{"id":"https://openalex.org/W2007737173","doi":"https://doi.org/10.1186/1471-2105-9-41","title":"Predicting the Interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service","display_name":"Predicting the Interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service","publication_year":2008,"publication_date":"2008-01-24","ids":{"openalex":"https://openalex.org/W2007737173","doi":"https://doi.org/10.1186/1471-2105-9-41","mag":"2007737173","pmid":"https://pubmed.ncbi.nlm.nih.gov/18215330"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-41","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-41","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-41","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-41","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111784522","display_name":"Jeong-Gu Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I2800443534","display_name":"Rural Development Administration","ror":"https://ror.org/03xs9yg50","country_code":"KR","type":"government","lineage":["https://openalex.org/I2800443534","https://openalex.org/I2801339556","https://openalex.org/I4210090853"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jeong-Gu Kim","raw_affiliation_strings":["Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon 441-707, Korea. jkim5aug@yahoo.com","Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon 441-707, Korea. jkim5aug@yahoo.com","institution_ids":["https://openalex.org/I2800443534"]},{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea","institution_ids":["https://openalex.org/I2800443534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004967349","display_name":"Daeui Park","orcid":"https://orcid.org/0000-0002-9452-5849"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Daeui Park","raw_affiliation_strings":["Korean BioInformation Center (KOBIC), KRIBB, Daejeon, 305-806, Korea","Korean BioInformation Center (KOBIC), KRIBB, Daejeon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korean BioInformation Center (KOBIC), KRIBB, Daejeon, 305-806, Korea","institution_ids":["https://openalex.org/I73616290"]},{"raw_affiliation_string":"Korean BioInformation Center (KOBIC), KRIBB, Daejeon, Korea","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102819014","display_name":"Byoung-Chul Kim","orcid":"https://orcid.org/0000-0002-4571-1151"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Byoung-Chul Kim","raw_affiliation_strings":["Korean BioInformation Center (KOBIC), KRIBB, Daejeon, 305-806, Korea","Korean BioInformation Center (KOBIC), KRIBB, Daejeon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korean BioInformation Center (KOBIC), KRIBB, Daejeon, 305-806, Korea","institution_ids":["https://openalex.org/I73616290"]},{"raw_affiliation_string":"Korean BioInformation Center (KOBIC), KRIBB, Daejeon, Korea","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084075698","display_name":"Seong-Woong Cho","orcid":null},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seong-Woong Cho","raw_affiliation_strings":["Korean BioInformation Center (KOBIC), KRIBB, Daejeon, 305-806, Korea","Korean BioInformation Center (KOBIC), KRIBB, Daejeon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korean BioInformation Center (KOBIC), KRIBB, Daejeon, 305-806, Korea","institution_ids":["https://openalex.org/I73616290"]},{"raw_affiliation_string":"Korean BioInformation Center (KOBIC), KRIBB, Daejeon, Korea","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110008392","display_name":"Yeong Tae Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I2800443534","display_name":"Rural Development Administration","ror":"https://ror.org/03xs9yg50","country_code":"KR","type":"government","lineage":["https://openalex.org/I2800443534","https://openalex.org/I2801339556","https://openalex.org/I4210090853"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yeong Tae Kim","raw_affiliation_strings":["Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, 441-707, Korea","Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, 441-707, Korea","institution_ids":["https://openalex.org/I2800443534"]},{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea","institution_ids":["https://openalex.org/I2800443534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110008393","display_name":"Young-Jin Park","orcid":null},"institutions":[{"id":"https://openalex.org/I2800443534","display_name":"Rural Development Administration","ror":"https://ror.org/03xs9yg50","country_code":"KR","type":"government","lineage":["https://openalex.org/I2800443534","https://openalex.org/I2801339556","https://openalex.org/I4210090853"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Young-Jin Park","raw_affiliation_strings":["Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, 441-707, Korea","Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, 441-707, Korea","institution_ids":["https://openalex.org/I2800443534"]},{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea","institution_ids":["https://openalex.org/I2800443534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110310045","display_name":"Hee Jung Cho","orcid":"https://orcid.org/0009-0004-1817-1657"},"institutions":[{"id":"https://openalex.org/I2800443534","display_name":"Rural Development Administration","ror":"https://ror.org/03xs9yg50","country_code":"KR","type":"government","lineage":["https://openalex.org/I2800443534","https://openalex.org/I2801339556","https://openalex.org/I4210090853"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hee Jung Cho","raw_affiliation_strings":["Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, 441-707, Korea","Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, 441-707, Korea","institution_ids":["https://openalex.org/I2800443534"]},{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea","institution_ids":["https://openalex.org/I2800443534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029261428","display_name":"Hyunseok Park","orcid":null},"institutions":[{"id":"https://openalex.org/I138925566","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05","country_code":"KR","type":"education","lineage":["https://openalex.org/I138925566"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyunseok Park","raw_affiliation_strings":["Department of Computer Science and Engineering, Ewha Womans University, Seoul, 120-750, Korea","Dept of Computer Science and Engineering, Ewha Womans University, Seoul, Korea#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Ewha Womans University, Seoul, 120-750, Korea","institution_ids":["https://openalex.org/I138925566"]},{"raw_affiliation_string":"Dept of Computer Science and Engineering, Ewha Womans University, Seoul, Korea#TAB#","institution_ids":["https://openalex.org/I138925566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066803347","display_name":"Ki\u2010Bong Kim","orcid":"https://orcid.org/0000-0002-4918-7262"},"institutions":[{"id":"https://openalex.org/I157264075","display_name":"Sangmyung University","ror":"https://ror.org/01x4whx42","country_code":"KR","type":"education","lineage":["https://openalex.org/I157264075"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Ki-Bong Kim","raw_affiliation_strings":["Department of Biotechnology and Informatics, Sang Myung University, Cheonan, 330-720, Korea","Department of Biotechnology and Informatics, Sang Myung University, Cheonan, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Informatics, Sang Myung University, Cheonan, 330-720, Korea","institution_ids":["https://openalex.org/I157264075"]},{"raw_affiliation_string":"Department of Biotechnology and Informatics, Sang Myung University, Cheonan, Korea","institution_ids":["https://openalex.org/I157264075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110187276","display_name":"Kyong-Oh Yoon","orcid":null},"institutions":[{"id":"https://openalex.org/I4210129256","display_name":"Macrogen (South Korea)","ror":"https://ror.org/03qan5r71","country_code":"KR","type":"company","lineage":["https://openalex.org/I4210129256"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kyong-Oh Yoon","raw_affiliation_strings":["Macrogen Inc., Seoul, 153-781, Korea","Macrogen Inc., Seoul, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Macrogen Inc., Seoul, 153-781, Korea","institution_ids":["https://openalex.org/I4210129256"]},{"raw_affiliation_string":"Macrogen Inc., Seoul, Korea","institution_ids":["https://openalex.org/I4210129256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029441231","display_name":"Soo-Jun Park","orcid":null},"institutions":[{"id":"https://openalex.org/I142401562","display_name":"Electronics and Telecommunications Research Institute","ror":"https://ror.org/03ysstz10","country_code":"KR","type":"facility","lineage":["https://openalex.org/I142401562","https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Soo-Jun Park","raw_affiliation_strings":["Bioinformatics Team, Electronics and Telecommunications Research Institute (ETRI), Daejeon, 305-350, Korea","Bioinformatics Team, Electronics and Telecommunications Research Institute (ETRI), Daejeon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Team, Electronics and Telecommunications Research Institute (ETRI), Daejeon, 305-350, Korea","institution_ids":["https://openalex.org/I142401562"]},{"raw_affiliation_string":"Bioinformatics Team, Electronics and Telecommunications Research Institute (ETRI), Daejeon, Korea","institution_ids":["https://openalex.org/I142401562"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077723301","display_name":"Byoung\u2010Moo Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I2800443534","display_name":"Rural Development Administration","ror":"https://ror.org/03xs9yg50","country_code":"KR","type":"government","lineage":["https://openalex.org/I2800443534","https://openalex.org/I2801339556","https://openalex.org/I4210090853"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Byoung-Moo Lee","raw_affiliation_strings":["Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, 441-707, Korea","Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, 441-707, Korea","institution_ids":["https://openalex.org/I2800443534"]},{"raw_affiliation_string":"Microbial Genetics Division, National Institute of Agricultural Biotechnology (NIAB), Rural Development Administration (RDA), Suwon, Korea","institution_ids":["https://openalex.org/I2800443534"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5106524647","display_name":"Jong Bhak","orcid":null},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jong Bhak","raw_affiliation_strings":["Korean BioInformation Center (KOBIC), KRIBB, Daejeon, 305-806, Korea","Korean BioInformation Center (KOBIC), KRIBB, Daejeon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korean BioInformation Center (KOBIC), KRIBB, Daejeon, 305-806, Korea","institution_ids":["https://openalex.org/I73616290"]},{"raw_affiliation_string":"Korean BioInformation Center (KOBIC), KRIBB, Daejeon, Korea","institution_ids":["https://openalex.org/I73616290"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5111784522"],"corresponding_institution_ids":["https://openalex.org/I2800443534"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.1057,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.864623,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9","issue":"1","first_page":"41","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6739000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6739000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.06859999895095825,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.03020000085234642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.981956958770752},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7607257962226868},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6629714369773865},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.6625267863273621},{"id":"https://openalex.org/keywords/xanthomonas-oryzae","display_name":"Xanthomonas oryzae","score":0.6197119951248169},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6129325032234192},{"id":"https://openalex.org/keywords/effector","display_name":"Effector","score":0.6066349744796753},{"id":"https://openalex.org/keywords/pathovar","display_name":"Pathovar","score":0.5193825364112854},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.502748966217041},{"id":"https://openalex.org/keywords/xanthomonas-oryzae-pv.-oryzae","display_name":"Xanthomonas oryzae pv. oryzae","score":0.48235219717025757},{"id":"https://openalex.org/keywords/architecture-domain","display_name":"Architecture domain","score":0.4253208339214325},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4220360815525055},{"id":"https://openalex.org/keywords/hypothetical-protein","display_name":"Hypothetical protein","score":0.4121747314929962},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.3087303638458252},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3073982298374176},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.2642448842525482},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.2073054313659668},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2043299376964569},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.10341769456863403}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.981956958770752},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7607257962226868},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6629714369773865},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.6625267863273621},{"id":"https://openalex.org/C2776964914","wikidata":"https://www.wikidata.org/wiki/Q8043056","display_name":"Xanthomonas oryzae","level":3,"score":0.6197119951248169},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6129325032234192},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.6066349744796753},{"id":"https://openalex.org/C2778966571","wikidata":"https://www.wikidata.org/wiki/Q1972414","display_name":"Pathovar","level":5,"score":0.5193825364112854},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.502748966217041},{"id":"https://openalex.org/C2780785505","wikidata":"https://www.wikidata.org/wiki/Q16993531","display_name":"Xanthomonas oryzae pv. oryzae","level":4,"score":0.48235219717025757},{"id":"https://openalex.org/C194167682","wikidata":"https://www.wikidata.org/wiki/Q4787088","display_name":"Architecture domain","level":5,"score":0.4253208339214325},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4220360815525055},{"id":"https://openalex.org/C129075420","wikidata":"https://www.wikidata.org/wiki/Q10855009","display_name":"Hypothetical protein","level":3,"score":0.4121747314929962},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.3087303638458252},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3073982298374176},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.2642448842525482},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.2073054313659668},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2043299376964569},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10341769456863403},{"id":"https://openalex.org/C2776738503","wikidata":"https://www.wikidata.org/wiki/Q138058","display_name":"Pseudomonadaceae","level":4,"score":0.0},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.0},{"id":"https://openalex.org/C2781463711","wikidata":"https://www.wikidata.org/wiki/Q131143","display_name":"Pseudomonas","level":3,"score":0.0},{"id":"https://openalex.org/C27591593","wikidata":"https://www.wikidata.org/wiki/Q4380897","display_name":"Enterprise architecture framework","level":4,"score":0.0},{"id":"https://openalex.org/C35869016","wikidata":"https://www.wikidata.org/wiki/Q846636","display_name":"Software architecture","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-9-41","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-41","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-41","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18215330","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18215330","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:5c5bcbeaa03343f19810425450773c31","is_oa":false,"landing_page_url":"https://doaj.org/article/5c5bcbeaa03343f19810425450773c31","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 41 (2008)","raw_type":"article"},{"id":"pmh:oai:http://repository.kribb.re.kr:8080/:201005/8336","is_oa":false,"landing_page_url":"http://doi.org/10.1186/1471-2105-9-41","pdf_url":null,"source":{"id":"https://openalex.org/S4406922719","display_name":"KRIBB Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"/dspace/upload/original/7504.pdf","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2246157","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2246157","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:scholarworks.unist.ac.kr:201301/13239","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/9/41","pdf_url":null,"source":{"id":"https://openalex.org/S4306401118","display_name":"Scholarworks@UNIST (Ulsan National Institute of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I48566637","host_organization_name":"Ulsan National Institute of Science and Technology","host_organization_lineage":["https://openalex.org/I48566637"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"ARTICLE"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-41","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-41","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-41","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322035","display_name":"Rural Development Administration","ror":"https://ror.org/03xs9yg50"},{"id":"https://openalex.org/F4320322110","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07"},{"id":"https://openalex.org/F4320322348","display_name":"Korea Science and Engineering Foundation","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2007737173.pdf","grobid_xml":"https://content.openalex.org/works/W2007737173.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1520055248","https://openalex.org/W1973685055","https://openalex.org/W1982428412","https://openalex.org/W2028254759","https://openalex.org/W2065304353","https://openalex.org/W2066834921","https://openalex.org/W2095619657","https://openalex.org/W2101330776","https://openalex.org/W2108491719","https://openalex.org/W2112596893","https://openalex.org/W2115794503","https://openalex.org/W2117077088","https://openalex.org/W2118050616","https://openalex.org/W2124871329","https://openalex.org/W2137012036","https://openalex.org/W2140798893","https://openalex.org/W2144231753","https://openalex.org/W2155320925","https://openalex.org/W2155611044","https://openalex.org/W2155723007","https://openalex.org/W2156070536","https://openalex.org/W2158714788","https://openalex.org/W2160325170","https://openalex.org/W2163485494","https://openalex.org/W2166558964","https://openalex.org/W2167869241","https://openalex.org/W2170652857","https://openalex.org/W2222499613","https://openalex.org/W2347330796"],"related_works":["https://openalex.org/W2257238402","https://openalex.org/W3087269855","https://openalex.org/W2156183678","https://openalex.org/W3085804803","https://openalex.org/W2085669663","https://openalex.org/W2337661159","https://openalex.org/W1972562403","https://openalex.org/W2522966908","https://openalex.org/W2008837776","https://openalex.org/W2978089072"],"abstract_inverted_index":{"BACKGROUND:":[0],"Protein-protein":[1],"interactions":[2,16,20,134,289],"(PPIs)":[3],"play":[4],"key":[5],"roles":[6],"in":[7,56,87,99,125,143,345],"various":[8],"cellular":[9],"functions.":[10],"In":[11,300],"addition,":[12,301],"some":[13,51],"critical":[14,136],"inter-species":[15],"such":[17,48,234,252],"as":[18,235,253,319,339,341],"host-pathogen":[19,132,164],"and":[21,43,117,153,163,241,243,271,286,296,322],"pathogenicity":[22],"occur":[23],"through":[24,30],"PPIs.":[25],"Phytopathogenic":[26],"bacteria":[27],"infect":[28],"hosts":[29],"attachment":[31],"to":[32,62,94,112,183],"host":[33,101],"tissue,":[34],"enzyme":[35],"secretion,":[36],"exopolysaccharides":[37],"production,":[38],"toxins":[39],"release,":[40],"iron":[41],"acquisition,":[42],"effector":[44],"proteins":[45,98,124,285,315,321],"secretion.":[46],"Many":[47],"mechanisms":[49],"involve":[50],"kind":[52],"of":[53,70,195,199,215,229,262,291,311,329],"protein-protein":[54],"interaction":[55,67,161,232,278,306,343],"hosts.":[57],"Our":[58],"first":[59],"aim":[60,110],"was":[61,111,146],"predict":[63],"the":[64,157,196,263,342],"whole":[65,103],"protein":[66,133,186,231,277,332],"pairs":[68,307],"(interactome)":[69],"Xanthomonas":[71],"oryzae":[72,74],"pathovar":[73],"(Xoo)":[75],"that":[76,82,130,316],"is":[77,168,268,350],"an":[78,269],"important":[79],"pathogenic":[80],"bacterium":[81],"causes":[83],"bacterial":[84],"blight":[85],"(BB)":[86],"rice.":[88],"We":[89,155],"developed":[90],"a":[91,114,118,169,210,223,247,330],"detection":[92],"protocol":[93],"find":[95],"possibly":[96],"interacting":[97,327],"its":[100],"using":[102,212,226,249],"genome":[104],"PPI":[105,141,173,200],"prediction":[106],"algorithms.":[107,201],"The":[108,325],"second":[109],"build":[113],"DB":[115],"server":[116,275],"bioinformatic":[119],"procedure":[120],"for":[121,127,175,188,276,280],"finding":[122],"target":[123],"Xoo":[126,144,264,314],"developing":[128],"pesticides":[129],"block":[131],"within":[135],"biochemical":[137],"pathways.":[138],"DESCRIPTION:":[139],"A":[140],"network":[142,162,260],"proteome":[145],"predicted":[147,171,318],"by":[148,181,337],"bioinformatics":[149],"algorithms:":[150],"PSIMAP,":[151],"PEIMAP,":[152],"iPfam.":[154,254],"present":[156],"resultant":[158,326],"species":[159],"specific":[160],"interaction,":[165],"XooNET.":[166],"It":[167,282],"comprehensive":[170],"initial":[172],"data":[174],"Xoo.":[176,281],"XooNET":[177,192,256,267,302,349],"can":[178,333],"be":[179,334],"used":[180],"experimentalists":[182],"pick":[184],"up":[185],"targets":[187],"blocking":[189],"pathological":[190],"interactions.":[191],"uses":[193],"most":[194],"major":[197],"types":[198],"They":[202],"are:":[203],"1)":[204],"Protein":[205,218],"Structural":[206],"Interactome":[207,220],"MAP":[208,221],"(PSIMAP),":[209,293],"method":[211,225,248],"structural":[213],"domain":[214],"SCOP,":[216],"2)":[217],"Experimental":[219],"(PEIMAP),":[222,295],"common":[224],"public":[227,273],"resources":[228],"experimental":[230],"information":[233,258,279],"HPRD,":[236],"BIND,":[237],"DIP,":[238],"MINT,":[239],"IntAct,":[240],"BioGrid,":[242],"3)":[244],"Domain-domain":[245],"interactions,":[246],"Pfam":[250],"domains":[251],"Additionally,":[255],"provides":[257,303],"on":[259],"properties":[261],"interactome.":[265],"CONCLUSION:":[266],"open":[270],"free":[272],"database":[274],"contains":[283],"4,538":[284],"26,932":[287],"possible":[288,305],"consisting":[290],"18,503":[292],"3,118":[294],"8,938":[297],"(iPfam)":[298],"pairs.":[299],"3,407":[304],"between":[308],"two":[309],"sets":[310],"proteins;":[312],"141":[313],"are":[317],"membrane":[320],"rice":[323],"proteomes.":[324],"partners":[328],"query":[331],"easily":[335],"retrieved":[336],"users":[338],"well":[340],"networks":[344],"graphical":[346],"web":[347],"interfaces.":[348],"freely":[351],"available":[352],"from":[353],"http://bioportal.kobic.kr/XooNET/.":[354]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-03T09:05:47.796612","created_date":"2025-10-10T00:00:00"}