{"id":"https://openalex.org/W2139687548","doi":"https://doi.org/10.1186/1471-2105-9-s12-s3","title":"Filtering of false positive microRNA candidates by a clustering-based approach","display_name":"Filtering of false positive microRNA candidates by a clustering-based approach","publication_year":2008,"publication_date":"2008-12-01","ids":{"openalex":"https://openalex.org/W2139687548","doi":"https://doi.org/10.1186/1471-2105-9-s12-s3","mag":"2139687548","pmid":"https://pubmed.ncbi.nlm.nih.gov/19091026"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-s12-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s12-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S12-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S12-S3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104050586","display_name":"Wing-sze Leung","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Wing-Sze Leung","raw_affiliation_strings":["Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong. h0328078@hkusua.hku.hk","Dept. of Computer Science, The University of Hong Kong, Hong Kong,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong. h0328078@hkusua.hku.hk","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Dept. of Computer Science, The University of Hong Kong, Hong Kong,#TAB#","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106266113","display_name":"Marie C\u2010M Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I8679417","display_name":"Hong Kong Metropolitan University","ror":"https://ror.org/0349bsm71","country_code":"HK","type":"education","lineage":["https://openalex.org/I8679417"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Marie CM Lin","raw_affiliation_strings":["Department of Chemistry, Open Laboratory of Chemical Biology, The University of Hong Kong, Pokfulam Road, Hong Kong","Department of Chemistry, Open Laboratory of Chemical Biology, The University of Hong Kong, , Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Open Laboratory of Chemical Biology, The University of Hong Kong, Pokfulam Road, Hong Kong","institution_ids":["https://openalex.org/I8679417","https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Chemistry, Open Laboratory of Chemical Biology, The University of Hong Kong, , Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108756735","display_name":"David W. Cheung","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"David W Cheung","raw_affiliation_strings":["Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong","Dept. of Computer Science, The University of Hong Kong, Hong Kong,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Dept. of Computer Science, The University of Hong Kong, Hong Kong,#TAB#","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068137343","display_name":"SM Yiu","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"SM Yiu","raw_affiliation_strings":["Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong","Dept. of Computer Science, The University of Hong Kong, Hong Kong,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Dept. of Computer Science, The University of Hong Kong, Hong Kong,#TAB#","institution_ids":["https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5068137343"],"corresponding_institution_ids":["https://openalex.org/I889458895"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7019,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.75892646,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"9","issue":"S12","first_page":"S3","last_page":"S3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.004600000102072954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.002199999988079071,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7764697074890137},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7014510631561279},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6960870623588562},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6038522124290466},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6016509532928467},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.5704334378242493},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.5698388814926147},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5538842678070068},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4757121205329895},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4316263198852539},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42974719405174255},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36689960956573486},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.31675493717193604},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18392536044120789},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.17967557907104492}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7764697074890137},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7014510631561279},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6960870623588562},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6038522124290466},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6016509532928467},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.5704334378242493},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.5698388814926147},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5538842678070068},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4757121205329895},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4316263198852539},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42974719405174255},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36689960956573486},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.31675493717193604},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18392536044120789},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.17967557907104492},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-9-s12-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s12-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S12-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19091026","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19091026","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:93b608a8e17d4d9ca08023a3158f455d","is_oa":true,"landing_page_url":"https://doaj.org/article/93b608a8e17d4d9ca08023a3158f455d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss Suppl 12, p S3 (2008)","raw_type":"article"},{"id":"pmh:oai:hub.hku.hk:10722/61686","is_oa":true,"landing_page_url":"http://hdl.handle.net/10722/61686","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference_Paper"},{"id":"pmh:oai:pubmedcentral.nih.gov:2638143","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2638143","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-s12-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-s12-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-S12-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5099999904632568,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139687548.pdf","grobid_xml":"https://content.openalex.org/works/W2139687548.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1491989688","https://openalex.org/W1845151788","https://openalex.org/W1978036746","https://openalex.org/W1982752738","https://openalex.org/W2014946489","https://openalex.org/W2038766179","https://openalex.org/W2085592081","https://openalex.org/W2087462807","https://openalex.org/W2097984977","https://openalex.org/W2098044747","https://openalex.org/W2103250001","https://openalex.org/W2108266886","https://openalex.org/W2112192177","https://openalex.org/W2124268899","https://openalex.org/W2133763262","https://openalex.org/W2136439471","https://openalex.org/W2137257434","https://openalex.org/W2144362290","https://openalex.org/W2151922790","https://openalex.org/W2152736091","https://openalex.org/W2165764599","https://openalex.org/W2167557255","https://openalex.org/W2171230529","https://openalex.org/W2277161090","https://openalex.org/W2406653681"],"related_works":["https://openalex.org/W1557094818","https://openalex.org/W2183246718","https://openalex.org/W2099261052","https://openalex.org/W3209204065","https://openalex.org/W2105707930","https://openalex.org/W1979741542","https://openalex.org/W2000974906","https://openalex.org/W1974120093","https://openalex.org/W4238032041","https://openalex.org/W2410634280"],"abstract_inverted_index":{"BACKGROUND:":[0],"MicroRNAs":[1],"are":[2,49,65,75,84,116,126,160],"small":[3],"non-coding":[4],"RNA":[5],"gene":[6],"products":[7],"that":[8,38,73,125,157,274],"play":[9],"diversified":[10],"roles":[11],"from":[12,196,220,290],"species":[13],"to":[14,52,67,164,174,192,222,243,278],"species.":[15],"The":[16],"explosive":[17],"growth":[18],"of":[19,28,90,121,149,199,247,305],"microRNA":[20,91,97,105,205,250],"researches":[21],"in":[22,30,44,59,70,76,86,96,108,128,224],"recent":[23],"years":[24],"proves":[25],"the":[26,31,56,88,104,109,122,129,168,176,211,225,245,255],"importance":[27],"microRNAs":[29,39,58],"biological":[32],"system":[33],"and":[34,54,93,112,119,137,152,155,167,208,228,264,283,293],"it":[35,95,275],"is":[36,241,276],"believed":[37],"have":[40],"valuable":[41],"therapeutic":[42],"potentials":[43],"human":[45],"diseases.":[46],"Continual":[47],"efforts":[48],"therefore":[50,183],"required":[51],"locate":[53],"verify":[55],"unknown":[57],"various":[60],"genomes.":[61,114],"As":[62],"many":[63],"miRNAs":[64,124,151,159],"found":[66],"be":[68,172,301],"arranged":[69],"clusters,":[71],"meaning":[72],"they":[74],"close":[77],"proximity":[78],"with":[79,285,303],"their":[80],"neighboring":[81,147],"miRNAs,":[82,144,146],"we":[83],"interested":[85],"utilizing":[87],"concept":[89],"clustering":[92,106],"applying":[94],"computational":[98],"prediction.":[99],"RESULTS:":[100],"We":[101,133,182,272],"first":[102],"validate":[103],"phenomenon":[107],"human,":[110,226],"mouse":[111,227],"rat":[113,229],"There":[115],"45.45%,":[117],"51.86%":[118],"48.67%":[120],"total":[123],"clustered":[127,143,150,158],"three":[130],"genomes,":[131,230],"respectively.":[132],"then":[134],"conduct":[135],"sequence":[136],"secondary":[138],"structure":[139],"similarity":[140,178],"analyses":[141],"among":[142],"non-clustered":[145],"sequences":[148],"random":[153],"sequences,":[154],"find":[156],"structurally":[161],"more":[162],"similar":[163],"one":[165],"another,":[166],"RNAdistance":[169],"score":[170],"can":[171,266],"used":[173],"assess":[175],"structural":[177],"between":[179],"two":[180],"sequences.":[181],"design":[184],"a":[185,197,203,216,233,261,269],"clustering-based":[186,239],"approach":[187,240,287],"which":[188],"utilizes":[189],"this":[190],"observation":[191],"filter":[193],"false":[194],"positives":[195],"list":[198],"candidates":[200],"generated":[201],"by":[202,215,253],"selected":[204],"prediction":[206,251,295],"program,":[207],"successfully":[209],"raise":[210],"positive":[212,256],"predictive":[213,257],"value":[214,258],"considerable":[217],"amount":[218],"ranging":[219],"15.23%":[221],"23.19%":[223],"while":[231,259],"keeping":[232],"reasonably":[234],"high":[235,262],"sensitivity.":[236],"CONCLUSION:":[237],"Our":[238],"able":[242],"increase":[244],"effectiveness":[246],"currently":[248],"available":[249],"program":[252],"raising":[254],"maintaining":[260],"sensitivity,":[263],"hence":[265],"serve":[267],"as":[268],"filtering":[270],"step.":[271],"believe":[273],"worthwhile":[277],"carry":[279],"out":[280],"further":[281],"experiments":[282],"tests":[284],"our":[286],"using":[288],"data":[289],"other":[291,294],"genomes":[292],"software":[296],"tools.":[297],"Better":[298],"results":[299],"may":[300],"achieved":[302],"fine-tuning":[304],"parameters.":[306]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
