{"id":"https://openalex.org/W2059292244","doi":"https://doi.org/10.1186/1471-2105-9-s9-s6","title":"MTAP: The Motif Tool Assessment Platform","display_name":"MTAP: The Motif Tool Assessment Platform","publication_year":2008,"publication_date":"2008-08-12","ids":{"openalex":"https://openalex.org/W2059292244","doi":"https://doi.org/10.1186/1471-2105-9-s9-s6","mag":"2059292244","pmid":"https://pubmed.ncbi.nlm.nih.gov/18793470"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-s9-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s9-s6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S9-S6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S9-S6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042633311","display_name":"Daniel Quest","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]},{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel Quest","raw_affiliation_strings":["College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA. djquest@unmc.edu","College of Information Science & Technology, University of Nebraska at Omaha, Omaha, USA","Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA. djquest@unmc.edu","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science & Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005196882","display_name":"Kathryn Dempsey","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kathryn Dempsey","raw_affiliation_strings":["College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA","College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082446913","display_name":"Mohammad Shafiullah","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad Shafiullah","raw_affiliation_strings":["College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA","College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036016911","display_name":"Dhundy Bastola","orcid":"https://orcid.org/0000-0003-1128-4451"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dhundy Bastola","raw_affiliation_strings":["College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA","College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047703641","display_name":"Hesham Ali","orcid":"https://orcid.org/0000-0001-6675-7987"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]},{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hesham Ali","raw_affiliation_strings":["College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA","Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha NE. 68182-0694, USA","University of Nebraska at Omaha","University of Nebraska Medical Center"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science & Technology, University of Nebraska at Omaha, Omaha NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha NE. 68182-0694, USA","institution_ids":["https://openalex.org/I59130452"]},{"raw_affiliation_string":"University of Nebraska at Omaha","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"University of Nebraska Medical Center","institution_ids":["https://openalex.org/I59130452"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5042633311"],"corresponding_institution_ids":["https://openalex.org/I122266389","https://openalex.org/I59130452"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9815,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.74862914,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"9","issue":"S9","first_page":"S6","last_page":"S6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9229999780654907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9229999780654907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10268","display_name":"Developmental Biology and Gene Regulation","score":0.011599999852478504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.004600000102072954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.7867183685302734},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5654688477516174},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5560071468353271},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5024690628051758},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.48470115661621094},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.37384098768234253},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3558807373046875},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3504858613014221},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20499703288078308},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18559834361076355},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18418830633163452}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.7867183685302734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5654688477516174},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5560071468353271},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5024690628051758},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.48470115661621094},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.37384098768234253},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3558807373046875},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3504858613014221},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20499703288078308},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18559834361076355},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18418830633163452},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-9-s9-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s9-s6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S9-S6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18793470","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18793470","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:fffccdd30cc44e9ab9056f3d8fc4fdd9","is_oa":false,"landing_page_url":"https://doaj.org/article/fffccdd30cc44e9ab9056f3d8fc4fdd9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss Suppl 9, p S6 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2537577","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2537577","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-s9-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s9-s6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S9-S6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G3942088406","display_name":null,"funder_award_id":"P20 RR16469","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G7508989939","display_name":null,"funder_award_id":"P20 RR16469","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8890314909","display_name":"Nebraska EPSCoR Infrastructure Improvement Grant","funder_award_id":"0091900","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2059292244.pdf","grobid_xml":"https://content.openalex.org/works/W2059292244.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1592870802","https://openalex.org/W1594947347","https://openalex.org/W1867995571","https://openalex.org/W1966448776","https://openalex.org/W1984053739","https://openalex.org/W1987412142","https://openalex.org/W1988393300","https://openalex.org/W1998300401","https://openalex.org/W2003967338","https://openalex.org/W2014869951","https://openalex.org/W2025474488","https://openalex.org/W2037940015","https://openalex.org/W2055016234","https://openalex.org/W2063732674","https://openalex.org/W2073850887","https://openalex.org/W2077606580","https://openalex.org/W2107522712","https://openalex.org/W2110455321","https://openalex.org/W2115761267","https://openalex.org/W2115979107","https://openalex.org/W2120710794","https://openalex.org/W2129422961","https://openalex.org/W2132721032","https://openalex.org/W2134591904","https://openalex.org/W2141224484","https://openalex.org/W2141408320","https://openalex.org/W2145091349","https://openalex.org/W2147415348","https://openalex.org/W2148014281","https://openalex.org/W2152824658","https://openalex.org/W2154044807","https://openalex.org/W2158698691","https://openalex.org/W2162111678","https://openalex.org/W2168157737"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2368037387","https://openalex.org/W2073661767","https://openalex.org/W2380185347","https://openalex.org/W2370034659","https://openalex.org/W2117168988","https://openalex.org/W2103777723","https://openalex.org/W2159636084","https://openalex.org/W2610941444"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,94],"recent":[2],"years,":[3],"substantial":[4],"effort":[5,79,106],"has":[6],"been":[7],"applied":[8],"to":[9,24,46,82,108,178],"de":[10,110],"novo":[11,111],"regulatory":[12,26,112,122,184],"motif":[13,71,113,123,129,185],"discovery.":[14],"At":[15],"this":[16,95],"time,":[17],"more":[18,44],"than":[19],"150":[20],"software":[21,39],"tools":[22,49],"exist":[23],"detect":[25],"binding":[27],"sites":[28],"given":[29],"a":[30,99,154,175],"set":[31],"of":[32,38,66,91,156,182,192],"genomic":[33],"sequences.":[34],"As":[35,153],"the":[36,48,51,60,67,105,179],"number":[37],"packages":[40],"increases,":[41],"it":[42,127],"becomes":[43],"important":[45],"identify":[47],"with":[50],"best":[52],"performance":[53],"characteristics":[54],"for":[55,149],"specific":[56],"problem":[57,90,181],"domains.":[58],"Identifying":[59],"correct":[61],"tool":[62,131],"is":[63],"difficult":[64],"because":[65],"great":[68],"variability":[69],"in":[70,88,125],"detection":[72],"software.":[73,115],"Consequently,":[74],"many":[75,137,150],"labs":[76],"spend":[77],"considerable":[78],"testing":[80],"methods":[81],"find":[83],"one":[84],"that":[85,102,126,134],"works":[86],"well":[87],"their":[89],"interest.":[92],"RESULTS:":[93],"work,":[96],"we":[97,158],"propose":[98],"method":[100],"(MTAP)":[101],"substantially":[103],"reduces":[104],"required":[107,136],"assess":[109],"discovery":[114,130,186],"MTAP":[116,173,193],"differs":[117],"from":[118,197],"previous":[119],"attempts":[120],"at":[121],"assessment":[124],"automates":[128],"pipelines":[132],"(something":[133],"traditionally":[135],"manual":[138],"steps),":[139],"automatically":[140],"constructs":[141],"orthologous":[142],"upstream":[143],"sequences,":[144],"and":[145,169],"provides":[146],"automated":[147],"benchmarks":[148,161],"popular":[151],"tools.":[152],"proof":[155],"concept,":[157],"have":[159],"run":[160],"over":[162],"human,":[163],"mouse,":[164],"fly,":[165],"yeast,":[166],"E.":[167],"coli":[168],"B.":[170],"subtilis.":[171],"CONCLUSION:":[172],"presents":[174],"new":[176],"approach":[177],"challenging":[180],"assessing":[183],"methods.":[187],"The":[188],"most":[189],"current":[190],"version":[191],"can":[194],"be":[195],"downloaded":[196],"http://biobase.ist.unomaha.edu/":[198]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
