{"id":"https://openalex.org/W1979573244","doi":"https://doi.org/10.1186/1471-2105-9-4","title":"An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis","display_name":"An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis","publication_year":2008,"publication_date":"2008-01-07","ids":{"openalex":"https://openalex.org/W1979573244","doi":"https://doi.org/10.1186/1471-2105-9-4","mag":"1979573244","pmid":"https://pubmed.ncbi.nlm.nih.gov/18179696"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056565633","display_name":"Romesh Stanislaus","orcid":null},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Romesh Stanislaus","raw_affiliation_strings":["The University of Texas M, D, Anderson Cancer Center, 1515 Holcombe Blvd,, Houston, TX 77030, USA. rstanisl@mdanderson.org","The University of Texas M.D. Anderson Cancer Center, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas M, D, Anderson Cancer Center, 1515 Holcombe Blvd,, Houston, TX 77030, USA. rstanisl@mdanderson.org","institution_ids":["https://openalex.org/I1343551460"]},{"raw_affiliation_string":"The University of Texas M.D. Anderson Cancer Center, Houston, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025064016","display_name":"John M. Arthur","orcid":"https://orcid.org/0000-0003-4342-4762"},"institutions":[{"id":"https://openalex.org/I153297377","display_name":"Medical University of South Carolina","ror":"https://ror.org/012jban78","country_code":"US","type":"education","lineage":["https://openalex.org/I153297377"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John M Arthur","raw_affiliation_strings":["Medical University of South Carolina, 171 Ashley Ave., Charleston, SC, 29425, USA","Medical University of South Carolina, Charleston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical University of South Carolina, 171 Ashley Ave., Charleston, SC, 29425, USA","institution_ids":["https://openalex.org/I153297377"]},{"raw_affiliation_string":"Medical University of South Carolina, Charleston, USA","institution_ids":["https://openalex.org/I153297377"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089004731","display_name":"Balaji Rajagopalan","orcid":"https://orcid.org/0000-0002-6883-7240"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Balaji Rajagopalan","raw_affiliation_strings":["Virginia Bioinformatics Institute, Washington Street, MC 0447, Blacksburg, VA, 24061, USA","Virginia Bioinformatics Institute, Blacksburg, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute, Washington Street, MC 0447, Blacksburg, VA, 24061, USA","institution_ids":[]},{"raw_affiliation_string":"Virginia Bioinformatics Institute, Blacksburg, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039361115","display_name":"Rick Moerschell","orcid":null},"institutions":[{"id":"https://openalex.org/I1327359573","display_name":"Bio-Rad (United States)","ror":"https://ror.org/03cjntr43","country_code":"US","type":"company","lineage":["https://openalex.org/I1327359573"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rick Moerschell","raw_affiliation_strings":["BioRad Laboratories, 1000 Alfred Nobel Dr., Hercules, CA, 94547, USA","BioRad Laboratories, 1000 Alfred Nobel Dr., Hercules, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioRad Laboratories, 1000 Alfred Nobel Dr., Hercules, CA, 94547, USA","institution_ids":["https://openalex.org/I1327359573"]},{"raw_affiliation_string":"BioRad Laboratories, 1000 Alfred Nobel Dr., Hercules, USA","institution_ids":["https://openalex.org/I1327359573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050447768","display_name":"Brian McGlothlen","orcid":null},"institutions":[{"id":"https://openalex.org/I1327359573","display_name":"Bio-Rad (United States)","ror":"https://ror.org/03cjntr43","country_code":"US","type":"company","lineage":["https://openalex.org/I1327359573"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian McGlothlen","raw_affiliation_strings":["BioRad Laboratories, 1000 Alfred Nobel Dr., Hercules, CA, 94547, USA","BioRad Laboratories, 1000 Alfred Nobel Dr., Hercules, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioRad Laboratories, 1000 Alfred Nobel Dr., Hercules, CA, 94547, USA","institution_ids":["https://openalex.org/I1327359573"]},{"raw_affiliation_string":"BioRad Laboratories, 1000 Alfred Nobel Dr., Hercules, USA","institution_ids":["https://openalex.org/I1327359573"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012322429","display_name":"Jonas S. Almeida","orcid":"https://orcid.org/0000-0002-7883-7922"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonas S Almeida","raw_affiliation_strings":["The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Blvd., Houston, TX, 77030, USA","The University of Texas M.D. Anderson Cancer Center, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Blvd., Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I1343551460"]},{"raw_affiliation_string":"The University of Texas M.D. Anderson Cancer Center, Houston, USA","institution_ids":["https://openalex.org/I1343551460"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5056565633"],"corresponding_institution_ids":["https://openalex.org/I1343551460"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.7542,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.65876746,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9408000111579895,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9408000111579895,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.006000000052154064,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.005900000222027302,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6606091260910034},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.56020587682724},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.4960220754146576},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4485347867012024},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.4130045175552368},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.41002291440963745},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4016827642917633},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3228371739387512},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19337740540504456}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6606091260910034},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.56020587682724},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.4960220754146576},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4485347867012024},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.4130045175552368},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.41002291440963745},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4016827642917633},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3228371739387512},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19337740540504456},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012016","descriptor_name":"Reference Values","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012016","descriptor_name":"Reference Values","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012016","descriptor_name":"Reference Values","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012016","descriptor_name":"Reference Values","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012016","descriptor_name":"Reference Values","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015180","descriptor_name":"Electrophoresis, Gel, Two-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015180","descriptor_name":"Electrophoresis, Gel, Two-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015180","descriptor_name":"Electrophoresis, Gel, Two-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015180","descriptor_name":"Electrophoresis, Gel, Two-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015180","descriptor_name":"Electrophoresis, Gel, Two-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-9-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18179696","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18179696","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:29d8b56dc0944403ba4cf596d196eb2c","is_oa":true,"landing_page_url":"https://doaj.org/article/29d8b56dc0944403ba4cf596d196eb2c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 4 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2231339","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2231339","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6299999952316284,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3198384385","display_name":null,"funder_award_id":"N01 HV028181","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G4388583276","display_name":null,"funder_award_id":"N01-HV-28181","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1979573244.pdf","grobid_xml":"https://content.openalex.org/works/W1979573244.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1481437707","https://openalex.org/W1967115261","https://openalex.org/W1979853788","https://openalex.org/W1985734365","https://openalex.org/W1988476709","https://openalex.org/W2004407704","https://openalex.org/W2018412008","https://openalex.org/W2020976460","https://openalex.org/W2027320734","https://openalex.org/W2046872827","https://openalex.org/W2048333869","https://openalex.org/W2062005992","https://openalex.org/W2092481726","https://openalex.org/W2111006345","https://openalex.org/W2113153354","https://openalex.org/W2121387541","https://openalex.org/W2146103026","https://openalex.org/W2149124035"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2002476357","https://openalex.org/W2391444248","https://openalex.org/W3104375528"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"spite":[2],"of":[3,29,59,69,102,116,150,195,203],"two-dimensional":[4],"gel":[5],"electrophoresis":[6],"(2-DE)":[7],"being":[8],"an":[9,109,164],"effective":[10],"and":[11,51,61,75,106,108,147,153,180,208,213,215,224],"widely":[12],"used":[13,182],"method":[14],"to":[15,26,49,54,87,121,176],"screen":[16],"the":[17,27,67,100,103,148,151,158,173,177,198],"proteome,":[18],"its":[19],"data":[20,32,42,63,82,123,159,166,225],"standardization":[21,64],"has":[22,44,65],"still":[23],"not":[24],"matured":[25],"level":[28],"microarray":[30],"genomics":[31,48],"or":[33],"mass":[34],"spectrometry":[35],"approaches.":[36],"The":[37,56],"trend":[38],"toward":[39],"identifying":[40],"encompassing":[41,165],"standards":[43],"been":[45],"expanding":[46],"from":[47,118,156,200],"transcriptomics,":[50],"more":[52],"recently":[53],"proteomics.":[55],"relative":[57],"success":[58],"genomic":[60],"transcriptomic":[62],"enabled":[66],"development":[68],"central":[70,119],"repositories":[71],"such":[72,132],"as":[73,172],"GenBank":[74],"Gene":[76],"Expression":[77],"Omnibus.":[78],"An":[79],"equivalent":[80],"2-DE-centric":[81],"structure":[83,111,167],"would":[84],"similarly":[85],"have":[86],"include":[88],"a":[89,114,133,193,201],"balance":[90,134],"among":[91],"raw":[92],"data,":[93],"basic":[94],"feature":[95],"detection":[96],"results,":[97],"sufficiency":[98],"in":[99,125],"description":[101],"experimental":[104],"context":[105],"methods,":[107],"overall":[110],"that":[112],"facilitates":[113],"diversity":[115],"usages,":[117],"reposition":[120],"local":[122],"representation":[124],"LIMs":[126],"systems.":[127],"RESULTS":[128],"&":[129],"CONCLUSION:":[130],"Achieving":[131],"can":[135],"only":[136],"be":[137],"accomplished":[138],"through":[139],"several":[140],"iterations":[141],"involving":[142],"bioinformaticians,":[143],"bench":[144],"molecular":[145],"biologists,":[146],"manufacturers":[149],"equipment":[152],"commercial":[154],"software":[155],"which":[157],"is":[160,168,190,216],"primarily":[161],"generated.":[162],"Such":[163],"described":[169],"here,":[170],"developed":[171],"mature":[174],"successor":[175],"well":[178],"established":[179],"broadly":[181],"earlier":[183],"version.":[184],"A":[185],"public":[186],"repository,":[187],"AGML":[188],"Central,":[189],"configured":[191],"with":[192,210,220],"suite":[194],"tools":[196,212],"for":[197,222],"conversion":[199],"variety":[202],"popular":[204],"formats,":[205],"web-based":[206],"visualization,":[207],"interoperation":[209],"other":[211],"repositories,":[214],"particularly":[217],"mass-spectrometry":[218],"oriented":[219],"I/O":[221],"annotation":[223],"analysis.":[226]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
