{"id":"https://openalex.org/W2164337735","doi":"https://doi.org/10.1186/1472-6947-12-s1-s5","title":"Semantic text mining support for lignocellulose research","display_name":"Semantic text mining support for lignocellulose research","publication_year":2012,"publication_date":"2012-04-30","ids":{"openalex":"https://openalex.org/W2164337735","doi":"https://doi.org/10.1186/1472-6947-12-s1-s5","mag":"2164337735","pmid":"https://pubmed.ncbi.nlm.nih.gov/22595090"},"language":"en","primary_location":{"id":"doi:10.1186/1472-6947-12-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-12-s1-s5","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-12-S1-S5","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-12-S1-S5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014324079","display_name":"Marie\u2010Jean Meurs","orcid":"https://orcid.org/0000-0001-8196-2153"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Marie-Jean Meurs","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada. mjmeurs@encs.concordia.ca","Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada. mjmeurs@encs.concordia.ca","institution_ids":["https://openalex.org/I60158472"]},{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017421268","display_name":"Caitlin Murphy","orcid":"https://orcid.org/0000-0002-7248-7458"},"institutions":[{"id":"https://openalex.org/I161856759","display_name":"Concordia University","ror":"https://ror.org/01qxhf360","country_code":"US","type":"education","lineage":["https://openalex.org/I161856759"]},{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Caitlin Murphy","raw_affiliation_strings":["Centre for Structural and Functional Genomics, Concordia University, Montral, QC, Canada","Department of Biology, Concordia University, Montreal, QC, Canada","Centre for Structural and Functional Genomics, Concordia University, Montr\u00e9al, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Structural and Functional Genomics, Concordia University, Montral, QC, Canada","institution_ids":["https://openalex.org/I161856759","https://openalex.org/I60158472"]},{"raw_affiliation_string":"Department of Biology, Concordia University, Montreal, QC, Canada","institution_ids":["https://openalex.org/I60158472"]},{"raw_affiliation_string":"Centre for Structural and Functional Genomics, Concordia University, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009250624","display_name":"Ingo Morgenstern","orcid":null},"institutions":[{"id":"https://openalex.org/I161856759","display_name":"Concordia University","ror":"https://ror.org/01qxhf360","country_code":"US","type":"education","lineage":["https://openalex.org/I161856759"]},{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Ingo Morgenstern","raw_affiliation_strings":["Centre for Structural and Functional Genomics, Concordia University, Montral, QC, Canada","Department of Biology, Concordia University, Montreal, QC, Canada","Centre for Structural and Functional Genomics, Concordia University, Montr\u00e9al, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Structural and Functional Genomics, Concordia University, Montral, QC, Canada","institution_ids":["https://openalex.org/I161856759","https://openalex.org/I60158472"]},{"raw_affiliation_string":"Department of Biology, Concordia University, Montreal, QC, Canada","institution_ids":["https://openalex.org/I60158472"]},{"raw_affiliation_string":"Centre for Structural and Functional Genomics, Concordia University, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109069843","display_name":"Greg Butler","orcid":null},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Greg Butler","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063451919","display_name":"Justin Powlowski","orcid":null},"institutions":[{"id":"https://openalex.org/I161856759","display_name":"Concordia University","ror":"https://ror.org/01qxhf360","country_code":"US","type":"education","lineage":["https://openalex.org/I161856759"]},{"id":"https://openalex.org/I4210148195","display_name":"Concordia University","ror":"https://ror.org/04dwckp88","country_code":"US","type":"education","lineage":["https://openalex.org/I4210148195"]},{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Justin Powlowski","raw_affiliation_strings":["Centre for Structural and Functional Genomics, Concordia University, Montral, QC, Canada","Department of Chemistry and Biochemistry, Concordia University, Montral, QC, Canada","Centre for Structural and Functional Genomics, Concordia University, Montr\u00e9al, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Structural and Functional Genomics, Concordia University, Montral, QC, Canada","institution_ids":["https://openalex.org/I161856759","https://openalex.org/I60158472"]},{"raw_affiliation_string":"Department of Chemistry and Biochemistry, Concordia University, Montral, QC, Canada","institution_ids":["https://openalex.org/I4210148195","https://openalex.org/I60158472"]},{"raw_affiliation_string":"Centre for Structural and Functional Genomics, Concordia University, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060119095","display_name":"Adrian Tsang","orcid":"https://orcid.org/0000-0002-5892-4797"},"institutions":[{"id":"https://openalex.org/I161856759","display_name":"Concordia University","ror":"https://ror.org/01qxhf360","country_code":"US","type":"education","lineage":["https://openalex.org/I161856759"]},{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Adrian Tsang","raw_affiliation_strings":["Centre for Structural and Functional Genomics, Concordia University, Montral, QC, Canada","Department of Biology, Concordia University, Montreal, QC, Canada","Centre for Structural and Functional Genomics, Concordia University, Montr\u00e9al, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Structural and Functional Genomics, Concordia University, Montral, QC, Canada","institution_ids":["https://openalex.org/I161856759","https://openalex.org/I60158472"]},{"raw_affiliation_string":"Department of Biology, Concordia University, Montreal, QC, Canada","institution_ids":["https://openalex.org/I60158472"]},{"raw_affiliation_string":"Centre for Structural and Functional Genomics, Concordia University, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004152813","display_name":"Ren\u00e9 Witte","orcid":"https://orcid.org/0000-0002-4833-075X"},"institutions":[{"id":"https://openalex.org/I4210148195","display_name":"Concordia University","ror":"https://ror.org/04dwckp88","country_code":"US","type":"education","lineage":["https://openalex.org/I4210148195"]},{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Ren\u00e9 Witte","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Concordia University, Montral, QC, Canada","Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montral, QC, Canada","institution_ids":["https://openalex.org/I60158472","https://openalex.org/I4210148195"]},{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I60158472"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5014324079"],"corresponding_institution_ids":["https://openalex.org/I60158472"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":2.553,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.90092143,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"12","issue":"S1","first_page":"S5","last_page":"S5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8274000287055969,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8274000287055969,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.054999999701976776,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0215000007301569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.595638632774353},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5388365387916565},{"id":"https://openalex.org/keywords/lignocellulosic-biomass","display_name":"Lignocellulosic biomass","score":0.42555510997772217},{"id":"https://openalex.org/keywords/biomass","display_name":"Biomass (ecology)","score":0.4166123569011688},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37673419713974},{"id":"https://openalex.org/keywords/biofuel","display_name":"Biofuel","score":0.35896533727645874},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33716028928756714},{"id":"https://openalex.org/keywords/biotechnology","display_name":"Biotechnology","score":0.2709791958332062},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1487368941307068},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.12099018692970276}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.595638632774353},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5388365387916565},{"id":"https://openalex.org/C2778234585","wikidata":"https://www.wikidata.org/wiki/Q508355","display_name":"Lignocellulosic biomass","level":3,"score":0.42555510997772217},{"id":"https://openalex.org/C115540264","wikidata":"https://www.wikidata.org/wiki/Q2945560","display_name":"Biomass (ecology)","level":2,"score":0.4166123569011688},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37673419713974},{"id":"https://openalex.org/C53991642","wikidata":"https://www.wikidata.org/wiki/Q128991","display_name":"Biofuel","level":2,"score":0.35896533727645874},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33716028928756714},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.2709791958332062},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1487368941307068},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.12099018692970276}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002480","descriptor_name":"Cellulase","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D002480","descriptor_name":"Cellulase","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D002480","descriptor_name":"Cellulase","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008031","descriptor_name":"Lignin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008031","descriptor_name":"Lignin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008031","descriptor_name":"Lignin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012109","descriptor_name":"Research Support as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012109","descriptor_name":"Research Support as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012109","descriptor_name":"Research Support as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018533","descriptor_name":"Biomass","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018533","descriptor_name":"Biomass","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018533","descriptor_name":"Biomass","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062207","descriptor_name":"Brain-Computer Interfaces","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062207","descriptor_name":"Brain-Computer Interfaces","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062207","descriptor_name":"Brain-Computer Interfaces","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1472-6947-12-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-12-s1-s5","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-12-S1-S5","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:22595090","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22595090","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:https://spectrum.library.concordia.ca:973982","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400871","display_name":"Spectrum Research Repository (Concordia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60158472","host_organization_name":"Concordia University","host_organization_lineage":["https://openalex.org/I60158472"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:7110bf4d518847659ed6b5220e8002df","is_oa":true,"landing_page_url":"https://doaj.org/article/7110bf4d518847659ed6b5220e8002df","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 12, Iss Suppl 1, p S5 (2012)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3339392","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3339392","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1472-6947-12-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-12-s1-s5","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-12-S1-S5","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6700000166893005,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320314025","display_name":"G\u00e9nome Qu\u00e9bec","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2164337735.pdf","grobid_xml":"https://content.openalex.org/works/W2164337735.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W957639803","https://openalex.org/W1510720609","https://openalex.org/W1512208874","https://openalex.org/W1553529581","https://openalex.org/W1572983596","https://openalex.org/W1573447676","https://openalex.org/W1590585844","https://openalex.org/W1646048262","https://openalex.org/W1980435465","https://openalex.org/W1987522618","https://openalex.org/W2002635898","https://openalex.org/W2003261600","https://openalex.org/W2044514479","https://openalex.org/W2053673723","https://openalex.org/W2085744057","https://openalex.org/W2096525273","https://openalex.org/W2109252435","https://openalex.org/W2122904379","https://openalex.org/W2124714582","https://openalex.org/W2132784310","https://openalex.org/W2138807684","https://openalex.org/W2141158585","https://openalex.org/W2161062388","https://openalex.org/W2163040665","https://openalex.org/W4211000692","https://openalex.org/W4250297812","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2118082495","https://openalex.org/W4387810629","https://openalex.org/W4318718172","https://openalex.org/W4386494223","https://openalex.org/W2077237662","https://openalex.org/W2567985905","https://openalex.org/W166253421","https://openalex.org/W3158165336","https://openalex.org/W3215794816","https://openalex.org/W4313500242"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biofuels":[1],"produced":[2],"from":[3,165],"biomass":[4],"are":[5],"considered":[6],"to":[7,12,70,75,106,121,137,204],"be":[8],"promising":[9],"sustainable":[10],"alternatives":[11],"fossil":[13],"fuels.":[14,67],"The":[15],"conversion":[16],"of":[17,28,50,63,80,145,151,156,163],"lignocellulose":[18,153],"into":[19],"fermentable":[20],"sugars":[21],"for":[22,83,214],"biofuels":[23],"production":[24],"requires":[25],"the":[26,46,51,59,77,86,123,138,160,174,189,212,219],"use":[27],"enzyme":[29],"cocktails":[30],"that":[31,133,170],"can":[32],"efficiently":[33],"and":[34,48,61,66,101,126,176,217,224],"economically":[35],"hydrolyze":[36],"lignocellulosic":[37],"biomass.":[38],"As":[39],"many":[40],"fungi":[41],"naturally":[42],"break":[43],"down":[44],"lignocellulose,":[45],"identification":[47],"characterization":[49],"enzymes":[52,84,169],"involved":[53],"is":[54,74,120,159,171],"a":[55,130,146,201],"key":[56],"challenge":[57,73,119],"in":[58,109,129,149,173,200,207],"research":[60],"development":[62,144],"biomass-derived":[64],"products":[65],"One":[68],"approach":[69],"meeting":[71],"this":[72,157],"mine":[76],"rapidly-expanding":[78],"repertoire":[79],"microbial":[81],"genomes":[82],"with":[85,182],"appropriate":[87,124],"catalytic":[88],"properties.":[89],"RESULTS:":[90],"Semantic":[91],"technologies,":[92],"including":[93],"natural":[94,195],"language":[95,196],"processing,":[96],"ontologies,":[97],"semantic":[98,147],"Web":[99],"services":[100],"Web-based":[102,202],"collaboration":[103],"tools,":[104],"promise":[105],"support":[107,150],"users":[108],"handling":[110],"complex":[111],"data,":[112],"thereby":[113],"facilitating":[114],"knowledge-intensive":[115],"tasks.":[116],"An":[117],"ongoing":[118,143],"select":[122],"technologies":[125],"combine":[127],"them":[128,206],"coherent":[131],"system":[132],"brings":[134],"measurable":[135],"improvements":[136],"users.":[139],"We":[140],"present":[141],"our":[142],"infrastructure":[148],"genomics-based":[152],"research.":[154],"Part":[155],"effort":[158],"automated":[161],"curation":[162],"knowledge":[164],"information":[166],"on":[167],"fungal":[168,183],"available":[172],"literature":[175,213],"genome":[177],"resources.":[178],"CONCLUSIONS:":[179],"Working":[180],"closely":[181],"biology":[184],"researchers":[185],"who":[186],"manually":[187],"curate":[188],"existing":[190],"literature,":[191],"we":[192],"developed":[193],"ontological":[194],"processing":[197],"pipelines":[198],"integrated":[199],"interface":[203],"assist":[205],"two":[208],"main":[209],"tasks:":[210],"mining":[211],"relevant":[215],"knowledge,":[216],"at":[218],"same":[220],"time":[221],"providing":[222],"rich":[223],"semantically":[225],"linked":[226],"information.":[227]},"counts_by_year":[{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":7}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
