{"id":"https://openalex.org/W1595714231","doi":"https://doi.org/10.1186/1472-6947-7-3","title":"A UMLS-based spell checker for natural language processing in vaccine safety","display_name":"A UMLS-based spell checker for natural language processing in vaccine safety","publication_year":2007,"publication_date":"2007-02-12","ids":{"openalex":"https://openalex.org/W1595714231","doi":"https://doi.org/10.1186/1472-6947-7-3","mag":"1595714231","pmid":"https://pubmed.ncbi.nlm.nih.gov/17295907"},"language":"en","primary_location":{"id":"doi:10.1186/1472-6947-7-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-7-3","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-7-3","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-7-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109344691","display_name":"Herman Tolentino","orcid":"https://orcid.org/0000-0002-8577-3744"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]},{"id":"https://openalex.org/I19085752","display_name":"National Center for Immunization and Respiratory Diseases","ror":"https://ror.org/05je2tx78","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1289490764","https://openalex.org/I1299022934","https://openalex.org/I1299022934","https://openalex.org/I19085752","https://openalex.org/I4210109567"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Herman D Tolentino","raw_affiliation_strings":["Bacterial Vaccine-Preventable Diseases Branch, Epidemiology and Surveillance Division, National Immunization Program, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA. htolentino@cdc.gov","Bacterial Vaccine-Preventable Diseases Branch, Epidemiology and Surveillance Division, National Immunization Program, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bacterial Vaccine-Preventable Diseases Branch, Epidemiology and Surveillance Division, National Immunization Program, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA. htolentino@cdc.gov","institution_ids":["https://openalex.org/I19085752","https://openalex.org/I1289490764"]},{"raw_affiliation_string":"Bacterial Vaccine-Preventable Diseases Branch, Epidemiology and Surveillance Division, National Immunization Program, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA","institution_ids":["https://openalex.org/I19085752","https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087021878","display_name":"Michael D. Matters","orcid":null},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]},{"id":"https://openalex.org/I4210113004","display_name":"National Center for Chronic Disease Prevention and Health Promotion","ror":"https://ror.org/021rths28","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934","https://openalex.org/I4210113004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael D Matters","raw_affiliation_strings":["Division for Heart Disease and Stroke Prevention, National Center for Chronic Disease Prevention and Health Promotion, Centers for Disease Control and Prevention, Atlanta, GA, 30341, USA","Public Health Informatics Fellowship Program, Office of Workforce and Career Development, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division for Heart Disease and Stroke Prevention, National Center for Chronic Disease Prevention and Health Promotion, Centers for Disease Control and Prevention, Atlanta, GA, 30341, USA","institution_ids":["https://openalex.org/I4210113004"]},{"raw_affiliation_string":"Public Health Informatics Fellowship Program, Office of Workforce and Career Development, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002285870","display_name":"Wikke Walop","orcid":null},"institutions":[{"id":"https://openalex.org/I177235860","display_name":"Public Health Agency of Canada","ror":"https://ror.org/023xf2a37","country_code":"CA","type":"government","lineage":["https://openalex.org/I1288894424","https://openalex.org/I177235860"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Wikke Walop","raw_affiliation_strings":["Immunization & Respiratory Infections Division, Centre for Infectious Disease Prevention & Control, Public Health Agency of Canada, Ottawa, Ontario, K1A 0K9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Immunization & Respiratory Infections Division, Centre for Infectious Disease Prevention & Control, Public Health Agency of Canada, Ottawa, Ontario, K1A 0K9, Canada","institution_ids":["https://openalex.org/I177235860"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110944703","display_name":"Barbara Law","orcid":null},"institutions":[{"id":"https://openalex.org/I177235860","display_name":"Public Health Agency of Canada","ror":"https://ror.org/023xf2a37","country_code":"CA","type":"government","lineage":["https://openalex.org/I1288894424","https://openalex.org/I177235860"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Barbara Law","raw_affiliation_strings":["Immunization & Respiratory Infections Division, Centre for Infectious Disease Prevention & Control, Public Health Agency of Canada, Ottawa, Ontario, K1A 0K9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Immunization & Respiratory Infections Division, Centre for Infectious Disease Prevention & Control, Public Health Agency of Canada, Ottawa, Ontario, K1A 0K9, Canada","institution_ids":["https://openalex.org/I177235860"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020693214","display_name":"Wesley Tong","orcid":"https://orcid.org/0000-0003-2983-6103"},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Wesley Tong","raw_affiliation_strings":["Honours Biology and Pharmacology Programme, McMaster University, Hamilton, Ontario, L8S 4L8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Honours Biology and Pharmacology Programme, McMaster University, Hamilton, Ontario, L8S 4L8, Canada","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453123","display_name":"Fang Liu","orcid":"https://orcid.org/0000-0003-3028-5927"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fang Liu","raw_affiliation_strings":["Office of High Performance Computing and Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Office of High Performance Computing and Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001876839","display_name":"Paul Fontelo","orcid":"https://orcid.org/0000-0003-3186-3215"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Fontelo","raw_affiliation_strings":["Office of High Performance Computing and Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Office of High Performance Computing and Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068284254","display_name":"Katrin Kohl","orcid":"https://orcid.org/0000-0001-5250-2385"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]},{"id":"https://openalex.org/I4210137449","display_name":"Office of the Director","ror":"https://ror.org/04nseet23","country_code":"US","type":"funder","lineage":["https://openalex.org/I1311060795","https://openalex.org/I4210137449"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katrin Kohl","raw_affiliation_strings":["Immunization Safety Office, Office of the Chief Science Officer, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Immunization Safety Office, Office of the Chief Science Officer, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA","institution_ids":["https://openalex.org/I4210137449","https://openalex.org/I1289490764"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006839213","display_name":"Daniel C. Payne","orcid":"https://orcid.org/0000-0002-5871-911X"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]},{"id":"https://openalex.org/I19085752","display_name":"National Center for Immunization and Respiratory Diseases","ror":"https://ror.org/05je2tx78","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1289490764","https://openalex.org/I1299022934","https://openalex.org/I1299022934","https://openalex.org/I19085752","https://openalex.org/I4210109567"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel C Payne","raw_affiliation_strings":["Bacterial Vaccine-Preventable Diseases Branch, Epidemiology and Surveillance Division, National Immunization Program, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bacterial Vaccine-Preventable Diseases Branch, Epidemiology and Surveillance Division, National Immunization Program, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA","institution_ids":["https://openalex.org/I19085752","https://openalex.org/I1289490764"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5109344691"],"corresponding_institution_ids":["https://openalex.org/I1289490764","https://openalex.org/I19085752"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":1.0767,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.74635794,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.49309998750686646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.49309998750686646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.1378999948501587,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.05139999836683273,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spelling","display_name":"Spelling","score":0.8108359575271606},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8023719787597656},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.7557963132858276},{"id":"https://openalex.org/keywords/spell","display_name":"Spell","score":0.6496567726135254},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.559959888458252},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5162737369537354},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.08580660820007324}],"concepts":[{"id":"https://openalex.org/C2777801307","wikidata":"https://www.wikidata.org/wiki/Q2088390","display_name":"Spelling","level":2,"score":0.8108359575271606},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8023719787597656},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.7557963132858276},{"id":"https://openalex.org/C2780957641","wikidata":"https://www.wikidata.org/wiki/Q1999796","display_name":"Spell","level":2,"score":0.6496567726135254},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.559959888458252},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5162737369537354},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.08580660820007324},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004014","descriptor_name":"Dictionaries as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004014","descriptor_name":"Dictionaries as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004014","descriptor_name":"Dictionaries as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004014","descriptor_name":"Dictionaries as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011358","descriptor_name":"Product Surveillance, Postmarketing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011358","descriptor_name":"Product Surveillance, Postmarketing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011358","descriptor_name":"Product Surveillance, Postmarketing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011358","descriptor_name":"Product Surveillance, Postmarketing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012449","descriptor_name":"Safety","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012449","descriptor_name":"Safety","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012449","descriptor_name":"Safety","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012449","descriptor_name":"Safety","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000009","qualifier_name":"adverse effects","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000009","qualifier_name":"adverse effects","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000009","qualifier_name":"adverse effects","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000009","qualifier_name":"adverse effects","is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1472-6947-7-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-7-3","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-7-3","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:17295907","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17295907","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:osti.gov:1626564","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626564","pdf_url":"https://www.osti.gov/servlets/purl/1626564","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:5ff422e07e924497ad244f452d1320d6","is_oa":false,"landing_page_url":"https://doaj.org/article/5ff422e07e924497ad244f452d1320d6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 7, Iss 1, p 3 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1805499","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1805499","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1472-6947-7-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-7-3","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-7-3","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6499999761581421}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"},{"id":"https://openalex.org/F4320332382","display_name":"Oak Ridge Institute for Science and Education","ror":"https://ror.org/0526p1y61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1595714231.pdf","grobid_xml":"https://content.openalex.org/works/W1595714231.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W34638141","https://openalex.org/W70674440","https://openalex.org/W178134144","https://openalex.org/W333927187","https://openalex.org/W1504212872","https://openalex.org/W1536985005","https://openalex.org/W1545047802","https://openalex.org/W1669499790","https://openalex.org/W1843386722","https://openalex.org/W2002108805","https://openalex.org/W2010595692","https://openalex.org/W2012688710","https://openalex.org/W2034511967","https://openalex.org/W2066792529","https://openalex.org/W2072901132","https://openalex.org/W2100716182","https://openalex.org/W2111865815","https://openalex.org/W2127241285","https://openalex.org/W2150934173","https://openalex.org/W2165360381","https://openalex.org/W2172087872","https://openalex.org/W2408929585","https://openalex.org/W2546095991","https://openalex.org/W4253339466"],"related_works":["https://openalex.org/W4255929276","https://openalex.org/W2789394886","https://openalex.org/W4392643387","https://openalex.org/W2184839352","https://openalex.org/W2083657536","https://openalex.org/W2042822003","https://openalex.org/W2103233694","https://openalex.org/W2034944613","https://openalex.org/W2044923869","https://openalex.org/W2097478624"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,289,304],"Institute":[2],"of":[3,145,178,259,278,339],"Medicine":[4],"has":[5],"identified":[6],"patient":[7,33],"safety":[8],"as":[9,106,255,266,274],"a":[10,100,107,237,267,275],"key":[11],"goal":[12],"for":[13,117,141,215,330],"health":[14,28],"care":[15],"in":[16,94,110,155,286],"the":[17,81,111,176,179,196,216,251,256,263,272,287,299,316,325],"United":[18],"States.":[19],"Detecting":[20],"vaccine":[21],"adverse":[22,37],"events":[23,38],"is":[24],"an":[25],"important":[26],"public":[27],"activity":[29],"that":[30,48,241],"contributes":[31],"to":[32,79,98,136,186,194,245,281,294,315,336],"safety.":[34],"Reports":[35],"about":[36],"following":[39],"immunization":[40],"(AEFI)":[41],"from":[42,64],"surveillance":[43,134],"systems":[44],"contain":[45],"free-text":[46,138],"components":[47],"can":[49,242],"be":[50,243,309],"analyzed":[51],"using":[52,126,333],"natural":[53,112],"language":[54,113],"processing.":[55],"To":[56],"extract":[57],"Unified":[58],"Medical":[59],"Language":[60],"System":[61],"(UMLS)":[62],"concepts":[63,73],"free":[65],"text":[66,82,332],"and":[67,86,88,149,169,199,210,228,262],"classify":[68],"AEFI":[69,118,133,247],"reports":[70,135],"based":[71],"on":[72,203],"they":[74],"contain,":[75],"we":[76,151,327],"first":[77,108],"needed":[78],"clean":[80],"by":[83,183,311],"expanding":[84],"abbreviations":[85],"shortcuts":[87],"correcting":[89],"spelling":[90,102,153],"errors.":[91],"Our":[92],"objective":[93],"this":[95],"paper":[96],"was":[97,292,301],"create":[99,137],"UMLS-based":[101],"error":[103,159,171],"correction":[104,154],"tool":[105],"step":[109],"processing":[114,306],"(NLP)":[115],"pipeline":[116],"reports.":[119,248],"METHODS:":[120],"We":[121,130,173,190,235,249,270],"developed":[122,328],"spell":[123,181,197,217,239],"checking":[124],"algorithms":[125],"open":[127],"source":[128,258,277],"tools.":[129],"used":[131,191,244,250,271],"de-identified":[132],"data":[139],"sets":[140],"analysis.":[142],"After":[143],"expansion":[144],"abbreviated":[146],"clinical":[147],"terms":[148,261,280],"shortcuts,":[150],"performed":[152],"four":[156],"steps:":[157],"(1)":[158],"detection,":[160],"(2)":[161],"word":[162,166],"list":[163,167],"generation,":[164],"(3)":[165],"disambiguation":[168],"(4)":[170],"correction.":[172,188],"then":[174],"measured":[175],"performance":[177,202],"resulting":[180],"checker":[182,198,218,240],"comparing":[184],"it":[185,313],"manual":[187],"RESULTS:":[189],"12,056":[192],"words":[193,285],"train":[195],"tested":[200],"its":[201],"8,131":[204],"words.":[205],"During":[206],"testing,":[207],"sensitivity,":[208],"specificity,":[209],"positive":[211],"predictive":[212],"value":[213],"(PPV)":[214],"were":[219],"74%":[220],"(95%":[221,225,230],"CI:":[222,226,231],"74-75),":[223],"100%":[224],"100-100),":[227],"47%":[229],"46%-48%),":[232],"respectively.":[233],"CONCLUSION:":[234],"created":[236],"prototype":[238,290],"process":[246],"UMLS":[252,273],"Specialist":[253],"Lexicon":[254],"primary":[257],"dictionary":[260,279],"WordNet":[264],"lexicon":[265],"secondary":[268],"source.":[269],"domain-specific":[276],"compare":[282],"potentially":[283],"misspelled":[284],"corpus.":[288],"sensitivity":[291],"comparable":[293],"currently":[295],"available":[296],"tools,":[297],"but":[298],"specificity":[300],"much":[302],"superior.":[303],"slow":[305],"speed":[307],"may":[308,323],"improved":[310],"trimming":[312],"down":[314],"most":[317],"useful":[318,329],"component":[319],"algorithms.":[320],"Other":[321],"investigators":[322],"find":[324],"methods":[326],"cleaning":[331],"lexicons":[334],"specific":[335],"their":[337],"area":[338],"interest.":[340]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
