{"id":"https://openalex.org/W1492286502","doi":"https://doi.org/10.1186/1472-6947-13-s1-s7","title":"On the efficacy of per-relation basis performance evaluation for PPI extraction and a high-precision rule-based approach","display_name":"On the efficacy of per-relation basis performance evaluation for PPI extraction and a high-precision rule-based approach","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W1492286502","doi":"https://doi.org/10.1186/1472-6947-13-s1-s7","mag":"1492286502","pmid":"https://pubmed.ncbi.nlm.nih.gov/23566263"},"language":"en","primary_location":{"id":"doi:10.1186/1472-6947-13-s1-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-13-s1-s7","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/1472-6947-13-S1-S7","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/1472-6947-13-S1-S7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078925783","display_name":"Junkyu Lee","orcid":"https://orcid.org/0000-0003-1985-5116"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Junkyu Lee","raw_affiliation_strings":["Department of Computer Science, Korea University, Seoul, Korea","Department of Computer Science Korea University Seoul Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Korea University, Seoul, Korea","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Department of Computer Science Korea University Seoul Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072695717","display_name":"Seongsoon Kim","orcid":"https://orcid.org/0000-0002-9872-0430"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seongsoon Kim","raw_affiliation_strings":["Department of Computer Science, Korea University, Seoul, Korea","Department of Computer Science Korea University Seoul Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Korea University, Seoul, Korea","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Department of Computer Science Korea University Seoul Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005418049","display_name":"Sunwon Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sunwon Lee","raw_affiliation_strings":["Department of Computer Science, Korea University, Seoul, Korea","Department of Computer Science Korea University Seoul Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Korea University, Seoul, Korea","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Department of Computer Science Korea University Seoul Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004629166","display_name":"Kyubum Lee","orcid":"https://orcid.org/0000-0003-2015-3939"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kyubum Lee","raw_affiliation_strings":["Department of Computer Science, Korea University, Seoul, Korea","Department of Computer Science Korea University Seoul Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Korea University, Seoul, Korea","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Department of Computer Science Korea University Seoul Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076917278","display_name":"Jaewoo Kang","orcid":"https://orcid.org/0000-0001-6798-9106"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaewoo Kang","raw_affiliation_strings":["Department of Computer Science, Korea University, Seoul, Korea","Department of Computer Science Korea University Seoul Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Korea University, Seoul, Korea","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Department of Computer Science Korea University Seoul Korea","institution_ids":["https://openalex.org/I197347611"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5078925783"],"corresponding_institution_ids":["https://openalex.org/I197347611"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":0.1496,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.55039629,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"13","issue":"S1","first_page":"S7","last_page":"S7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9782999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9782999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.008999999612569809,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.8127733469009399},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7778975367546082},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.7301718592643738},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.699748158454895},{"id":"https://openalex.org/keywords/basis","display_name":"Basis (linear algebra)","score":0.5917891263961792},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.5807305574417114},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.5528478622436523},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.54732346534729},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5332635641098022},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.4390285015106201},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.4115138351917267},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40014076232910156},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3941463232040405},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3680349886417389},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11714431643486023}],"concepts":[{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.8127733469009399},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7778975367546082},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.7301718592643738},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.699748158454895},{"id":"https://openalex.org/C12426560","wikidata":"https://www.wikidata.org/wiki/Q189569","display_name":"Basis (linear algebra)","level":2,"score":0.5917891263961792},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.5807305574417114},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.5528478622436523},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.54732346534729},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5332635641098022},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.4390285015106201},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.4115138351917267},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40014076232910156},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3941463232040405},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3680349886417389},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11714431643486023},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1472-6947-13-s1-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-13-s1-s7","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/1472-6947-13-S1-S7","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:23566263","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23566263","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:europepmc.org:2619839","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3618211","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3618211","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3618211","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1472-6947-13-s1-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-13-s1-s7","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/1472-6947-13-S1-S7","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3655829638","display_name":null,"funder_award_id":"2012R1A2A2A01014729","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G8908573149","display_name":null,"funder_award_id":"2012M3C4A7033341","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320322349","display_name":"Ministry of Education, Science and Technology","ror":"https://ror.org/01p262204"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1492286502.pdf","grobid_xml":"https://content.openalex.org/works/W1492286502.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W59585178","https://openalex.org/W151685798","https://openalex.org/W1522668200","https://openalex.org/W1850865022","https://openalex.org/W1980127292","https://openalex.org/W1981276685","https://openalex.org/W1986704581","https://openalex.org/W1990794790","https://openalex.org/W1996787131","https://openalex.org/W2004917988","https://openalex.org/W2016928406","https://openalex.org/W2027869740","https://openalex.org/W2048059249","https://openalex.org/W2077997913","https://openalex.org/W2097960255","https://openalex.org/W2104012281","https://openalex.org/W2109070394","https://openalex.org/W2109436069","https://openalex.org/W2112454182","https://openalex.org/W2121844933","https://openalex.org/W2123112337","https://openalex.org/W2127713198","https://openalex.org/W2132288458","https://openalex.org/W2138627627","https://openalex.org/W2148146609","https://openalex.org/W2152698860","https://openalex.org/W2157628440","https://openalex.org/W2163362093","https://openalex.org/W2166111585","https://openalex.org/W2167072947","https://openalex.org/W2169974160","https://openalex.org/W2912218307","https://openalex.org/W2968573267","https://openalex.org/W2990138404","https://openalex.org/W2999905431","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2382566571","https://openalex.org/W4387688064","https://openalex.org/W2349321798","https://openalex.org/W2366686860","https://openalex.org/W2350859087","https://openalex.org/W2387118502","https://openalex.org/W2358294942","https://openalex.org/W4367460280","https://openalex.org/W4328049145","https://openalex.org/W2251315883"],"abstract_inverted_index":{"BACKGROUND:":[0],"Most":[1],"previous":[2,184],"Protein":[3,4],"Interaction":[5],"(PPI)":[6],"studies":[7,137],"evaluated":[8,27],"their":[9],"algorithms'":[10],"performance":[11,86,146,182,203,229],"based":[12],"on":[13,139,147],"\"per-instance\"":[14],"precision":[15,149],"and":[16,150,262],"recall,":[17,151],"in":[18,50,55,152,220,241],"which":[19,235],"the":[20,44,72,91,97,115,145,194,202,205,228,248,255,264,271],"instances":[21,107],"of":[22,65,90,104,204,214,231,257,266],"an":[23],"interaction":[24],"relation":[25,46,116],"were":[26],"independently.":[28],"However,":[29],"we":[30,79,121,236,252],"argue":[31],"that":[32,174,221],"this":[33,77,119,215,222],"standard":[34],"evaluation":[35,87,230,245,250],"method":[36,88],"should":[37],"be":[38,48,110,218],"revisited.":[39],"In":[40,76,96,118],"a":[41,62,81,102,105,124,164,168,190,258],"large":[42,157],"corpus,":[43],"same":[45],"can":[47,160,217],"described":[49],"various":[51],"different":[52],"forms":[53],"and,":[54],"practice,":[56],"correctly":[57,111],"identifying":[58],"not":[59,177],"all":[60,133],"but":[61,186],"small":[63],"subset":[64,103],"them":[66],"would":[67],"often":[68],"suffice":[69],"to":[70,109,113,143,193,227],"detect":[71],"given":[73],"interaction.":[74],"METHODS:":[75],"regard,":[78],"propose":[80],"more":[82,162,239],"pragmatic":[83],"\"per-relation\"":[84],"basis":[85,94,99],"instead":[89],"conventional":[92],"per-instance":[93],"method.":[95],"per-relation":[98,181],"method,":[100],"only":[101,178],"relation's":[106],"needs":[108],"identified":[112],"make":[114],"positive.":[117],"work,":[120],"also":[122,187,253],"introduce":[123],"new":[125,225,249],"high-precision":[126,165,259,272],"rule-based":[127,268],"PPI":[128,135,196,232],"extraction":[129,136,197,233,260],"algorithm.":[130],"While":[131],"virtually":[132],"current":[134],"focus":[138],"improving":[140],"F-score,":[141],"aiming":[142],"balance":[144],"both":[148],"many":[153],"realistic":[154],"scenarios":[155],"involving":[156],"corpora,":[158],"one":[159],"benefit":[161],"from":[163],"algorithm":[166,176,200],"than":[167,183,243],"high-recall":[169],"counterpart.":[170],"RESULTS:":[171],"We":[172],"show":[173],"our":[175,267],"achieves":[179],"better":[180],"solutions":[185],"serves":[188],"as":[189,270],"good":[191],"complement":[192],"existing":[195,206,244],"tools.":[198],"Our":[199],"improves":[201],"tools":[207],"through":[208],"simple":[209],"pipelining.":[210],"CONCLUSION:":[211],"The":[212],"significance":[213],"research":[216,223],"found":[219],"brought":[224],"perspective":[226],"studies,":[234],"believe":[237],"is":[238],"important":[240],"practice":[242],"criteria.":[246],"Given":[247],"perspective,":[251],"showed":[254],"importance":[256],"tool":[261,273],"validated":[263],"efficacy":[265],"system":[269],"candidate.":[274]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
