{"id":"https://openalex.org/W2087468590","doi":"https://doi.org/10.1186/1471-2105-9-s4-s4","title":"Ontology-based, Tissue MicroArray oriented, image centered tissue bank","display_name":"Ontology-based, Tissue MicroArray oriented, image centered tissue bank","publication_year":2008,"publication_date":"2008-04-01","ids":{"openalex":"https://openalex.org/W2087468590","doi":"https://doi.org/10.1186/1471-2105-9-s4-s4","mag":"2087468590","pmid":"https://pubmed.ncbi.nlm.nih.gov/18460177"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-s4-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s4-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S4-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S4-S4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038797492","display_name":"Federica Viti","orcid":"https://orcid.org/0000-0002-9651-8896"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I83816512","display_name":"University of Genoa","ror":"https://ror.org/0107c5v14","country_code":"IT","type":"education","lineage":["https://openalex.org/I83816512"]},{"id":"https://openalex.org/I4210124735","display_name":"Istituto per le Tecnologie Didattiche","ror":"https://ror.org/02xz4xc25","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210124735","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Federica Viti","raw_affiliation_strings":["Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, Segrate (Milan) 20090, Italy. federica.viti@itb.cnr.it","Biolab - Department of Computer Science, Control Systems and Telecommunications (DIST) - University of Genoa, Genoa, Italy","Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, Segrate (Milan) 20090, Italy. federica.viti@itb.cnr.it","institution_ids":["https://openalex.org/I4210154278","https://openalex.org/I4210124735"]},{"raw_affiliation_string":"Biolab - Department of Computer Science, Control Systems and Telecommunications (DIST) - University of Genoa, Genoa, Italy","institution_ids":["https://openalex.org/I83816512"]},{"raw_affiliation_string":"Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), Italy","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026770450","display_name":"Ivan Merelli","orcid":"https://orcid.org/0000-0003-3587-3680"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ivan Merelli","raw_affiliation_strings":["Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), 20090, Italy","Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), 20090, Italy","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), Italy","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046326452","display_name":"Andrea Caprera","orcid":null},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Caprera","raw_affiliation_strings":["Parco Tecnologico Padano, Cascina Codazza (Lodi), 26900, Italy","Parco Tecnologico Padano, Cascina Codazza (Lodi), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Cascina Codazza (Lodi), 26900, Italy","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"Parco Tecnologico Padano, Cascina Codazza (Lodi), Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042603393","display_name":"Barbara Lazzari","orcid":"https://orcid.org/0000-0002-9558-914X"},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Barbara Lazzari","raw_affiliation_strings":["Parco Tecnologico Padano, Cascina Codazza (Lodi), 26900, Italy","Parco Tecnologico Padano, Cascina Codazza (Lodi), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Cascina Codazza (Lodi), 26900, Italy","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"Parco Tecnologico Padano, Cascina Codazza (Lodi), Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112296518","display_name":"Alessandra Stella","orcid":null},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandra Stella","raw_affiliation_strings":["Parco Tecnologico Padano, Cascina Codazza (Lodi), 26900, Italy","Parco Tecnologico Padano, Cascina Codazza (Lodi), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Cascina Codazza (Lodi), 26900, Italy","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"Parco Tecnologico Padano, Cascina Codazza (Lodi), Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088629765","display_name":"Luciano Milanesi","orcid":"https://orcid.org/0000-0002-1201-3939"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luciano Milanesi","raw_affiliation_strings":["Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), 20090, Italy","Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), 20090, Italy","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Istituto di Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Segrate (Milan), Italy","institution_ids":["https://openalex.org/I4210154278"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5038797492"],"corresponding_institution_ids":["https://openalex.org/I4210124735","https://openalex.org/I4210154278","https://openalex.org/I83816512"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.4022,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.80636703,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"9","issue":"S4","first_page":"S4","last_page":"S4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6945000290870667,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6945000290870667,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1776999980211258,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.039500001817941666,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7355156540870667},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6453990936279297},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.5236032605171204},{"id":"https://openalex.org/keywords/tissue-microarray","display_name":"Tissue microarray","score":0.479610800743103},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47079411149024963},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.46438464522361755},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4562183618545532},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39081910252571106},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.3846164345741272},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3258667588233948},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2302507758140564},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.19597521424293518},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11154073476791382},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11036631464958191}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7355156540870667},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6453990936279297},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.5236032605171204},{"id":"https://openalex.org/C193270364","wikidata":"https://www.wikidata.org/wiki/Q17141925","display_name":"Tissue microarray","level":3,"score":0.479610800743103},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47079411149024963},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.46438464522361755},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4562183618545532},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39081910252571106},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.3846164345741272},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3258667588233948},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2302507758140564},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.19597521424293518},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11154073476791382},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11036631464958191},{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007558","descriptor_name":"Italy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007558","descriptor_name":"Italy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007558","descriptor_name":"Italy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-9-s4-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s4-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S4-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18460177","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18460177","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:1b0c33453d2f41de8216b7f9bf785589","is_oa":true,"landing_page_url":"https://doaj.org/article/1b0c33453d2f41de8216b7f9bf785589","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss Suppl 4, p S4 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2367631","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2367631","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-s4-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s4-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S4-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6299999952316284}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2087468590.pdf","grobid_xml":"https://content.openalex.org/works/W2087468590.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W39412908","https://openalex.org/W174753650","https://openalex.org/W1561138184","https://openalex.org/W1567295580","https://openalex.org/W1871852719","https://openalex.org/W1971538947","https://openalex.org/W2034978601","https://openalex.org/W2087810003","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2106484028","https://openalex.org/W2144286975","https://openalex.org/W2169742216"],"related_works":["https://openalex.org/W2943416042","https://openalex.org/W1544923801","https://openalex.org/W3152114242","https://openalex.org/W77579337","https://openalex.org/W2024853484","https://openalex.org/W2086336666","https://openalex.org/W1558015528","https://openalex.org/W1496974872","https://openalex.org/W2408835720","https://openalex.org/W1483316219"],"abstract_inverted_index":{"BACKGROUND:":[0],"Tissue":[1,48,83,108],"MicroArray":[2,49,84,109],"technique":[3],"is":[4,65,132,143,192],"becoming":[5],"increasingly":[6],"important":[7],"in":[8,91,187],"pathology":[9,156,218],"for":[10,53,121,126,134,150],"the":[11,43,68,96,105,174,181,196,201,216,220],"validation":[12],"of":[13,70,98,107,184],"experimental":[14],"data":[15,71],"from":[16],"transcriptomic":[17],"analysis.":[18],"This":[19],"approach":[20],"produces":[21],"many":[22],"images":[23,124],"which":[24,131],"need":[25],"to":[26,36,47,88,146,153,169,194],"be":[27],"properly":[28],"managed,":[29],"if":[30],"possible":[31,145,193],"with":[32,73,180,203],"an":[33,166],"infrastructure":[34],"able":[35],"support":[37,89],"tissue":[38,101,123],"sharing":[39,102],"between":[40,215],"institutes.":[41],"Moreover,":[42,137,190],"available":[44],"frameworks":[45],"oriented":[46,86],"provide":[50],"good":[51],"storage":[52],"clinical":[54],"patient,":[55],"sample":[56],"treatment":[57],"and":[58,111,125,157,176,219],"block":[59],"construction":[60],"information,":[61],"but":[62],"their":[63],"utility":[64],"limited":[66],"by":[67,200],"lack":[69],"integration":[72],"biomolecular":[74],"information.":[75],"RESULTS:":[76],"In":[77],"this":[78,162],"work":[79],"we":[80],"propose":[81],"a":[82,204],"web":[85,148],"system":[87,116],"researchers":[90],"managing":[92],"bio-samples":[93],"and,":[94],"through":[95],"use":[97],"ontologies,":[99],"enables":[100],"aimed":[103],"at":[104],"design":[106],"experiments":[110],"results":[112,179],"evaluation.":[113],"Indeed,":[114],"our":[115],"provides":[117],"ontological":[118,182,197],"description":[119,168,183,198],"both":[120,155],"pre-analysis":[122],"post-process":[127],"analysis":[128],"image":[129,171],"results,":[130],"crucial":[133],"information":[135],"exchange.":[136],"working":[138],"on":[139],"well-defined":[140],"terms":[141],"it":[142,191],"then":[144],"query":[147],"resources":[149],"literature":[151],"articles":[152],"integrate":[154,178,195],"bioinformatics":[158],"data.":[159],"CONCLUSIONS:":[160],"Using":[161],"system,":[163],"users":[164],"associate":[165],"ontology-based":[167],"each":[170],"uploaded":[172],"into":[173],"database":[175],"also":[177],"biosequences":[185],"identified":[186],"every":[188],"tissue.":[189],"provided":[199],"user":[202],"full":[205],"compliant":[206],"gene":[207],"ontology":[208],"definition,":[209],"enabling":[210],"statistical":[211],"studies":[212],"about":[213],"correlation":[214],"analyzed":[217],"most":[221],"commonly":[222],"related":[223],"biological":[224],"processes.":[225]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}