Carolina State University, Raleigh, C 27695, USA","Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","Oak Ridge National Laboratory, Oak Ridge, USA","North Carolina State University, Raleigh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, C 27695, USA","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"North Carolina State University, Raleigh, USA","institution_ids":["https://openalex.org/I137902535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5040551107"],"corresponding_institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I137902535"],"apc_list":{"value":1570,"currency":"GBP","value_usd":2690},"apc_paid":{"value":1570,"currency":"GBP","value_usd":2690},"fwci":0.3777,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.59354781,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"9","issue":"S1","first_page":"S5","last_page":"S5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0027000000700354576,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.8028640747070312},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.754497766494751},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6748325824737549},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.629884660243988},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5888879895210266},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4868004024028778},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.48002567887306213},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4445798397064209},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.43843719363212585},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.4176430106163025},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21300014853477478},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19760045409202576},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.15156340599060059},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11285564303398132},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0867062509059906}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.8028640747070312},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.754497766494751},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6748325824737549},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.629884660243988},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5888879895210266},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4868004024028778},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.48002567887306213},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4445798397064209},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.43843719363212585},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.4176430106163025},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21300014853477478},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19760045409202576},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.15156340599060059},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11285564303398132},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0867062509059906},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012944","descriptor_name":"Social Support","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012944","descriptor_name":"Social Support","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012944","descriptor_name":"Social Support","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1472-6947-9-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-9-s1-s5","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-9-S1-S5","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:19891799","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19891799","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:osti.gov:1626565","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626565","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2773920","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2773920","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1472-6947-9-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-9-s1-s5","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-9-S1-S5","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6399999856948853}],"awards":[{"id":"https://openalex.org/G3097753008","display_name":null,"funder_award_id":"DEAC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3827985234","display_name":null,"funder_award_id":"DEAC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G7280934866","display_name":null,"funder_award_id":"DEAC05-00OR22725","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320338287","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1964769925.pdf","grobid_xml":"https://content.openalex.org/works/W1964769925.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1480287196","https://openalex.org/W1525672751","https://openalex.org/W1553529581","https://openalex.org/W1827755136","https://openalex.org/W2039612385","https://openalex.org/W2053673723","https://openalex.org/W2058856481","https://openalex.org/W2071475771","https://openalex.org/W2094591616","https://openalex.org/W2103017472","https://openalex.org/W2113142309","https://openalex.org/W2113786274","https://openalex.org/W2132180308","https://openalex.org/W2132784310","https://openalex.org/W2135443614","https://openalex.org/W2149803936","https://openalex.org/W2159180716","https://openalex.org/W2163107094","https://openalex.org/W4247964656"],"related_works":["https://openalex.org/W4381571608","https://openalex.org/W2867972286","https://openalex.org/W2936116675","https://openalex.org/W2291027050","https://openalex.org/W2307569040","https://openalex.org/W1018570427","https://openalex.org/W2074162075","https://openalex.org/W4242570880","https://openalex.org/W1483126190","https://openalex.org/W2323949201"],"abstract_inverted_index":{"BACKGROUND:":[0],"Publication":[1],"databases":[2,18],"in":[3,11,97],"biomedicine":[4],"(e.g.,":[5],"PubMed,":[6],"MEDLINE)":[7],"are":[8,16,103],"growing":[9,87],"rapidly":[10],"size":[12],"every":[13],"year,":[14],"as":[15,39],"public":[17],"of":[19,60,65,94,161],"experimental":[20,74,158],"biological":[21,143],"data":[22,75],"and":[23,52,62,76,120,167,176],"annotations":[24],"derived":[25],"from":[26],"the":[27,58,63,86,134,151,171],"data.":[28,159],"Publications":[29],"often":[30],"contain":[31],"evidence":[32,55,72,125,156,169],"that":[33,128],"confirm":[34],"or":[35,112,163],"disprove":[36],"annotations,":[37],"such":[38],"putative":[40],"protein":[41],"functions,":[42],"however,":[43],"it":[44],"is":[45],"increasingly":[46],"difficult":[47],"for":[48],"biologists":[49,153,162],"to":[50,57,69,107,137,140,145],"identify":[51,108],"process":[53],"published":[54,71,155],"due":[56],"volume":[59],"papers":[61],"lack":[64],"a":[66,123,130],"systematic":[67],"approach":[68],"associate":[70],"with":[73,157],"annotations.":[77],"Natural":[78],"Language":[79],"Processing":[80],"(NLP)":[81],"tools":[82,102],"can":[83,173],"help":[84],"address":[85],"divide":[88],"by":[89],"providing":[90],"automatic":[91],"high-throughput":[92],"detection":[93],"simple":[95],"terms":[96],"publication":[98],"text.":[99],"However,":[100],"NLP":[101],"not":[104],"mature":[105],"enough":[106],"complex":[109],"terms,":[110],"relationships,":[111],"events.":[113],"RESULTS:":[114],"In":[115],"this":[116,178],"paper":[117],"we":[118],"present":[119],"extend":[121],"BioDEAL,":[122],"community":[124,172],"annotation":[126],"system":[127],"introduces":[129],"feedback":[131],"loop":[132],"into":[133],"database-publication":[135],"cycle":[136],"allow":[138],"scientists":[139],"connect":[141],"data-driven":[142],"concepts":[144],"publications.":[146],"CONCLUSION:":[147],"BioDEAL":[148],"may":[149],"change":[150],"way":[152],"relate":[154],"Instead":[160],"research":[164],"groups":[165],"searching":[166],"managing":[168],"independently,":[170],"collectively":[174],"build":[175],"share":[177],"knowledge.":[179]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
