{"id":"https://openalex.org/W2127484814","doi":"https://doi.org/10.1186/1471-2105-9-366","title":"ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)","display_name":"ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)","publication_year":2008,"publication_date":"2008-09-09","ids":{"openalex":"https://openalex.org/W2127484814","doi":"https://doi.org/10.1186/1471-2105-9-366","mag":"2127484814","pmid":"https://pubmed.ncbi.nlm.nih.gov/18782453"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-366","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-366","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-366","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-366","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012004257","display_name":"Thomas D. Otto","orcid":"https://orcid.org/0000-0002-1246-7404"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Thomas D Otto","raw_affiliation_strings":["Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil. otto@fiocruz.br","Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil. otto@fiocruz.br","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078520658","display_name":"Leonardo Henrique Ferreira Gomes","orcid":"https://orcid.org/0000-0002-1721-0608"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I122140584","display_name":"Universidade Federal do Rio de Janeiro","ror":"https://ror.org/03490as77","country_code":"BR","type":"education","lineage":["https://openalex.org/I122140584"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Leonardo HF Gomes","raw_affiliation_strings":["Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil","Medicine Faculty, UFRJ, Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Medicine Faculty, UFRJ, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I122140584"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107429016","display_name":"Marcelo Alves-Ferreira","orcid":null},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marcelo Alves-Ferreira","raw_affiliation_strings":["Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103073124","display_name":"Ant\u00f4nio Bas\u00edlio de Miranda","orcid":"https://orcid.org/0000-0002-4977-7350"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Antonio B de Miranda","raw_affiliation_strings":["Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002952445","display_name":"Wim Degrave","orcid":null},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Wim M Degrave","raw_affiliation_strings":["Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Functional Genomics and Bioinformatics, IOC, Fiocruz, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5012004257"],"corresponding_institution_ids":["https://openalex.org/I52325"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9815,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.75495067,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"9","issue":"1","first_page":"366","last_page":"366"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5856999754905701,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5856999754905701,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.05820000171661377,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.05009999871253967,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6439691185951233},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5963872075080872},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5531297922134399},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48804035782814026},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.40910208225250244},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38391464948654175},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17225563526153564}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6439691185951233},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5963872075080872},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5531297922134399},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48804035782814026},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40910208225250244},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38391464948654175},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17225563526153564},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-9-366","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-366","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-366","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18782453","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18782453","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.gla.ac.uk:148096","is_oa":false,"landing_page_url":"http://eprints.gla.ac.uk/view/author/44339.html>","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:americanae.aecid.es:2325599","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=2325599","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da FIOCRUZ (ARCA)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:arca.fiocruz.br:icict/32139","is_oa":true,"landing_page_url":"https://arca.fiocruz.br/handle/icict/32139","pdf_url":null,"source":{"id":"https://openalex.org/S7407055450","display_name":"Arca - Reposit\u00f3rio Institucional da Fiocruz","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:07c55fdc3dba4bca949415422a27063a","is_oa":true,"landing_page_url":"https://doaj.org/article/07c55fdc3dba4bca949415422a27063a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 366 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2559850","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2559850","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.arca.fiocruz.br:icict/32139","is_oa":true,"landing_page_url":"https://www.arca.fiocruz.br/handle/icict/32139","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da FIOCRUZ (ARCA)","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-366","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-366","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-366","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322749","display_name":"Funda\u00e7\u00e3o Carlos Chagas Filho de Amparo \u00e0 Pesquisa do Estado do Rio de Janeiro","ror":"https://ror.org/03kk0s825"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127484814.pdf","grobid_xml":"https://content.openalex.org/works/W2127484814.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1529880089","https://openalex.org/W1578516052","https://openalex.org/W1635391495","https://openalex.org/W1897166569","https://openalex.org/W1966585515","https://openalex.org/W1966711026","https://openalex.org/W1971332709","https://openalex.org/W1974978155","https://openalex.org/W1993516056","https://openalex.org/W1996423252","https://openalex.org/W2004591556","https://openalex.org/W2026035629","https://openalex.org/W2026098537","https://openalex.org/W2030104735","https://openalex.org/W2033538436","https://openalex.org/W2099809434","https://openalex.org/W2102385769","https://openalex.org/W2106882534","https://openalex.org/W2107282968","https://openalex.org/W2111330606","https://openalex.org/W2121016876","https://openalex.org/W2124281279","https://openalex.org/W2127465481","https://openalex.org/W2128114769","https://openalex.org/W2132505033","https://openalex.org/W2147781493","https://openalex.org/W2148072340","https://openalex.org/W2151899848","https://openalex.org/W2155159495","https://openalex.org/W2158645345","https://openalex.org/W2158714788","https://openalex.org/W2164075646","https://openalex.org/W2166265186","https://openalex.org/W2168909179","https://openalex.org/W2170302951","https://openalex.org/W4243495532"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"BACKGROUND:":[0],"Genome":[1],"survey":[2],"sequences":[3,43,77,92,227],"(GSS)":[4],"offer":[5],"a":[6,11,47,98,113,127,131,140,179,231,247],"preliminary":[7],"global":[8],"view":[9],"of":[10,28,35,41,52,62,75,95,100,142,158,172,181,183,189,203,212,246,263,297,305],"genome":[12,48,63,310],"since,":[13],"unlike":[14],"ESTs,":[15],"they":[16],"cover":[17],"coding":[18],"as":[19,21,55,105],"well":[20],"non-coding":[22],"DNA":[23],"and":[24,39,67,88,111,197,222,240,255,290,308],"include":[25],"repetitive":[26,42,76,124,213,226],"regions":[27],"the":[29,36,60,73,79,137,150,155,170,193,204,244,253,264,286,295,298,303,309],"genome.":[30],"A":[31],"more":[32,248],"precise":[33],"estimation":[34,61],"nature,":[37],"quantity":[38],"variability":[40],"very":[44],"early":[45],"in":[46,69,97,126,146,165,192,215,230,237,272,300],"sequencing":[49,176,279,306],"project":[50],"is":[51,83,195,313],"considerable":[53],"importance,":[54],"such":[56],"data":[57],"strongly":[58],"influence":[59],"coverage,":[64],"library":[65],"quality":[66],"progress":[68],"scaffold":[70],"construction.":[71],"Also,":[72],"elimination":[74],"from":[78,149,252],"initial":[80],"assembly":[81,271],"process":[82],"important":[84,161],"to":[85,139,174,219,270,294,302],"avoid":[86],"errors":[87],"unnecessary":[89],"complexity.":[90],"Repetitive":[91],"are":[93,199],"also":[94,168,260],"interest":[96],"variety":[99],"other":[101],"studies,":[102],"for":[103,122,201,210,316],"instance":[104],"molecular":[106],"markers.":[107],"RESULTS:":[108],"We":[109,167],"designed":[110],"implemented":[112],"straightforward":[114,221],"pipeline":[115,138],"called":[116],"ReRep,":[117],"which":[118],"combines":[119],"bioinformatics":[120],"tools":[121],"identifying":[123],"structures":[125],"GSS":[128,216,234],"dataset.":[129],"In":[130],"case":[132],"study,":[133],"we":[134],"first":[135],"applied":[136],"set":[141,180],"970":[143],"GSSs,":[144],"sequenced":[145],"our":[147,238],"laboratory":[148],"human":[151],"pathogen":[152],"Leishmania":[153],"braziliensis,":[154],"causative":[156],"agent":[157],"leishmaniosis,":[159],"an":[160,184,273],"public":[162],"health":[163],"problem":[164],"Brazil.":[166],"verified":[169],"applicability":[171],"ReRep":[173,208,259,312],"new":[175],"technologies":[177],"using":[178,280],"454-reads":[182],"Escheria":[185],"coli.":[186],"The":[187,207,283],"behaviour":[188],"several":[190],"parameters":[191,284],"algorithm":[194,287],"evaluated":[196],"suggestions":[198],"made":[200],"tuning":[202],"analysis.":[205],"CONCLUSION:":[206],"approach":[209],"identification":[211],"elements":[214],"datasets":[217],"proved":[218],"be":[220,292],"efficient.":[223],"Several":[224],"potential":[225],"were":[228],"found":[229],"L.":[232],"braziliensis":[233],"dataset":[235,251,275],"generated":[236],"laboratory,":[239],"further":[241],"validated":[242],"by":[243,277],"analysis":[245],"complete":[249],"genomic":[250],"EMBL":[254],"Sanger":[256],"Centre":[257],"databases.":[258],"identified":[261],"most":[262],"E.":[265],"coli":[266],"K12":[267],"repeats":[268],"prior":[269],"example":[274],"obtained":[276],"automated":[278],"454":[281],"technology.":[282],"controlling":[285],"behaved":[288],"consistently":[289],"may":[291],"tuned":[293],"properties":[296],"dataset,":[299],"particular":[301],"length":[304],"reads":[307],"coverage.":[311],"freely":[314],"available":[315],"academic":[317],"use":[318],"at":[319],"http://bioinfo.pdtis.fiocruz.br/ReRep/.":[320]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
