{"id":"https://openalex.org/W2141946210","doi":"https://doi.org/10.1186/1471-2105-9-378","title":"SQUAT: A web tool to mine human, murine and avian SAGE data","display_name":"SQUAT: A web tool to mine human, murine and avian SAGE data","publication_year":2008,"publication_date":"2008-09-18","ids":{"openalex":"https://openalex.org/W2141946210","doi":"https://doi.org/10.1186/1471-2105-9-378","mag":"2141946210","pmid":"https://pubmed.ncbi.nlm.nih.gov/18801154"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-378","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-378","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-378","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-378","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037314427","display_name":"Johan Leyritz","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100775","display_name":"Laboratoire de Biologie et Mod\u00e9lisation de la Cellule","ror":"https://ror.org/01bj4fd12","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210100775"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Johan Leyritz","raw_affiliation_strings":["Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, CNRS, UMR5534, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France. jleyritz@gmail.com","Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France","Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France"],"affiliations":[{"raw_affiliation_string":"Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, CNRS, UMR5534, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France. jleyritz@gmail.com","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210100775"]},{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070355601","display_name":"St\u00e9phane Schicklin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159560","display_name":"Centre de G\u00e9n\u00e9tique Mol\u00e9culaire","ror":"https://ror.org/052ahj806","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210114748","https://openalex.org/I4210139971","https://openalex.org/I4210159560"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phane Schicklin","raw_affiliation_strings":["Equipe \"Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations\", Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, CNRS, UMR5534, Lyon, France","Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France"],"affiliations":[{"raw_affiliation_string":"Equipe \"Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations\", Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, CNRS, UMR5534, Lyon, France","institution_ids":["https://openalex.org/I4210159560","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053625407","display_name":"Sylvain Blachon","orcid":null},"institutions":[{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210159560","display_name":"Centre de G\u00e9n\u00e9tique Mol\u00e9culaire","ror":"https://ror.org/052ahj806","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210114748","https://openalex.org/I4210139971","https://openalex.org/I4210159560"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sylvain Blachon","raw_affiliation_strings":["Equipe \"Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations\", Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, CNRS, UMR5534, Lyon, France","Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France","Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France"],"affiliations":[{"raw_affiliation_string":"Equipe \"Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations\", Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, CNRS, UMR5534, Lyon, France","institution_ids":["https://openalex.org/I4210159560","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056295276","display_name":"C\u00e9line Keime","orcid":"https://orcid.org/0000-0001-7604-3814"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9line Keime","raw_affiliation_strings":["P\u00f4le Rh\u00f4ne-Alpin de BioInformatique, Universit\u00e9 de Lyon, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, Lyon, France","P\u00f4le Rh\u00f4ne-Alpin de BioInformatique, Universit\u00e9 de Lyon, Lyon, France"],"affiliations":[{"raw_affiliation_string":"P\u00f4le Rh\u00f4ne-Alpin de BioInformatique, Universit\u00e9 de Lyon, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, Lyon, France","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"P\u00f4le Rh\u00f4ne-Alpin de BioInformatique, Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048794271","display_name":"C\u00e9line Robardet","orcid":"https://orcid.org/0000-0002-8583-9408"},"institutions":[{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9line Robardet","raw_affiliation_strings":["Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111491370","display_name":"Jean\u2010Fran\u00e7ois Boulicaut","orcid":null},"institutions":[{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Fran\u00e7ois Boulicaut","raw_affiliation_strings":["Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111580890","display_name":"J\u00e9r\u00e9my Besson","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J\u00e9r\u00e9my Besson","raw_affiliation_strings":["Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015661882","display_name":"Ruggero G. Pensa","orcid":"https://orcid.org/0000-0001-5145-3438"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ruggero G Pensa","raw_affiliation_strings":["Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, 43 bd du 11 novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'InfoRmatique en Image et Syst\u00e8mes d'information, UMR 5205 CNRS, B\u00e2timent Blaise Pascal, INSA Lyon, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I48430043","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089245484","display_name":"Olivier Gandrillon","orcid":"https://orcid.org/0000-0002-3676-6513"},"institutions":[{"id":"https://openalex.org/I4210159560","display_name":"Centre de G\u00e9n\u00e9tique Mol\u00e9culaire","ror":"https://ror.org/052ahj806","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210114748","https://openalex.org/I4210139971","https://openalex.org/I4210159560"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Gandrillon","raw_affiliation_strings":["Equipe \"Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations\", Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, CNRS, UMR5534, Lyon, France","Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France"],"affiliations":[{"raw_affiliation_string":"Equipe \"Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations\", Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, F-69622, Universit\u00e9 Lyon 1, Villeurbanne, CNRS, UMR5534, Lyon, France","institution_ids":["https://openalex.org/I4210159560","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Equipe Bases Mol\u00e9culaires de l'Autorenouvellement et de ses Alt\u00e9rations, Universit\u00e9 de Lyon, Centre de G\u00e9n\u00e9tique Mol\u00e9culaire et Cellualire, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5037314427"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210100775","https://openalex.org/I48430043"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9628,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.75109679,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9","issue":"1","first_page":"378","last_page":"378"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/squat","display_name":"Squat","score":0.645393431186676},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6282160878181458},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.6000679731369019},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4792371094226837},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4563924968242645},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.42119163274765015},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4208148121833801},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32982581853866577},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3206033706665039},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2355942726135254},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21514585614204407}],"concepts":[{"id":"https://openalex.org/C2778820510","wikidata":"https://www.wikidata.org/wiki/Q1755746","display_name":"Squat","level":2,"score":0.645393431186676},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6282160878181458},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.6000679731369019},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4792371094226837},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4563924968242645},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.42119163274765015},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4208148121833801},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32982581853866577},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3206033706665039},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2355942726135254},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21514585614204407},{"id":"https://openalex.org/C42407357","wikidata":"https://www.wikidata.org/wiki/Q521","display_name":"Physiology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001717","descriptor_name":"Birds","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001717","descriptor_name":"Birds","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001717","descriptor_name":"Birds","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-9-378","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-378","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-378","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18801154","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18801154","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:iris.unito.it:2318/67780","is_oa":true,"landing_page_url":"http://hdl.handle.net/2318/67780","pdf_url":"http://www.biomedcentral.com/1471-2105/9/378","source":{"id":"https://openalex.org/S4306400637","display_name":"Institutional Research Information System University of Turin (University of Turin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I55143463","host_organization_name":"University of Turin","host_organization_lineage":["https://openalex.org/I55143463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-00425133v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00425133","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2008, 9, pp.378. &#x27E8;10.1186/1471-2105-9-378&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:dnet:people______::cd565f4f20a21c290da63c5c2c534384","is_oa":true,"landing_page_url":"https://openportal.isti.cnr.it/doc?id=people______::cd565f4f20a21c290da63c5c2c534384","pdf_url":null,"source":{"id":"https://openalex.org/S7407055261","display_name":"ISTI Open Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics 9 (2008): 378\u2013389. doi:10.1186/1471-2105-9-378","raw_type":"Journal article"},{"id":"pmh:oai:doaj.org/article:325d3904916e42729c882c8f357d9629","is_oa":true,"landing_page_url":"https://doaj.org/article/325d3904916e42729c882c8f357d9629","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 378 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2567996","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-9-378","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-378","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-378","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-378","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322363","display_name":"Ligue Contre le Cancer","ror":"https://ror.org/00rkrv905"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320324036","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141946210.pdf","grobid_xml":"https://content.openalex.org/works/W2141946210.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1486300120","https://openalex.org/W1488964550","https://openalex.org/W1493025060","https://openalex.org/W1503150057","https://openalex.org/W1518838580","https://openalex.org/W1538006201","https://openalex.org/W1538992415","https://openalex.org/W1721137721","https://openalex.org/W1796792199","https://openalex.org/W1814508501","https://openalex.org/W1965110770","https://openalex.org/W1973910682","https://openalex.org/W1980652169","https://openalex.org/W2002830978","https://openalex.org/W2004343020","https://openalex.org/W2010888033","https://openalex.org/W2027254934","https://openalex.org/W2035055162","https://openalex.org/W2038855036","https://openalex.org/W2054800386","https://openalex.org/W2069669856","https://openalex.org/W2091198609","https://openalex.org/W2105883975","https://openalex.org/W2107903949","https://openalex.org/W2108408244","https://openalex.org/W2110489138","https://openalex.org/W2122683221","https://openalex.org/W2136128502","https://openalex.org/W2136145671","https://openalex.org/W2136483001","https://openalex.org/W2138073318","https://openalex.org/W2138862313","https://openalex.org/W2144544802","https://openalex.org/W2147741644","https://openalex.org/W2993222596","https://openalex.org/W3146391939","https://openalex.org/W4213387068","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4399124891","https://openalex.org/W4381571608","https://openalex.org/W2033835987","https://openalex.org/W4392894140","https://openalex.org/W2936116675","https://openalex.org/W2291027050","https://openalex.org/W2307569040","https://openalex.org/W1018570427","https://openalex.org/W1483126190","https://openalex.org/W4248750016"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}
