{"id":"https://openalex.org/W2146678880","doi":"https://doi.org/10.1186/1471-2105-9-51","title":"The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction","display_name":"The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction","publication_year":2008,"publication_date":"2008-01-25","ids":{"openalex":"https://openalex.org/W2146678880","doi":"https://doi.org/10.1186/1471-2105-9-51","mag":"2146678880","pmid":"https://pubmed.ncbi.nlm.nih.gov/18221517"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-51","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-51","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-51","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-51","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016442507","display_name":"Jonathan Manning","orcid":"https://orcid.org/0000-0002-3483-8456"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jonathan R Manning","raw_affiliation_strings":["School of Life Sciences Research, University of Dundee, UK. jrm@compbio.dundee.ac.uk","School of Life Sciences Research, University of Dundee, , UK"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences Research, University of Dundee, UK. jrm@compbio.dundee.ac.uk","institution_ids":["https://openalex.org/I177639307"]},{"raw_affiliation_string":"School of Life Sciences Research, University of Dundee, , UK","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075111618","display_name":"Emily Jefferson","orcid":"https://orcid.org/0000-0003-2992-7582"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Emily R Jefferson","raw_affiliation_strings":["School of Life Sciences Research, University of Dundee, UK","School of Life Sciences Research, University of Dundee, , UK"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences Research, University of Dundee, UK","institution_ids":["https://openalex.org/I177639307"]},{"raw_affiliation_string":"School of Life Sciences Research, University of Dundee, , UK","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082043302","display_name":"Geoffrey J. Barton","orcid":"https://orcid.org/0000-0002-9014-5355"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Geoffrey J Barton","raw_affiliation_strings":["School of Life Sciences Research, University of Dundee, UK","School of Life Sciences Research, University of Dundee, , UK"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences Research, University of Dundee, UK","institution_ids":["https://openalex.org/I177639307"]},{"raw_affiliation_string":"School of Life Sciences Research, University of Dundee, , UK","institution_ids":["https://openalex.org/I177639307"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016442507"],"corresponding_institution_ids":["https://openalex.org/I177639307"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.93,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.85808337,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9","issue":"1","first_page":"51","last_page":"51"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7126694321632385},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5429851412773132},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4993596076965332},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.4838337004184723},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.46796804666519165},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4536430835723877},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44826823472976685},{"id":"https://openalex.org/keywords/principle-of-maximum-entropy","display_name":"Principle of maximum entropy","score":0.4455837309360504},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.441652774810791},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43945908546447754},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4320718050003052},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.42600512504577637},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.42254793643951416},{"id":"https://openalex.org/keywords/protein-family","display_name":"Protein family","score":0.4145796298980713},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4009479582309723},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.38666462898254395},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.384174108505249},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38348594307899475},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3754103481769562},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.35311925411224365},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30053627490997314},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.2132878601551056},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2080886960029602},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.14737683534622192},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09234601259231567}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7126694321632385},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5429851412773132},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4993596076965332},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.4838337004184723},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.46796804666519165},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4536430835723877},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44826823472976685},{"id":"https://openalex.org/C9679016","wikidata":"https://www.wikidata.org/wiki/Q1417473","display_name":"Principle of maximum entropy","level":2,"score":0.4455837309360504},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.441652774810791},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43945908546447754},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4320718050003052},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.42600512504577637},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.42254793643951416},{"id":"https://openalex.org/C171897839","wikidata":"https://www.wikidata.org/wiki/Q417841","display_name":"Protein family","level":3,"score":0.4145796298980713},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4009479582309723},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.38666462898254395},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.384174108505249},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38348594307899475},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3754103481769562},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.35311925411224365},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30053627490997314},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.2132878601551056},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2080886960029602},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.14737683534622192},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09234601259231567},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-9-51","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-51","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-51","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18221517","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18221517","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire_cris_publications/91de42f9-5fca-4079-bedf-c6aa479c9c16","is_oa":false,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/91de42f9-5fca-4079-bedf-c6aa479c9c16","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Manning, J R, Jefferson, E R & Barton, G J 2008, 'The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction', BMC Bioinformatics, vol. 9, 51, pp. -. https://doi.org/10.1186/1471-2105-9-51","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:c5ed04c4546042498b28350c0e6349e7","is_oa":true,"landing_page_url":"https://doaj.org/article/c5ed04c4546042498b28350c0e6349e7","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 51 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2267696","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2267696","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-51","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-51","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-51","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7099999785423279,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146678880.pdf","grobid_xml":"https://content.openalex.org/works/W2146678880.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W18486434","https://openalex.org/W1518862846","https://openalex.org/W1545654052","https://openalex.org/W1633894399","https://openalex.org/W1965582988","https://openalex.org/W1966041739","https://openalex.org/W1967293793","https://openalex.org/W1967408543","https://openalex.org/W1972691129","https://openalex.org/W1977845138","https://openalex.org/W1987328021","https://openalex.org/W1995924392","https://openalex.org/W2005120335","https://openalex.org/W2054453390","https://openalex.org/W2056449835","https://openalex.org/W2065348120","https://openalex.org/W2069663555","https://openalex.org/W2074444584","https://openalex.org/W2084413241","https://openalex.org/W2085145974","https://openalex.org/W2085277871","https://openalex.org/W2097382368","https://openalex.org/W2099254366","https://openalex.org/W2101841137","https://openalex.org/W2102150307","https://openalex.org/W2103017472","https://openalex.org/W2108067237","https://openalex.org/W2111909811","https://openalex.org/W2116099439","https://openalex.org/W2119498937","https://openalex.org/W2127552260","https://openalex.org/W2128478556","https://openalex.org/W2129448726","https://openalex.org/W2129748900","https://openalex.org/W2132109794","https://openalex.org/W2136280642","https://openalex.org/W2137298705","https://openalex.org/W2137991504","https://openalex.org/W2142757818","https://openalex.org/W2143004134","https://openalex.org/W2148219066","https://openalex.org/W2152568394","https://openalex.org/W2155469822","https://openalex.org/W2156728093","https://openalex.org/W2157001909","https://openalex.org/W2157825442","https://openalex.org/W2163352757","https://openalex.org/W2167318540","https://openalex.org/W2213701196","https://openalex.org/W3199943451","https://openalex.org/W4231338500","https://openalex.org/W4256395558"],"related_works":["https://openalex.org/W2602307348","https://openalex.org/W2094822546","https://openalex.org/W1969080446","https://openalex.org/W2593264178","https://openalex.org/W4388708026","https://openalex.org/W3108941781","https://openalex.org/W2470147982","https://openalex.org/W2141925828","https://openalex.org/W2108768153","https://openalex.org/W1914481269"],"abstract_inverted_index":{"Williamson":[0,21],"property":[1],"entropy":[2],"is":[3,37],"the":[4,5,41,74,78],"best":[6,32],"performing":[7],"of":[8,17,34,43,52,68,76,81],"14":[9],"conservation":[10],"measures":[11],"examined.":[12],"The":[13,31],"difference":[14],"in":[15,22,50],"performance":[16,63],"SMERFS":[18,62],"relative":[19],"to":[20],"manually":[23],"defined":[24],"complexes":[25],"was":[26,64],"dependent":[27,39],"on":[28,40],"complex":[29],"type.":[30],"choice":[33],"analysis":[35],"method":[36],"therefore":[38],"system":[42],"interest.":[44],"Additional":[45],"computation":[46],"employed":[47],"by":[48,66],"Miner":[49],"calculation":[51],"phylogenetic":[53],"trees":[54],"did":[55],"not":[56],"produce":[57],"improved":[58,65],"results":[59],"over":[60,70],"SMERFS.":[61],"use":[67],"windows":[69],"alignment":[71],"columns,":[72],"illustrating":[73],"necessity":[75],"considering":[77],"local":[79],"environment":[80],"positions":[82],"when":[83],"assessing":[84],"their":[85],"functional":[86],"significance.":[87]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
