{"id":"https://openalex.org/W2073357440","doi":"https://doi.org/10.1186/1471-2105-9-96","title":"High-throughput bioinformatics with the Cyrille2 pipeline system","display_name":"High-throughput bioinformatics with the Cyrille2 pipeline system","publication_year":2008,"publication_date":"2008-02-12","ids":{"openalex":"https://openalex.org/W2073357440","doi":"https://doi.org/10.1186/1471-2105-9-96","mag":"2073357440","pmid":"https://pubmed.ncbi.nlm.nih.gov/18269742"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-96","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-96","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-96","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-96","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034468026","display_name":"Mark Fiers","orcid":"https://orcid.org/0000-0001-5694-2409"},"institutions":[{"id":"https://openalex.org/I4210109752","display_name":"Research International (United States)","ror":"https://ror.org/01ev6a639","country_code":"US","type":"company","lineage":["https://openalex.org/I4210109752"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mark WEJ Fiers","raw_affiliation_strings":["Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA Wageningen, The Netherlands. Mark.Fiers@wur.nl","Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA Wageningen, The Netherlands. Mark.Fiers@wur.nl","institution_ids":["https://openalex.org/I4210109752"]},{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110206924","display_name":"Ate van der Burgt","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118008","display_name":"Centre for BioSystems Genomics","ror":"https://ror.org/02j7y6936","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I4210118008"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ate van der Burgt","raw_affiliation_strings":["Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA, Wageningen, The Netherlands","Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA, Wageningen, The Netherlands","institution_ids":["https://openalex.org/I4210118008"]},{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019230930","display_name":"Erwin Datema","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118008","display_name":"Centre for BioSystems Genomics","ror":"https://ror.org/02j7y6936","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I4210118008"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Erwin Datema","raw_affiliation_strings":["Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA, Wageningen, The Netherlands","Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA, Wageningen, The Netherlands","institution_ids":["https://openalex.org/I4210118008"]},{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110142613","display_name":"Joost CW de Groot","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118008","display_name":"Centre for BioSystems Genomics","ror":"https://ror.org/02j7y6936","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I4210118008"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Joost CW de Groot","raw_affiliation_strings":["Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA, Wageningen, The Netherlands","Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA, Wageningen, The Netherlands","institution_ids":["https://openalex.org/I4210118008"]},{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103506790","display_name":"Roeland CHJ van Ham","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118008","display_name":"Centre for BioSystems Genomics","ror":"https://ror.org/02j7y6936","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I4210118008"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Roeland CHJ van Ham","raw_affiliation_strings":["Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA, Wageningen, The Netherlands","Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, PO Box 16, 6700AA, Wageningen, The Netherlands","institution_ids":["https://openalex.org/I4210118008"]},{"raw_affiliation_string":"Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034468026"],"corresponding_institution_ids":["https://openalex.org/I4210109752"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.2633,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.7889696,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"9","issue":"1","first_page":"96","last_page":"96"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.2087000012397766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.2087000012397766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.19679999351501465,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.17110000550746918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7900545597076416},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7445243000984192},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6427123546600342},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6254512667655945},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5997085571289062},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5863387584686279},{"id":"https://openalex.org/keywords/executor","display_name":"Executor","score":0.5070374011993408},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5064960718154907},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5005028247833252},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.44164174795150757},{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.4348892271518707},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3963332772254944},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3552526831626892},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22215184569358826}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7900545597076416},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7445243000984192},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6427123546600342},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6254512667655945},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5997085571289062},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5863387584686279},{"id":"https://openalex.org/C180591056","wikidata":"https://www.wikidata.org/wiki/Q654437","display_name":"Executor","level":2,"score":0.5070374011993408},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5064960718154907},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5005028247833252},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.44164174795150757},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.4348892271518707},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3963332772254944},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3552526831626892},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22215184569358826},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-9-96","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-96","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-96","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18269742","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18269742","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b66727d68a424802906ea978af783a84","is_oa":false,"landing_page_url":"https://doaj.org/article/b66727d68a424802906ea978af783a84","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 96 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2268656","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2268656","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/364905","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/high-throughput-bioinformatics-with-the-cyrille2-pipeline-system","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 9","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-96","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-96","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-96","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5699999928474426,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2073357440.pdf","grobid_xml":"https://content.openalex.org/works/W2073357440.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W575092491","https://openalex.org/W1782521737","https://openalex.org/W1868460409","https://openalex.org/W1996902131","https://openalex.org/W2050274079","https://openalex.org/W2055043387","https://openalex.org/W2069516109","https://openalex.org/W2092969324","https://openalex.org/W2123663722","https://openalex.org/W2124879678","https://openalex.org/W2127186883","https://openalex.org/W2128374023","https://openalex.org/W2142110984","https://openalex.org/W2145477956","https://openalex.org/W2153074919","https://openalex.org/W2155421451","https://openalex.org/W2156206665","https://openalex.org/W2164085656","https://openalex.org/W2168103533","https://openalex.org/W2168477328","https://openalex.org/W4248160505"],"related_works":["https://openalex.org/W4386072068","https://openalex.org/W4386507122","https://openalex.org/W2359178629","https://openalex.org/W2127020419","https://openalex.org/W2949851956","https://openalex.org/W3210209121","https://openalex.org/W4206629223","https://openalex.org/W1581874467","https://openalex.org/W2057304795","https://openalex.org/W3022824259"],"abstract_inverted_index":{"BACKGROUND:":[0],"Modern":[1],"omics":[2,79],"research":[3],"involves":[4],"the":[5,29,55,58,62,120,123,127,131,139,152,176],"application":[6],"of":[7,14,31,34,57,64,77,100,130,185],"high-throughput":[8,75],"technologies":[9],"that":[10,113],"generate":[11],"vast":[12],"volumes":[13],"data.":[15],"These":[16],"data":[17,59,137],"need":[18],"to":[19,48,73,118],"be":[20,146],"pre-processed,":[21],"analyzed":[22],"and":[23,38,45,61,98,133,141,159,183],"integrated":[24],"with":[25],"existing":[26],"knowledge":[27],"through":[28],"use":[30],"diverse":[32],"sets":[33],"software":[35,70],"tools,":[36],"models":[37],"databases.":[39],"The":[40,92,167],"analyses":[41],"are":[42],"often":[43],"interdependent":[44],"chained":[46],"together":[47],"form":[49],"complex":[50],"workflows":[51],"or":[52],"pipelines.":[53,190],"Given":[54],"volume":[56],"used":[60],"multitude":[63],"computational":[65],"resources":[66],"available,":[67],"specialized":[68],"pipeline":[69,88,116],"is":[71,94,170],"required":[72],"make":[74],"analysis":[76],"large-scale":[78],"datasets":[80],"feasible.":[81],"RESULTS:":[82],"We":[83],"have":[84],"developed":[85],"a":[86,106,115,163],"generic":[87],"system":[89,93,132,140,169],"called":[90],"Cyrille2.":[91],"modular":[95,173],"in":[96],"design":[97],"consists":[99],"three":[101],"functionally":[102],"distinct":[103],"parts:":[104],"1)":[105],"web":[107],"based,":[108],"graphical":[109],"user":[110],"interface":[111],"(GUI)":[112],"enables":[114,180],"operator":[117],"manage":[119],"system;":[121],"2)":[122],"Scheduler,":[124],"which":[125,134,154],"forms":[126],"functional":[128],"core":[129],"tracks":[135],"what":[136,143],"enters":[138],"determines":[142],"jobs":[144,158],"must":[145],"scheduled":[147,157],"for":[148,156],"execution,":[149],"and;":[150],"3)":[151],"Executor,":[153],"searches":[155],"executes":[160],"these":[161],"on":[162],"compute":[164],"cluster.":[165],"CONCLUSION:":[166],"Cyrille2":[168,179],"an":[171],"extensible,":[172],"system,":[174],"implementing":[175],"stated":[177],"requirements.":[178],"easy":[181],"creation":[182],"execution":[184],"high":[186],"throughput,":[187],"flexible":[188],"bioinformatics":[189]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
