{"id":"https://openalex.org/W2131354047","doi":"https://doi.org/10.1186/1471-2105-9-s2-s9","title":"Version VI of the ESTree db: an improved tool for peach transcriptome analysis","display_name":"Version VI of the ESTree db: an improved tool for peach transcriptome analysis","publication_year":2008,"publication_date":"2008-03-01","ids":{"openalex":"https://openalex.org/W2131354047","doi":"https://doi.org/10.1186/1471-2105-9-s2-s9","mag":"2131354047","pmid":"https://pubmed.ncbi.nlm.nih.gov/18387211"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-s2-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s2-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S2-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S2-S9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042603393","display_name":"Barbara Lazzari","orcid":"https://orcid.org/0000-0002-9558-914X"},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Barbara Lazzari","raw_affiliation_strings":["Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy. barbara.lazzari@tecnoparco.org","Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy. barbara.lazzari@tecnoparco.org","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046326452","display_name":"Andrea Caprera","orcid":null},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Caprera","raw_affiliation_strings":["Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy","Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087479517","display_name":"Alberto Vecchietti","orcid":null},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Vecchietti","raw_affiliation_strings":["Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy","Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026770450","display_name":"Ivan Merelli","orcid":"https://orcid.org/0000-0003-3587-3680"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ivan Merelli","raw_affiliation_strings":["Istituto Tecnologie Biomediche, CNR, Via Fratelli Cervi 93, Segrate (MI), 20090, Italy","Istituto Tecnologie Biomediche, CNR, Segrate (MI), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto Tecnologie Biomediche, CNR, Via Fratelli Cervi 93, Segrate (MI), 20090, Italy","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Istituto Tecnologie Biomediche, CNR, Segrate (MI), Italy","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069844222","display_name":"Francesca Barale","orcid":null},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesca Barale","raw_affiliation_strings":["Universit\u00e0 degli Studi di Milano, Facolt\u00e0 di Scienze Agrarie, via Celoria 2, Milan, 20133, Italy","Universit\u00e0 degli Studi di Milano, Facolt\u00e0 di Scienze Agrarie, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e0 degli Studi di Milano, Facolt\u00e0 di Scienze Agrarie, via Celoria 2, Milan, 20133, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Universit\u00e0 degli Studi di Milano, Facolt\u00e0 di Scienze Agrarie, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088629765","display_name":"Luciano Milanesi","orcid":"https://orcid.org/0000-0002-1201-3939"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luciano Milanesi","raw_affiliation_strings":["Istituto Tecnologie Biomediche, CNR, Via Fratelli Cervi 93, Segrate (MI), 20090, Italy","Istituto Tecnologie Biomediche, CNR, Segrate (MI), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto Tecnologie Biomediche, CNR, Via Fratelli Cervi 93, Segrate (MI), 20090, Italy","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Istituto Tecnologie Biomediche, CNR, Segrate (MI), Italy","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112296518","display_name":"Alessandra Stella","orcid":null},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandra Stella","raw_affiliation_strings":["Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy","Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087276000","display_name":"Carlo Pozzi","orcid":"https://orcid.org/0000-0002-2899-177X"},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Carlo Pozzi","raw_affiliation_strings":["Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy","Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, 26900, Italy","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein - Localit\u00e0 Cascina Codazza, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042603393"],"corresponding_institution_ids":["https://openalex.org/I2799613648"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":6.877,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.96496782,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"9","issue":"S2","first_page":"S9","last_page":"S9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11546","display_name":"Plant Physiology and Cultivation Studies","score":0.296999990940094,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11546","display_name":"Plant Physiology and Cultivation Studies","score":0.296999990940094,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.1054999977350235,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10473","display_name":"Postharvest Quality and Shelf Life Management","score":0.09390000253915787,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7956382632255554},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6791443824768066},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6588349342346191},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.6378370523452759},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.567896842956543},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5428504943847656},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5318058729171753},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4339653253555298},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.42292284965515137},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4065327048301697},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34796369075775146},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3001735210418701},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2757856249809265},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21804305911064148},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13516336679458618},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12818649411201477},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11365514993667603},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11167684197425842},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10665985941886902}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7956382632255554},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6791443824768066},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6588349342346191},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.6378370523452759},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.567896842956543},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5428504943847656},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5318058729171753},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4339653253555298},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.42292284965515137},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4065327048301697},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34796369075775146},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3001735210418701},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2757856249809265},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21804305911064148},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13516336679458618},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12818649411201477},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11365514993667603},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11167684197425842},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10665985941886902},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D027861","descriptor_name":"Prunus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D027861","descriptor_name":"Prunus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D027861","descriptor_name":"Prunus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-9-s2-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s2-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S2-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18387211","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18387211","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:air.unimi.it:2434/1008156","is_oa":true,"landing_page_url":"https://hdl.handle.net/2434/1008156","pdf_url":null,"source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2323672","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2323672","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-s2-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s2-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S2-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131354047.pdf","grobid_xml":"https://content.openalex.org/works/W2131354047.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W64749174","https://openalex.org/W1980903541","https://openalex.org/W1985726486","https://openalex.org/W1986800180","https://openalex.org/W2027105072","https://openalex.org/W2034746416","https://openalex.org/W2101972919","https://openalex.org/W2103017472","https://openalex.org/W2108338000","https://openalex.org/W2112814753","https://openalex.org/W2117019496","https://openalex.org/W2121016876","https://openalex.org/W2123097295","https://openalex.org/W2136253961","https://openalex.org/W2143173841","https://openalex.org/W2166265186","https://openalex.org/W2169329860"],"related_works":["https://openalex.org/W2102027645","https://openalex.org/W2107785922","https://openalex.org/W2035528219","https://openalex.org/W2402478170","https://openalex.org/W2999847357","https://openalex.org/W2993777277","https://openalex.org/W2059565715","https://openalex.org/W2901823680","https://openalex.org/W2946410450","https://openalex.org/W1999129612"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,45,214,222,273],"ESTree":[2,56,97,127,251,277,323],"database":[3,82,145,232],"(db)":[4],"is":[5,89,254],"a":[6,113,153,180,280,301],"collection":[7],"of":[8,47,72,80,92,112,125,146,187,224,246,263,276,304,321,327],"Prunus":[9,12],"persica":[10],"and":[11,27,34,62,120,141,161,194,220,319,326],"dulcis":[13],"EST":[14,205],"sequences":[15,23,61,148,264],"that":[16,76,149,239,265,306],"in":[17,95,152,201,211,249,291,314],"its":[18],"current":[19],"version":[20,123,274],"encompasses":[21,129],"75,404":[22],"from":[24,40,117,173,243],"3":[25],"almond":[26],"19":[28],"peach":[29,32,36,154,284],"libraries.":[30],"Nine":[31],"genotypes":[33],"four":[35,41],"tissues":[37],"are":[38,106],"represented,":[39],"fruit":[42],"developmental":[43],"stages.":[44],"aim":[46,223],"this":[48],"work":[49],"was":[50,67,182,218,227],"to":[51,69,167,184,228,234,296,334],"implement":[52],"the":[53,70,73,81,90,96,103,110,126,144,177,191,198,212,225,231,236,244,250,292,311,315,322,328,332],"already":[54],"existing":[55],"db":[57,98,128,278],"by":[58,165,256],"adding":[59],"new":[60,130],"analysis":[63,94,245,324],"programs.":[64],"Particular":[65],"care":[66],"given":[68],"implementation":[71],"web":[74,216,316,329],"interface,":[75],"allows":[77],"querying":[78,230],"each":[79],"features.":[83,271],"RESULTS:":[84],"A":[85],"Perl":[86],"modular":[87],"pipeline":[88,104,325],"backbone":[91],"sequence":[93,174],"project.":[99],"Outputs":[100],"obtained":[101],"during":[102],"steps":[105],"automatically":[107],"arrayed":[108],"into":[109],"fields":[111],"MySQL":[114],"database.":[115,213],"Apart":[116],"standard":[118],"clustering":[119],"annotation":[121,136,175],"analyses,":[122],"VI":[124,275],"tools":[131,312],"for":[132,339],"tandem":[133],"repeat":[134],"identification,":[135],"against":[137,176],"genomic":[138],"Rosaceae":[139],"sequences,":[140],"positioning":[142],"on":[143,170,190,197,260,283],"oligomer":[147],"were":[150,163,208],"used":[151],"microarray":[155],"study.":[156],"Furthermore,":[157],"known":[158],"protein":[159],"patterns":[160],"motifs":[162],"identified":[164],"comparison":[166],"PROSITE.":[168],"Based":[169],"data":[171,207,247],"retrieved":[172],"UniProtKB":[178],"database,":[179,293],"script":[181],"prepared":[183],"track":[185],"positions":[186],"homologous":[188],"hits":[189],"GO":[192,202],"tree":[193],"build":[195],"statistics":[196],"ontologies":[199],"distribution":[200],"functional":[203],"categories.":[204],"mapping":[206],"also":[209],"integrated":[210],"PHP-based":[215],"interface":[217,330],"upgraded":[219],"extended.":[221],"authors":[226,333],"enable":[229],"according":[233],"all":[235],"biological":[237,268],"aspects":[238],"can":[240,307],"be":[241,308],"investigated":[242],"available":[248],"db.":[252],"This":[253],"achieved":[255],"allowing":[257],"multiple":[258],"searches":[259],"logical":[261],"subsets":[262],"represent":[266,300],"different":[267,340],"situations":[269],"or":[270],"CONCLUSIONS:":[272],"offers":[279],"broad":[281],"overview":[282],"gene":[285],"expression.":[286],"Sequence":[287],"analyses":[288],"results":[289],"contained":[290],"extensively":[294],"linked":[295],"external":[297],"related":[298],"resources,":[299],"large":[302],"amount":[303],"information":[305],"queried":[309],"via":[310],"offered":[313],"interface.":[317],"Flexibility":[318],"modularity":[320],"allowed":[331],"set":[335],"up":[336],"similar":[337],"structures":[338],"datasets,":[341],"with":[342],"limited":[343],"manual":[344],"intervention.":[345]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":8}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
