{"id":"https://openalex.org/W1980183403","doi":"https://doi.org/10.1186/1472-6947-12-148","title":"Mining biomarker information in biomedical literature","display_name":"Mining biomarker information in biomedical literature","publication_year":2012,"publication_date":"2012-12-01","ids":{"openalex":"https://openalex.org/W1980183403","doi":"https://doi.org/10.1186/1472-6947-12-148","mag":"1980183403","pmid":"https://pubmed.ncbi.nlm.nih.gov/23249606"},"language":"en","primary_location":{"id":"doi:10.1186/1472-6947-12-148","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-12-148","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-12-148","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-12-148","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060985142","display_name":"Erfan Younesi","orcid":"https://orcid.org/0000-0001-8793-2692"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Erfan Younesi","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082933983","display_name":"Luca Toldo","orcid":"https://orcid.org/0000-0003-2027-5717"},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck KGaA, Darmstadt (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Luca Toldo","raw_affiliation_strings":["Knowledge Management, Operational Excellence & Site Coordination, Merck Serono, Merck KGaA, Darmstadt, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Knowledge Management, Operational Excellence & Site Coordination, Merck Serono, Merck KGaA, Darmstadt, Germany","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015732254","display_name":"B. G. M\u00fcller","orcid":"https://orcid.org/0000-0003-3062-8192"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bernd M\u00fcller","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060550755","display_name":"Christoph M. Friedrich","orcid":"https://orcid.org/0000-0001-7906-0038"},"institutions":[{"id":"https://openalex.org/I159743108","display_name":"Dortmund University of Applied Sciences and Arts","ror":"https://ror.org/03dv91853","country_code":"DE","type":"education","lineage":["https://openalex.org/I159743108"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph M Friedrich","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany","Department of Computer Science, University of Applied Science and Arts, Dortmund, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Department of Computer Science, University of Applied Science and Arts, Dortmund, Germany","institution_ids":["https://openalex.org/I159743108"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034934891","display_name":"Natalia Novac","orcid":null},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck KGaA, Darmstadt (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Natalia Novac","raw_affiliation_strings":["Knowledge Management, Operational Excellence & Site Coordination, Merck Serono, Merck KGaA, Darmstadt, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Knowledge Management, Operational Excellence & Site Coordination, Merck Serono, Merck KGaA, Darmstadt, Germany","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085706199","display_name":"Alexander Scheer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210113211","display_name":"Merck Serono S.A. (Switzerland)","ror":"https://ror.org/01vp49361","country_code":"CH","type":"company","lineage":["https://openalex.org/I164928964","https://openalex.org/I4210113211"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Alexander Scheer","raw_affiliation_strings":["Informatics & Knowledge Management, Merck Serono, Merck KGaA, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics & Knowledge Management, Merck Serono, Merck KGaA, Geneva, Switzerland","institution_ids":["https://openalex.org/I4210113211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I4210164149","https://openalex.org/I135140700"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077378114","display_name":"Juliane Fluck","orcid":"https://orcid.org/0000-0003-1379-7023"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Juliane Fluck","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany","institution_ids":["https://openalex.org/I4210098248"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5077378114"],"corresponding_institution_ids":["https://openalex.org/I4210098248"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":2.6872,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.90235171,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"148","last_page":"148"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.8519281148910522},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.7216706275939941},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6941545009613037},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5131719708442688},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.46555596590042114},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.4422772526741028},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4190980792045593},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.41174086928367615},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3446112275123596},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.23933875560760498},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1383885145187378},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13128358125686646},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.09423622488975525},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09106412529945374}],"concepts":[{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.8519281148910522},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.7216706275939941},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6941545009613037},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5131719708442688},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.46555596590042114},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.4422772526741028},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4190980792045593},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.41174086928367615},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3446112275123596},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.23933875560760498},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1383885145187378},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13128358125686646},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.09423622488975525},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09106412529945374},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1472-6947-12-148","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-12-148","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-12-148","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:23249606","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23249606","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:59c90814d7a84009a490282fa1c2390d","is_oa":false,"landing_page_url":"https://doaj.org/article/59c90814d7a84009a490282fa1c2390d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 12, Iss 1, p 148 (2012)","raw_type":"article"},{"id":"pmh:oai:fraunhofer.de:N-228104","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-228104.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fraunhofer SCAI","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3541249","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3541249","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:publica.fraunhofer.de:publica/230597","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/230597","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1186/1472-6947-12-148","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1472-6947-12-148","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/1472-6947-12-148","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1980183403.pdf","grobid_xml":"https://content.openalex.org/works/W1980183403.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W91108901","https://openalex.org/W1584308190","https://openalex.org/W1928047241","https://openalex.org/W1965555277","https://openalex.org/W1975299142","https://openalex.org/W1999578031","https://openalex.org/W2003446026","https://openalex.org/W2009341227","https://openalex.org/W2025065621","https://openalex.org/W2036935277","https://openalex.org/W2042990492","https://openalex.org/W2051111981","https://openalex.org/W2067738312","https://openalex.org/W2076510434","https://openalex.org/W2080075366","https://openalex.org/W2092745656","https://openalex.org/W2101727078","https://openalex.org/W2113164364","https://openalex.org/W2122723516","https://openalex.org/W2124617249","https://openalex.org/W2129113459","https://openalex.org/W2130410032","https://openalex.org/W2131872164","https://openalex.org/W2141334480","https://openalex.org/W2141869602","https://openalex.org/W2149853199","https://openalex.org/W2170752702","https://openalex.org/W2170864879","https://openalex.org/W2263798363","https://openalex.org/W2281306994","https://openalex.org/W2397228500","https://openalex.org/W4300950294"],"related_works":["https://openalex.org/W112583468","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W4298030740","https://openalex.org/W2108949684","https://openalex.org/W4246773350","https://openalex.org/W1965976436","https://openalex.org/W2012655824","https://openalex.org/W3177170977","https://openalex.org/W2326771431"],"abstract_inverted_index":{"BACKGROUND:":[0],"For":[1],"selection":[2],"and":[3,24,79,90,106,180,196,326],"evaluation":[4,225],"of":[5,9,14,19,31,51,59,71,98,122,129,147,162,169,182,217,235,244,278,295],"potential":[6],"biomarkers,":[7],"inclusion":[8],"already":[10],"published":[11,300],"information":[12,53,73,109,163,237,290,298],"is":[13,173,211,221,253],"utmost":[15],"importance.":[16],"In":[17],"spite":[18],"significant":[20],"advancements":[21],"in":[22,33,192,238,265,291,322],"text-":[23],"data-mining":[25],"techniques,":[26],"the":[27,49,55,69,113,123,148,213,232,239,245,250,257,279,306,319,323],"vast":[28],"knowledge":[29],"space":[30],"biomarkers":[32,297],"biomedical":[34],"text":[35],"has":[36],"remained":[37],"unexplored.":[38],"Existing":[39],"named":[40],"entity":[41,153],"recognition":[42],"approaches":[43],"are":[44],"not":[45],"sufficiently":[46],"selective":[47],"for":[48,75,275,318],"retrieval":[50,74,110,164,167],"biomarker":[52,72,86,114,149,236,251,273,289],"from":[54,299],"literature.":[56,240],"The":[57,108,144,160,224,262],"purpose":[58],"this":[60,99,229,266],"study":[61],"was":[62,88,101,116,132],"to":[63,256,287],"identify":[64],"textual":[65],"features":[66],"that":[67,228,269],"enhance":[68],"effectiveness":[70],"different":[76,140,158],"indication":[77],"areas":[78],"diverse":[80],"end":[81],"user":[82],"perspectives.":[83],"METHODS:":[84],"A":[85,241],"terminology":[87,100,115,150,274],"created":[89],"further":[91],"organized":[92],"into":[93],"six":[94,125],"concept":[95],"classes.":[96,126],"Performance":[97],"optimized":[102],"towards":[103,309],"balanced":[104],"selectivity":[105],"specificity.":[107],"performance":[111],"using":[112,270],"evaluated":[117],"based":[118],"on":[119,134],"various":[120],"combinations":[121],"terminology's":[124],"Further":[127],"validation":[128],"these":[130],"results":[131,220,226],"performed":[133],"two":[135,139],"independent":[136],"corpora":[137],"representing":[138],"neurodegenerative":[141],"diseases.":[142],"RESULTS:":[143],"current":[145],"state":[146],"contains":[151],"119":[152],"classes":[154,205],"supported":[155],"by":[156,175],"1890":[157],"synonyms.":[159],"result":[161],"shows":[165],"improved":[166],"rate":[168],"informative":[170],"abstracts,":[171],"which":[172],"achieved":[174],"including":[176,249],"clinical":[177],"management":[178],"terms":[179],"evidence":[181],"gene/protein":[183,186],"alterations":[184],"(e.g.":[185,206],"expression":[187],"status":[188],"or":[189,208],"certain":[190],"polymorphisms)":[191],"combination":[193],"with":[194],"disease":[195],"gene":[197],"name":[198],"recognition.":[199],"When":[200],"additional":[201],"filtering":[202],"through":[203,259],"other":[204],"diagnostic":[207],"prognostic":[209],"methods)":[210],"applied,":[212],"typical":[214],"high":[215],"number":[216],"unspecific":[218],"search":[219,246],"significantly":[222],"reduced.":[223],"suggest":[227],"approach":[230,263],"enables":[231],"automated":[233,276],"identification":[234],"demo":[242],"version":[243],"engine":[247],"SCAIView,":[248],"retrieval,":[252],"made":[254],"available":[255],"public":[258],"http://www.scaiview.com/scaiview-academia.html.":[260],"CONCLUSIONS:":[261],"presented":[264],"paper":[267],"demonstrates":[268],"a":[271],"dedicated":[272],"analysis":[277],"scientific":[280],"literature":[281],"maybe":[282],"helpful":[283],"as":[284,305],"an":[285],"aid":[286],"finding":[288],"text.":[292],"Successful":[293],"extraction":[294],"candidate":[296],"resources":[301],"can":[302],"be":[303,316],"considered":[304],"first":[307],"step":[308],"developing":[310],"novel":[311],"hypotheses.":[312],"These":[313],"hypotheses":[314],"will":[315],"valuable":[317],"early":[320],"decision-making":[321],"drug":[324],"discovery":[325],"development":[327],"process.":[328]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
