{"id":"https://openalex.org/W2005058680","doi":"https://doi.org/10.1186/1471-2105-9-84","title":"OSIRISv1.2: A named entity recognition system for sequence variants of genes in biomedical literature","display_name":"OSIRISv1.2: A named entity recognition system for sequence variants of genes in biomedical literature","publication_year":2008,"publication_date":"2008-02-05","ids":{"openalex":"https://openalex.org/W2005058680","doi":"https://doi.org/10.1186/1471-2105-9-84","mag":"2005058680","pmid":"https://pubmed.ncbi.nlm.nih.gov/18251998"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-84","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-84","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-84","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-84","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028427590","display_name":"Laura I. Furlong","orcid":"https://orcid.org/0000-0002-9383-528X"},"institutions":[{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Laura I Furlong","raw_affiliation_strings":["Research Unit on Biomedical Informatics (GRIB), IMIM, UPF, PRBB, c/Dr, Aiguader 88, E-08003 Barcelona, Spain. lfurlong@imim.es","Research Unit on Biomedical Informatics (GRIB), IMIM, UPF, PRBB, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Unit on Biomedical Informatics (GRIB), IMIM, UPF, PRBB, c/Dr, Aiguader 88, E-08003 Barcelona, Spain. lfurlong@imim.es","institution_ids":["https://openalex.org/I2801864671"]},{"raw_affiliation_string":"Research Unit on Biomedical Informatics (GRIB), IMIM, UPF, PRBB, Barcelona, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017317774","display_name":"Holger Dach","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Holger Dach","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056335906","display_name":"Ferr\u00e1n Sanz","orcid":"https://orcid.org/0000-0002-7534-7661"},"institutions":[{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ferran Sanz","raw_affiliation_strings":["Research Unit on Biomedical Informatics (GRIB), IMIM, UPF, PRBB, c/Dr. Aiguader 88, E-08003, Barcelona, Spain","Research Unit on Biomedical Informatics (GRIB), IMIM, UPF, PRBB, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Unit on Biomedical Informatics (GRIB), IMIM, UPF, PRBB, c/Dr. Aiguader 88, E-08003, Barcelona, Spain","institution_ids":["https://openalex.org/I2801864671"]},{"raw_affiliation_string":"Research Unit on Biomedical Informatics (GRIB), IMIM, UPF, PRBB, Barcelona, Spain","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5028427590"],"corresponding_institution_ids":["https://openalex.org/I2801864671"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.2997,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.7833291,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9","issue":"1","first_page":"84","last_page":"84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9462000131607056,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9462000131607056,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.04520000144839287,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dbsnp","display_name":"dbSNP","score":0.8074865937232971},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6279594302177429},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45414140820503235},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.437260240316391},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4269106388092041},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.41184598207473755},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3549519181251526},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33028680086135864},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30529123544692993},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.296436607837677},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.28828588128089905},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.12137764692306519}],"concepts":[{"id":"https://openalex.org/C35794970","wikidata":"https://www.wikidata.org/wiki/Q5243761","display_name":"dbSNP","level":5,"score":0.8074865937232971},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6279594302177429},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45414140820503235},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.437260240316391},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4269106388092041},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.41184598207473755},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3549519181251526},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33028680086135864},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30529123544692993},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.296436607837677},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.28828588128089905},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.12137764692306519},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-9-84","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-84","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-84","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18251998","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18251998","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:recercat.cat:2072/213231","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/16433","pdf_url":null,"source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:c506ca2901924a4392cf1d4427366557","is_oa":false,"landing_page_url":"https://doaj.org/article/c506ca2901924a4392cf1d4427366557","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 84 (2008)","raw_type":"article"},{"id":"pmh:oai:fraunhofer.de:N-72217","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-72217.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"Journal Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/215598","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/215598","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2277400","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2277400","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-84","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-84","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-84","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6899999976158142,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G8501613266","display_name":null,"funder_award_id":"027703","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2005058680.pdf","grobid_xml":"https://content.openalex.org/works/W2005058680.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1553529581","https://openalex.org/W1592053870","https://openalex.org/W1965605773","https://openalex.org/W1966174477","https://openalex.org/W1974122593","https://openalex.org/W1974999557","https://openalex.org/W1994306321","https://openalex.org/W2034137005","https://openalex.org/W2040734632","https://openalex.org/W2044602212","https://openalex.org/W2050006154","https://openalex.org/W2050483556","https://openalex.org/W2057045896","https://openalex.org/W2059044388","https://openalex.org/W2061327015","https://openalex.org/W2080001621","https://openalex.org/W2089287929","https://openalex.org/W2103397879","https://openalex.org/W2116159459","https://openalex.org/W2117243442","https://openalex.org/W2122305935","https://openalex.org/W2122732537","https://openalex.org/W2124905540","https://openalex.org/W2126276057","https://openalex.org/W2128033981","https://openalex.org/W2135912801","https://openalex.org/W2141869602","https://openalex.org/W2143489847","https://openalex.org/W2144001613","https://openalex.org/W2151296343","https://openalex.org/W2151698208","https://openalex.org/W2162629891","https://openalex.org/W2163107094","https://openalex.org/W2165329455","https://openalex.org/W2169918010","https://openalex.org/W2257876130","https://openalex.org/W2586281911","https://openalex.org/W4233553136","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W92398317","https://openalex.org/W1571439191","https://openalex.org/W4290715869","https://openalex.org/W2100428244","https://openalex.org/W2085065009","https://openalex.org/W2150709695","https://openalex.org/W2370503562","https://openalex.org/W2122732537","https://openalex.org/W4386853476","https://openalex.org/W4211043580"],"abstract_inverted_index":{"BACKGROUND:":[0],"Single":[1],"Nucleotide":[2],"Polymorphisms,":[3],"among":[4],"other":[5],"type":[6],"of":[7,38,49,56,67,73,87,89,92,107,115,120,128,132,148,152,183,197,215,222,233,279,284,299],"sequence":[8,19,166,272],"variants,":[9],"constitute":[10],"key":[11],"elements":[12],"in":[13,44,94,186,207,286],"genetic":[14,22],"epidemiology":[15],"and":[16,35,53,70,143,156,189,212,241,262,274],"pharmacogenomics.":[17],"While":[18],"data":[20,162],"about":[21,32,117],"variation":[23,184,280],"is":[24,144,173,244,264],"found":[25,43],"at":[26,112],"databases":[27,69],"such":[28,302],"as":[29,303],"dbSNP,":[30],"clues":[31],"the":[33,39,50,54,57,64,71,85,105,113,126,153,181,187,220,223,230,237,276],"functional":[34,277],"phenotypic":[36],"consequences":[37],"variations":[40,273],"are":[41,61,97],"generally":[42],"biomedical":[45,79,95,300],"literature.":[46],"The":[47,168,195,282],"identification":[48,86,182],"relevant":[51],"documents":[52],"extraction":[55],"information":[58],"from":[59],"them":[60],"hampered":[62],"by":[63],"large":[65],"size":[66],"literature":[68,116,227,253],"lack":[72],"widely":[74],"accepted":[75],"standard":[76],"notation":[77],"for":[78,84,180,225,229,266],"entities.":[80],"Thus,":[81],"automatic":[82],"systems":[83],"citations":[88,228],"allelic":[90,118,231],"variants":[91,119,232],"genes":[93,121,234],"texts":[96,188],"required.":[98],"RESULTS:":[99],"Our":[100],"group":[101],"has":[102],"previously":[103],"reported":[104],"development":[106,127],"OSIRIS,":[108],"a":[109,129,138,149,158,176,202,294],"system":[110,224],"aimed":[111],"retrieval":[114],"http://ibi.imim.es/osirisform.html.":[122],"Here":[123],"we":[124],"describe":[125],"new":[130,139,169],"version":[131],"OSIRIS":[133],"(OSIRISv1.2,":[134],"http://ibi.imim.es/OSIRISv1.2.html)":[135],"which":[136],"incorporates":[137],"entity":[140,170],"recognition":[141,171],"module":[142,172],"built":[145],"on":[146,163,175,201,270],"top":[147],"local":[150],"mirror":[151],"MEDLINE":[154],"collection":[155],"HgenetInfoDB:":[157],"database":[159,257],"that":[160,305],"collects":[161],"human":[164],"gene":[165,271],"variations.":[167],"based":[174],"pattern-based":[177],"search":[178],"algorithm":[179],"terms":[185],"their":[190],"mapping":[191],"to":[192,236,251,255,296],"dbSNP":[193,256],"identifiers.":[194],"performance":[196],"OSIRISv1.2":[198,247,285],"was":[199],"evaluated":[200],"manually":[203],"annotated":[204],"corpus,":[205],"resulting":[206],"99%":[208],"precision,":[209],"82%":[210],"recall,":[211],"an":[213,218],"F-score":[214],"0.89.":[216],"As":[217],"example,":[219],"application":[221,283],"collecting":[226,267],"related":[235],"diseases":[238],"intracranial":[239],"aneurysm":[240],"breast":[242],"cancer":[243],"presented.":[245],"CONCLUSION:":[246],"can":[248],"be":[249],"used":[250],"link":[252],"references":[254],"entries":[258],"with":[259,288,308],"high":[260],"accuracy,":[261],"therefore":[263],"suitable":[265],"current":[268],"knowledge":[269],"supporting":[275],"annotation":[278],"databases.":[281],"combination":[287],"controlled":[289],"vocabularies":[290],"like":[291],"MeSH":[292],"provides":[293],"way":[295],"identify":[297],"associations":[298],"interest,":[301],"those":[304],"relate":[306],"SNPs":[307],"diseases.":[309]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
