{"id":"https://openalex.org/W1993862291","doi":"https://doi.org/10.1186/1471-2105-9-s4-s12","title":"Bio-jETI: a service integration, design, and provisioning platform for orchestrated bioinformatics processes","display_name":"Bio-jETI: a service integration, design, and provisioning platform for orchestrated bioinformatics processes","publication_year":2008,"publication_date":"2008-04-01","ids":{"openalex":"https://openalex.org/W1993862291","doi":"https://doi.org/10.1186/1471-2105-9-s4-s12","mag":"1993862291","pmid":"https://pubmed.ncbi.nlm.nih.gov/18460173"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-s4-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s4-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S4-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S4-S12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013165259","display_name":"Tiziana Margaria","orcid":"https://orcid.org/0000-0002-5547-9739"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tiziana Margaria","raw_affiliation_strings":["Universit\u00e4t Potsdam, D-14482 Potsdam, Germany. margaria@cs.uni-potsdam.de","Chair of Service and Software Engineering, Universit\u00e4t Potsdam, Potsdam, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Potsdam, D-14482 Potsdam, Germany. margaria@cs.uni-potsdam.de","institution_ids":["https://openalex.org/I176453806"]},{"raw_affiliation_string":"Chair of Service and Software Engineering, Universit\u00e4t Potsdam, Potsdam, Germany","institution_ids":["https://openalex.org/I176453806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038401310","display_name":"Christian Kubczak","orcid":null},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]},{"id":"https://openalex.org/I4210087817","display_name":"Software (Germany)","ror":"https://ror.org/004g36n56","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210087817"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christian Kubczak","raw_affiliation_strings":["Chair of Software Engineering, Dortmund Technical University, D-44227, Dortmund, Germany","Chair of Software Engineering, Dortmund Technical University, Dortmund, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Software Engineering, Dortmund Technical University, D-44227, Dortmund, Germany","institution_ids":["https://openalex.org/I200332995","https://openalex.org/I4210087817"]},{"raw_affiliation_string":"Chair of Software Engineering, Dortmund Technical University, Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078808456","display_name":"Bernhard Steffen","orcid":"https://orcid.org/0000-0001-9619-1558"},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bernhard Steffen","raw_affiliation_strings":["Chair of Programming Systems, Dortmund Technical University, D-44227, Dortmund, Germany","Chair of Programming Systems, Dortmund Technical University, Dortmund, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Programming Systems, Dortmund Technical University, D-44227, Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]},{"raw_affiliation_string":"Chair of Programming Systems, Dortmund Technical University, Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038401310"],"corresponding_institution_ids":["https://openalex.org/I200332995","https://openalex.org/I4210087817"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":20.8771,"has_fulltext":true,"cited_by_count":56,"citation_normalized_percentile":{"value":0.99121503,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"9","issue":"S4","first_page":"S12","last_page":"S12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9714000225067139,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/provisioning","display_name":"Provisioning","score":0.4840826094150543},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4835629165172577},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.45186808705329895},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42280322313308716},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.36647793650627136},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.354576051235199},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3163544237613678},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12369999289512634},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1135876476764679},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08968189358711243},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0896582305431366}],"concepts":[{"id":"https://openalex.org/C172191483","wikidata":"https://www.wikidata.org/wiki/Q1071806","display_name":"Provisioning","level":2,"score":0.4840826094150543},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4835629165172577},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.45186808705329895},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42280322313308716},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.36647793650627136},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.354576051235199},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3163544237613678},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12369999289512634},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1135876476764679},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08968189358711243},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0896582305431366}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-9-s4-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s4-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S4-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18460173","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18460173","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2367639","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2367639","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-s4-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s4-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S4-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5099999904632568}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1993862291.pdf","grobid_xml":"https://content.openalex.org/works/W1993862291.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W76930982","https://openalex.org/W1503602219","https://openalex.org/W1523375725","https://openalex.org/W1577231857","https://openalex.org/W1814568923","https://openalex.org/W1964010911","https://openalex.org/W1983833794","https://openalex.org/W2015966716","https://openalex.org/W2033018395","https://openalex.org/W2081556416","https://openalex.org/W2100638355","https://openalex.org/W2104093259","https://openalex.org/W2104984729","https://openalex.org/W2106112636","https://openalex.org/W2112561088","https://openalex.org/W2119149970","https://openalex.org/W2122371095","https://openalex.org/W2124532805","https://openalex.org/W2127458318","https://openalex.org/W2133385231","https://openalex.org/W2138282870","https://openalex.org/W2139846209","https://openalex.org/W2149895172","https://openalex.org/W2162541975","https://openalex.org/W2167612084","https://openalex.org/W2501647857","https://openalex.org/W4206355825","https://openalex.org/W4237089150","https://openalex.org/W4237453865","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2017432143","https://openalex.org/W1973694374","https://openalex.org/W2983574358","https://openalex.org/W2370475531","https://openalex.org/W4385924768","https://openalex.org/W4256551238","https://openalex.org/W2610550183","https://openalex.org/W2258161702","https://openalex.org/W2207720586","https://openalex.org/W4386390011"],"abstract_inverted_index":{"BACKGROUND:":[0],"With":[1],"Bio-jETI,":[2],"we":[3],"introduce":[4],"a":[5,20,51,68,80,115],"service":[6,59,69,85,102],"platform":[7],"for":[8,31,45,62],"interdisciplinary":[9,84],"work":[10],"on":[11],"biological":[12],"application":[13,22],"domains":[14],"and":[15,29,48,56,71,87,107,110,117],"illustrate":[16],"its":[17],"use":[18,108],"in":[19,27,83,96,114],"concrete":[21],"concerning":[23],"statistical":[24],"data":[25],"processing":[26],"R":[28],"xcms":[30],"an":[32],"LC/MS":[33],"analysis":[34],"of":[35],"FAAH":[36],"gene":[37],"knockout.":[38],"METHODS:":[39],"Bio-jETI":[40,74],"uses":[41],"the":[42,57,76],"jABC":[43],"environment":[44],"service-oriented":[46],"modeling":[47,54],"design":[49],"as":[50,104],"graphical":[52],"process":[53,105],"tool":[55,64],"jETI":[58],"integration":[60],"technology":[61,82,88],"remote":[63],"execution.":[65],"CONCLUSIONS:":[66],"As":[67],"definition":[70],"provisioning":[72],"platform,":[73],"has":[75],"potential":[77],"to":[78],"become":[79],"core":[81],"orchestration":[86],"transfer.":[89],"Domain":[90],"experts,":[91],"like":[92],"biologists":[93],"not":[94],"trained":[95],"computer":[97],"science,":[98],"directly":[99],"define":[100],"complex":[101,111],"orchestrations":[103],"models":[106],"efficient":[109],"bioinformatics":[112],"tools":[113],"simple":[116],"intuitive":[118],"way.":[119]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":8}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
