{"id":"https://openalex.org/W1489942343","doi":"https://doi.org/10.1186/1471-2342-5-7","title":"Mindboggle: Automated brain labeling with multiple atlases","display_name":"Mindboggle: Automated brain labeling with multiple atlases","publication_year":2005,"publication_date":"2005-10-05","ids":{"openalex":"https://openalex.org/W1489942343","doi":"https://doi.org/10.1186/1471-2342-5-7","mag":"1489942343","pmid":"https://pubmed.ncbi.nlm.nih.gov/16202176"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2342-5-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2342-5-7","pdf_url":"https://bmcmedimaging.biomedcentral.com/counter/pdf/10.1186/1471-2342-5-7","source":{"id":"https://openalex.org/S6505649","display_name":"BMC Medical Imaging","issn_l":"1471-2342","issn":["1471-2342"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedimaging.biomedcentral.com/counter/pdf/10.1186/1471-2342-5-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086127905","display_name":"Arno Klein","orcid":"https://orcid.org/0000-0002-0707-2889"},"institutions":[{"id":"https://openalex.org/I102179633","display_name":"New School","ror":"https://ror.org/02tvcev59","country_code":"US","type":"education","lineage":["https://openalex.org/I102179633"]},{"id":"https://openalex.org/I1320675724","display_name":"Parsons (United States)","ror":"https://ror.org/001sezm06","country_code":"US","type":"company","lineage":["https://openalex.org/I1320675724"]},{"id":"https://openalex.org/I3133415137","display_name":"Aryabhatta Knowledge University","ror":"https://ror.org/01h55mk94","country_code":"IN","type":"education","lineage":["https://openalex.org/I3133415137"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["IN","US"],"is_corresponding":true,"raw_author_name":"Arno Klein","raw_affiliation_strings":["fMRI Research Center, Columbia University, New York, USA. arno@binarybottle.com","fMRI Research Center, Columbia University, New York, USA","Parsons Institute for Information Mapping, The New School, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"fMRI Research Center, Columbia University, New York, USA. arno@binarybottle.com","institution_ids":["https://openalex.org/I3133415137"]},{"raw_affiliation_string":"fMRI Research Center, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Parsons Institute for Information Mapping, The New School, New York, USA","institution_ids":["https://openalex.org/I102179633","https://openalex.org/I1320675724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029324319","display_name":"Brett D. Mensh","orcid":"https://orcid.org/0000-0003-2288-054X"},"institutions":[{"id":"https://openalex.org/I33086117","display_name":"New York Psychoanalytic Society and Institute","ror":"https://ror.org/05azenf09","country_code":"US","type":"other","lineage":["https://openalex.org/I33086117"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brett Mensh","raw_affiliation_strings":["New York State Psychiatric Institute, Columbia University, New York, USA","New York State Psychiatric Institute/Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New York State Psychiatric Institute, Columbia University, New York, USA","institution_ids":["https://openalex.org/I33086117","https://openalex.org/I78577930"]},{"raw_affiliation_string":"New York State Psychiatric Institute/Columbia University, New York, USA","institution_ids":["https://openalex.org/I33086117","https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051194003","display_name":"Satrajit Ghosh","orcid":"https://orcid.org/0000-0002-5312-6729"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Satrajit Ghosh","raw_affiliation_strings":["Speech Communication Group, Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Speech Communication Group, Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045455853","display_name":"Jason A. Tourville","orcid":"https://orcid.org/0000-0002-7197-2427"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Tourville","raw_affiliation_strings":["Department of Cognitive and Neural Systems, Boston University, Boston, USA","Dept. of Cognitive and Neural Systems, Boston University, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cognitive and Neural Systems, Boston University, Boston, USA","institution_ids":["https://openalex.org/I111088046"]},{"raw_affiliation_string":"Dept. of Cognitive and Neural Systems, Boston University, Boston, USA","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017094330","display_name":"Joy Hirsch","orcid":"https://orcid.org/0000-0002-1418-6489"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joy Hirsch","raw_affiliation_strings":["fMRI Research Center, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"fMRI Research Center, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5086127905"],"corresponding_institution_ids":["https://openalex.org/I102179633","https://openalex.org/I1320675724","https://openalex.org/I3133415137","https://openalex.org/I78577930"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.1618,"has_fulltext":true,"cited_by_count":116,"citation_normalized_percentile":{"value":0.75492264,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"7","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11094","display_name":"Face Recognition and Perception","score":0.3472999930381775,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11094","display_name":"Face Recognition and Perception","score":0.3472999930381775,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.1728000044822693,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.08020000159740448,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7732899188995361},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47295019030570984},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3342995047569275},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.32565563917160034}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7732899188995361},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47295019030570984},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3342995047569275},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.32565563917160034}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2342-5-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2342-5-7","pdf_url":"https://bmcmedimaging.biomedcentral.com/counter/pdf/10.1186/1471-2342-5-7","source":{"id":"https://openalex.org/S6505649","display_name":"BMC Medical Imaging","issn_l":"1471-2342","issn":["1471-2342"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Imaging","raw_type":"journal-article"},{"id":"pmid:16202176","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16202176","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical imaging","raw_type":null},{"id":"pmh:oai:doaj.org/article:795c03d30ac441369f5a11bac90d426c","is_oa":false,"landing_page_url":"https://doaj.org/article/795c03d30ac441369f5a11bac90d426c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Imaging, Vol 5, Iss 1, p 7 (2005)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:97524","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1283974","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:open.bu.edu:2144/2644","is_oa":false,"landing_page_url":"https://hdl.handle.net/2144/2644","pdf_url":null,"source":{"id":"https://openalex.org/S4306402183","display_name":"OpenBU/Boston University Institutional Repository (Boston University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I111088046","host_organization_name":"Boston University","host_organization_lineage":["https://openalex.org/I111088046"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1283974","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1283974","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Imaging","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2342-5-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2342-5-7","pdf_url":"https://bmcmedimaging.biomedcentral.com/counter/pdf/10.1186/1471-2342-5-7","source":{"id":"https://openalex.org/S6505649","display_name":"BMC Medical Imaging","issn_l":"1471-2342","issn":["1471-2342"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Imaging","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1489942343.pdf","grobid_xml":"https://content.openalex.org/works/W1489942343.grobid-xml"},"referenced_works_count":91,"referenced_works":["https://openalex.org/W6368054","https://openalex.org/W137011289","https://openalex.org/W1480334507","https://openalex.org/W1484828417","https://openalex.org/W1488682094","https://openalex.org/W1531521015","https://openalex.org/W1533814806","https://openalex.org/W1548225394","https://openalex.org/W1558456358","https://openalex.org/W1563622255","https://openalex.org/W1564699816","https://openalex.org/W1571046051","https://openalex.org/W1571626300","https://openalex.org/W1580568906","https://openalex.org/W1585251385","https://openalex.org/W1586492482","https://openalex.org/W1603316368","https://openalex.org/W1773005811","https://openalex.org/W1777255775","https://openalex.org/W1802062438","https://openalex.org/W1804395613","https://openalex.org/W1933819638","https://openalex.org/W1972099553","https://openalex.org/W1975111110","https://openalex.org/W1980960123","https://openalex.org/W1985864801","https://openalex.org/W1989813450","https://openalex.org/W1993812358","https://openalex.org/W1994899724","https://openalex.org/W1998710995","https://openalex.org/W2004293194","https://openalex.org/W2007153649","https://openalex.org/W2008198177","https://openalex.org/W2018862299","https://openalex.org/W2019161608","https://openalex.org/W2021461280","https://openalex.org/W2030532121","https://openalex.org/W2035415121","https://openalex.org/W2035964780","https://openalex.org/W2041398617","https://openalex.org/W2044430782","https://openalex.org/W2047889090","https://openalex.org/W2049247209","https://openalex.org/W2053133374","https://openalex.org/W2053555512","https://openalex.org/W2056674659","https://openalex.org/W2058046532","https://openalex.org/W2063237661","https://openalex.org/W2069456254","https://openalex.org/W2071881327","https://openalex.org/W2077056138","https://openalex.org/W2079785555","https://openalex.org/W2079810663","https://openalex.org/W2080822231","https://openalex.org/W2087322538","https://openalex.org/W2094063713","https://openalex.org/W2094805764","https://openalex.org/W2097376428","https://openalex.org/W2102214751","https://openalex.org/W2102849263","https://openalex.org/W2110344324","https://openalex.org/W2110437310","https://openalex.org/W2114218028","https://openalex.org/W2122558050","https://openalex.org/W2122673257","https://openalex.org/W2123983635","https://openalex.org/W2128409098","https://openalex.org/W2129965408","https://openalex.org/W2132862109","https://openalex.org/W2133584444","https://openalex.org/W2136148445","https://openalex.org/W2136573752","https://openalex.org/W2141796362","https://openalex.org/W2143736779","https://openalex.org/W2143895814","https://openalex.org/W2145140396","https://openalex.org/W2147786839","https://openalex.org/W2148347694","https://openalex.org/W2148726987","https://openalex.org/W2150593226","https://openalex.org/W2151130155","https://openalex.org/W2152763681","https://openalex.org/W2154906251","https://openalex.org/W2155752633","https://openalex.org/W2158275940","https://openalex.org/W2169011823","https://openalex.org/W2169366712","https://openalex.org/W2169847622","https://openalex.org/W2171191802","https://openalex.org/W2462263071","https://openalex.org/W4245310318"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W3204019825"],"abstract_inverted_index":{"BACKGROUND:":[0],"To":[1],"make":[2],"inferences":[3],"about":[4],"brain":[5,46,77,98,103,154,203,240,256,288],"structures":[6,41],"or":[7],"activity":[8,43],"across":[9,20],"multiple":[10],"individuals,":[11],"one":[12],"first":[13],"needs":[14],"to":[15,35,39,74,94,173,250,262,284],"determine":[16],"the":[17,80,85,119,139,158,210,244],"structural":[18,54],"correspondences":[19,55],"their":[21],"image":[22,61,99,104,204],"data.":[23,48,100],"We":[24],"have":[25],"recently":[26],"developed":[27],"Mindboggle":[28,185,198,266],"as":[29],"a":[30,68,75,114,134,174,181,187,193,200,224,253],"fully":[31],"automated,":[32],"feature-matching":[33],"approach":[34],"assign":[36],"anatomical":[37],"labels":[38,71,150,160,186,199,217,273,279],"cortical":[40],"and":[42,59,131,280],"in":[44,192],"human":[45,97,110,201,254],"MRI":[47],"Label":[49],"assignment":[50,277],"is":[51,112,129,132,218,227],"based":[52,137,274],"on":[53,138,275],"between":[56],"labeled":[57],"atlases":[58,93,122,142,232],"unlabeled":[60],"data,":[62],"where":[63],"an":[64],"atlas":[65,177,191,226],"consists":[66],"of":[67,70,87,91,106,108,118,141,183,231,246,278,287],"set":[69],"manually":[72,263],"assigned":[73,113,144,149,264],"single":[76,225],"image.":[78],"In":[79],"present":[81],"work,":[82],"we":[83],"study":[84],"influence":[86],"using":[88,123],"variable":[89],"numbers":[90,230],"individual":[92,239],"nonlinearly":[95],"label":[96,115,128,212,236,252],"METHODS:":[101],"Each":[102],"voxel":[105],"each":[107,117,152,190],"20":[109],"subjects":[111],"by":[116,189],"remaining":[120],"19":[121],"Mindboggle.":[124],"The":[125,147],"most":[126],"common":[127],"selected":[130],"given":[133],"confidence":[135,270],"rating":[136],"number":[140,245],"that":[143,145,162,169],"label.":[146],"automatically":[148,251],"for":[151,161,238,272],"subject":[153,163,171,188,255],"are":[155],"compared":[156],"with":[157,205,214,260],"manual":[159,216],"(its":[164],"atlas).":[165],"Unlike":[166],"recent":[167],"approaches":[168],"transform":[170],"data":[172],"labeled,":[175],"probabilistic":[176,276],"space":[178],"(constructed":[179],"from":[180],"database":[182,194],"atlases),":[184],"independently.":[195],"RESULTS:":[196],"When":[197],"subject's":[202],"at":[206],"least":[207],"four":[208],"atlases,":[209],"resulting":[211],"agreement":[213],"coregistered":[215],"significantly":[219,234],"higher":[220,235],"than":[221],"when":[222],"only":[223],"used.":[228],"Different":[229],"provide":[233,269],"agreements":[237],"regions.":[241],"CONCLUSION:":[242],"Increasing":[243],"reference":[247],"brains":[248],"used":[249],"improves":[257],"labeling":[258],"accuracy":[259],"respect":[261],"labels.":[265],"software":[267],"can":[268],"measures":[271],"could":[281],"be":[282],"applied":[283],"large":[285],"databases":[286],"images.":[289]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
