{"id":"https://openalex.org/W2106871756","doi":"https://doi.org/10.1186/1471-2105-9-448","title":"Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfaces","display_name":"Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfaces","publication_year":2008,"publication_date":"2008-10-21","ids":{"openalex":"https://openalex.org/W2106871756","doi":"https://doi.org/10.1186/1471-2105-9-448","mag":"2106871756","pmid":"https://pubmed.ncbi.nlm.nih.gov/18939984"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-448","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-448","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-448","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-448","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002870745","display_name":"Salim Bougouffa","orcid":"https://orcid.org/0000-0001-9218-6452"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Salim Bougouffa","raw_affiliation_strings":["Faculty of Life Sciences, the Michael Smith Building, University of Manchester, Manchester, UK. salim.bougouffa@postgrad.manchester.ac.uk","Faculty of Life Sciences; The Michael Smith Building; University of Manchester; Manchester UK"],"affiliations":[{"raw_affiliation_string":"Faculty of Life Sciences, the Michael Smith Building, University of Manchester, Manchester, UK. salim.bougouffa@postgrad.manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Faculty of Life Sciences; The Michael Smith Building; University of Manchester; Manchester UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012922833","display_name":"Jim Warwicker","orcid":"https://orcid.org/0000-0002-1302-0815"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jim Warwicker","raw_affiliation_strings":["Faculty of Life Sciences, the Michael Smith Building, University of Manchester, Oxford Road, Manchester, M13 9PT, UK","Faculty of Life Sciences; The Michael Smith Building; University of Manchester; Manchester UK"],"affiliations":[{"raw_affiliation_string":"Faculty of Life Sciences, the Michael Smith Building, University of Manchester, Oxford Road, Manchester, M13 9PT, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Faculty of Life Sciences; The Michael Smith Building; University of Manchester; Manchester UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002870745"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2757,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.6083233,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"9","issue":"1","first_page":"448","last_page":"448"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.6778627038002014},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.6512078046798706},{"id":"https://openalex.org/keywords/polar","display_name":"Polar","score":0.599369466304779},{"id":"https://openalex.org/keywords/solvent","display_name":"Solvent","score":0.5891456007957458},{"id":"https://openalex.org/keywords/solvation","display_name":"Solvation","score":0.58424311876297},{"id":"https://openalex.org/keywords/volume","display_name":"Volume (thermodynamics)","score":0.564272940158844},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5463169813156128},{"id":"https://openalex.org/keywords/wild-type","display_name":"Wild type","score":0.47975170612335205},{"id":"https://openalex.org/keywords/solvent-models","display_name":"Solvent models","score":0.46023795008659363},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.43837684392929077},{"id":"https://openalex.org/keywords/conformational-isomerism","display_name":"Conformational isomerism","score":0.42241668701171875},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.42198628187179565},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.4114445447921753},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.40103888511657715},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.3818451762199402},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3731793165206909},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.21720242500305176},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.21389099955558777},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.1814015507698059},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11147043108940125},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.1063280999660492},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09495088458061218}],"concepts":[{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.6778627038002014},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.6512078046798706},{"id":"https://openalex.org/C29705727","wikidata":"https://www.wikidata.org/wiki/Q294562","display_name":"Polar","level":2,"score":0.599369466304779},{"id":"https://openalex.org/C2780471494","wikidata":"https://www.wikidata.org/wiki/Q146505","display_name":"Solvent","level":2,"score":0.5891456007957458},{"id":"https://openalex.org/C148093993","wikidata":"https://www.wikidata.org/wiki/Q739398","display_name":"Solvation","level":3,"score":0.58424311876297},{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.564272940158844},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5463169813156128},{"id":"https://openalex.org/C207583985","wikidata":"https://www.wikidata.org/wiki/Q128723","display_name":"Wild type","level":4,"score":0.47975170612335205},{"id":"https://openalex.org/C2779455329","wikidata":"https://www.wikidata.org/wiki/Q22908915","display_name":"Solvent models","level":4,"score":0.46023795008659363},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.43837684392929077},{"id":"https://openalex.org/C18705241","wikidata":"https://www.wikidata.org/wiki/Q1128023","display_name":"Conformational isomerism","level":3,"score":0.42241668701171875},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.42198628187179565},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4114445447921753},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.40103888511657715},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.3818451762199402},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3731793165206909},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.21720242500305176},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.21389099955558777},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.1814015507698059},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11147043108940125},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.1063280999660492},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09495088458061218},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050505","descriptor_name":"Mutant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050505","descriptor_name":"Mutant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050505","descriptor_name":"Mutant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050505","descriptor_name":"Mutant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D050505","descriptor_name":"Mutant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D050505","descriptor_name":"Mutant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-9-448","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-448","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-448","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18939984","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18939984","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/625cd8f2-e164-4a3f-8bb4-116055e9ea52","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/625cd8f2-e164-4a3f-8bb4-116055e9ea52","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bougouffa, S & Warwicker, J 2008, 'Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfaces', BMC Bioinformatics, vol. 9, 448. https://doi.org/10.1186/1471-2105-9-448","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:445a8395846b46c386507718f2d72dda","is_oa":true,"landing_page_url":"https://doaj.org/article/445a8395846b46c386507718f2d72dda","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 448 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2596146","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2596146","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/625cd8f2-e164-4a3f-8bb4-116055e9ea52","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/volumebased-solvation-models-outperform-areabased-models-in-combined-studies-of-wildtype-and-mutated-proteinprotein-interfaces(625cd8f2-e164-4a3f-8bb4-116055e9ea52).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bougouffa, S & Warwicker, J 2008, 'Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfaces', BMC Bioinformatics, vol. 9, 448. https://doi.org/10.1186/1471-2105-9-448","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-448","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-448","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-448","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106871756.pdf","grobid_xml":"https://content.openalex.org/works/W2106871756.grobid-xml"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W253853566","https://openalex.org/W1489338305","https://openalex.org/W1772240178","https://openalex.org/W1963982969","https://openalex.org/W1964200784","https://openalex.org/W1971142781","https://openalex.org/W1974156712","https://openalex.org/W1977640049","https://openalex.org/W1979486475","https://openalex.org/W1984223438","https://openalex.org/W1990159344","https://openalex.org/W1996559970","https://openalex.org/W1997380288","https://openalex.org/W2008852962","https://openalex.org/W2010737876","https://openalex.org/W2011807123","https://openalex.org/W2012667720","https://openalex.org/W2015403140","https://openalex.org/W2015642465","https://openalex.org/W2017215117","https://openalex.org/W2019213007","https://openalex.org/W2028525235","https://openalex.org/W2029974030","https://openalex.org/W2032897685","https://openalex.org/W2035293726","https://openalex.org/W2040816544","https://openalex.org/W2041487385","https://openalex.org/W2047840793","https://openalex.org/W2054123026","https://openalex.org/W2055490020","https://openalex.org/W2058369753","https://openalex.org/W2063609829","https://openalex.org/W2066244933","https://openalex.org/W2068115563","https://openalex.org/W2071826159","https://openalex.org/W2074104861","https://openalex.org/W2075500145","https://openalex.org/W2075662564","https://openalex.org/W2076261991","https://openalex.org/W2076753628","https://openalex.org/W2078688023","https://openalex.org/W2089088986","https://openalex.org/W2092387745","https://openalex.org/W2093332609","https://openalex.org/W2094825303","https://openalex.org/W2099367920","https://openalex.org/W2107399000","https://openalex.org/W2112788337","https://openalex.org/W2116435022","https://openalex.org/W2128327963","https://openalex.org/W2130479394","https://openalex.org/W2130670576","https://openalex.org/W2134731229","https://openalex.org/W2139939149","https://openalex.org/W2150192011","https://openalex.org/W2153320040","https://openalex.org/W2153731681","https://openalex.org/W2154863979","https://openalex.org/W2157281740","https://openalex.org/W2157735020","https://openalex.org/W2157892451","https://openalex.org/W2164683820","https://openalex.org/W2165948287","https://openalex.org/W2169408159","https://openalex.org/W2170342322","https://openalex.org/W2611076569","https://openalex.org/W2916078022"],"related_works":["https://openalex.org/W2019750909","https://openalex.org/W1974433778","https://openalex.org/W4281748313","https://openalex.org/W2610593458","https://openalex.org/W4296251651","https://openalex.org/W2902391471","https://openalex.org/W2120347752","https://openalex.org/W4323037679","https://openalex.org/W2062824236","https://openalex.org/W2098607050"],"abstract_inverted_index":{"We":[0,40],"conclude":[1],"that":[2],"solvent":[3,24],"accessible":[4],"area,":[5,49],"based":[6],"on":[7],"modelled":[8,74],"mutant":[9],"structures,":[10],"is":[11,27],"a":[12,36],"poor":[13],"correlate":[14],"for":[15,29,70],"DeltaDeltaG":[16,32],"upon":[17],"mutation.":[18],"A":[19],"simple":[20,67],"volume-based,":[21],"rather":[22],"than":[23],"accessibility-based,":[25],"model":[26],"constructed":[28],"DeltaG":[30],"and":[31],"systems.":[33],"This":[34,60],"shows":[35],"more":[37],"consistent":[38],"behaviour.":[39],"discuss":[41],"the":[42,53],"efficacy":[43],"of":[44,56],"volume,":[45],"as":[46],"opposed":[47],"to":[48,51,65],"approaches":[50],"describe":[52],"energetic":[54],"consequences":[55],"mutations":[57],"at":[58],"interfaces.":[59,75],"knowledge":[61],"can":[62],"be":[63],"used":[64],"develop":[66],"computational":[68],"screens":[69],"binding":[71],"in":[72],"comparative":[73]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
