{"id":"https://openalex.org/W2051871732","doi":"https://doi.org/10.1186/1471-2105-9-277","title":"Semantic role labeling for protein transport predicates","display_name":"Semantic role labeling for protein transport predicates","publication_year":2008,"publication_date":"2008-06-11","ids":{"openalex":"https://openalex.org/W2051871732","doi":"https://doi.org/10.1186/1471-2105-9-277","mag":"2051871732","pmid":"https://pubmed.ncbi.nlm.nih.gov/18547432"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-277","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-277","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-277","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-277","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068978543","display_name":"Steven Bethard","orcid":"https://orcid.org/0000-0001-9560-6491"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Bethard","raw_affiliation_strings":["Computer Science Department, University of Colorado at Boulder, Boulder, CO, USA. steven.bethard@colorado.edu","Computer Science Department, University of Colorado at Boulder, Boulder, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Colorado at Boulder, Boulder, CO, USA. steven.bethard@colorado.edu","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"Computer Science Department, University of Colorado at Boulder, Boulder, USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA","National Center for Biotechnology Information, National Library of Medicine, Bethesda, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, USA#TAB#","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010984350","display_name":"James Martin","orcid":"https://orcid.org/0000-0002-9654-3864"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James H Martin","raw_affiliation_strings":["Computer Science Department, University of Colorado at Boulder, Boulder, CO, USA","Computer Science Department, University of Colorado at Boulder, Boulder, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Colorado at Boulder, Boulder, CO, USA","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"Computer Science Department, University of Colorado at Boulder, Boulder, USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041860080","display_name":"Lawrence Hunter","orcid":"https://orcid.org/0000-0003-1455-3370"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lawrence Hunter","raw_affiliation_strings":["Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA","Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA","institution_ids":["https://openalex.org/I921990950"]},{"raw_affiliation_string":"Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, USA","institution_ids":["https://openalex.org/I921990950"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083081872"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.6896,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.83168814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9","issue":"1","first_page":"277","last_page":"277"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8808000087738037,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8808000087738037,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.031599998474121094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.02889999933540821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chunking","display_name":"Chunking (psychology)","score":0.8970838785171509},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.79655921459198},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7601742744445801},{"id":"https://openalex.org/keywords/semantic-role-labeling","display_name":"Semantic role labeling","score":0.6984654664993286},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6888763308525085},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.644235372543335},{"id":"https://openalex.org/keywords/phrase","display_name":"Phrase","score":0.5772631168365479},{"id":"https://openalex.org/keywords/noun-phrase","display_name":"Noun phrase","score":0.42292657494544983},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.1466662585735321},{"id":"https://openalex.org/keywords/noun","display_name":"Noun","score":0.10761883854866028}],"concepts":[{"id":"https://openalex.org/C203357204","wikidata":"https://www.wikidata.org/wiki/Q1089605","display_name":"Chunking (psychology)","level":2,"score":0.8970838785171509},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.79655921459198},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7601742744445801},{"id":"https://openalex.org/C67277372","wikidata":"https://www.wikidata.org/wiki/Q7449085","display_name":"Semantic role labeling","level":3,"score":0.6984654664993286},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6888763308525085},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.644235372543335},{"id":"https://openalex.org/C2776224158","wikidata":"https://www.wikidata.org/wiki/Q187931","display_name":"Phrase","level":2,"score":0.5772631168365479},{"id":"https://openalex.org/C153962237","wikidata":"https://www.wikidata.org/wiki/Q1401131","display_name":"Noun phrase","level":3,"score":0.42292657494544983},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.1466662585735321},{"id":"https://openalex.org/C121934690","wikidata":"https://www.wikidata.org/wiki/Q1084","display_name":"Noun","level":2,"score":0.10761883854866028}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-9-277","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-277","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-277","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18547432","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18547432","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:osti.gov:1626355","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626355","pdf_url":"https://www.osti.gov/servlets/purl/1626355","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:fcaf1ae562a24ca7bf83c01ad30a9952","is_oa":false,"landing_page_url":"https://doaj.org/article/fcaf1ae562a24ca7bf83c01ad30a9952","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 277 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2474622","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2474622","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-277","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-277","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-277","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.7400000095367432,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1668107226","display_name":"IMPROVED TRANSPORT PROCESSES FOR CCSM","funder_award_id":"FG02-04ER63870","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3046505630","display_name":null,"funder_award_id":"DE-AC05-06OR23100","funder_id":"https://openalex.org/F4320332382","funder_display_name":"Oak Ridge Institute for Science and Education"},{"id":"https://openalex.org/G3326317110","display_name":"MRI: Collaborative Research: Acquisition of an IBM BG/L Supercomputer","funder_award_id":"0420873","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3392237599","display_name":null,"funder_award_id":"DE-AC05-06OR23100","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3905420400","display_name":"Academic Research Infrastructure:  Acquisition of a Grand   Challenge Data Laboratory","funder_award_id":"9601817","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3945006501","display_name":null,"funder_award_id":"R01LM009254","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4764068523","display_name":null,"funder_award_id":"-AC05-06OR23100","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5169022270","display_name":null,"funder_award_id":"R01 LM008111","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5943759871","display_name":null,"funder_award_id":"CNS-0420873","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6358395522","display_name":null,"funder_award_id":"5R01LM008111-03","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G6508667619","display_name":null,"funder_award_id":"R01 LM009254","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7186324567","display_name":null,"funder_award_id":"DE-FG02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G803281476","display_name":null,"funder_award_id":"DE-AC05-06OR23100","funder_id":"https://openalex.org/F4320308963","funder_display_name":"Oak Ridge Associated Universities"},{"id":"https://openalex.org/G8568172940","display_name":null,"funder_award_id":"R01LM009254","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8684078510","display_name":null,"funder_award_id":"DE-FG02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8820807475","display_name":null,"funder_award_id":"number DE-AC05-06OR23100","funder_id":"https://openalex.org/F4320332382","funder_display_name":"Oak Ridge Institute for Science and Education"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306101","display_name":"National Aeronautics and Space Administration","ror":"https://ror.org/027ka1x80"},{"id":"https://openalex.org/F4320308377","display_name":"National Center for Atmospheric Research","ror":"https://ror.org/05cvfcr44"},{"id":"https://openalex.org/F4320308963","display_name":"Oak Ridge Associated Universities","ror":"https://ror.org/0526p1y61"},{"id":"https://openalex.org/F4320311508","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332382","display_name":"Oak Ridge Institute for Science and Education","ror":"https://ror.org/0526p1y61"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2051871732.pdf","grobid_xml":"https://content.openalex.org/works/W2051871732.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W12836875","https://openalex.org/W25333297","https://openalex.org/W56350200","https://openalex.org/W72995142","https://openalex.org/W155362895","https://openalex.org/W186166080","https://openalex.org/W204260652","https://openalex.org/W1535936886","https://openalex.org/W1544826213","https://openalex.org/W1552716293","https://openalex.org/W1553529581","https://openalex.org/W1601405544","https://openalex.org/W1632114991","https://openalex.org/W1648311451","https://openalex.org/W1773803948","https://openalex.org/W1818857488","https://openalex.org/W1967093286","https://openalex.org/W1981492645","https://openalex.org/W1982488716","https://openalex.org/W1988995507","https://openalex.org/W1994306321","https://openalex.org/W2000844908","https://openalex.org/W2025209629","https://openalex.org/W2035428332","https://openalex.org/W2040122832","https://openalex.org/W2043099927","https://openalex.org/W2045951030","https://openalex.org/W2046240571","https://openalex.org/W2049701884","https://openalex.org/W2053673723","https://openalex.org/W2062163602","https://openalex.org/W2067994019","https://openalex.org/W2091896764","https://openalex.org/W2096525273","https://openalex.org/W2113202266","https://openalex.org/W2126851059","https://openalex.org/W2127241285","https://openalex.org/W2130031580","https://openalex.org/W2132972409","https://openalex.org/W2133702079","https://openalex.org/W2134612861","https://openalex.org/W2138043057","https://openalex.org/W2145310422","https://openalex.org/W2152653671","https://openalex.org/W2153367954","https://openalex.org/W2153813398","https://openalex.org/W2158847908","https://openalex.org/W2159053585","https://openalex.org/W2162629891","https://openalex.org/W2163794943","https://openalex.org/W2169918010","https://openalex.org/W2272153972","https://openalex.org/W2403542349","https://openalex.org/W2592549418","https://openalex.org/W2915816387","https://openalex.org/W2916242605","https://openalex.org/W4231741839","https://openalex.org/W4236324471"],"related_works":["https://openalex.org/W2010807697","https://openalex.org/W4236833069","https://openalex.org/W2044479660","https://openalex.org/W2135991045","https://openalex.org/W2033585854","https://openalex.org/W3102012802","https://openalex.org/W2385874868","https://openalex.org/W1599450222","https://openalex.org/W2051871732","https://openalex.org/W4381248170"],"abstract_inverted_index":{"BACKGROUND:":[0],"Automatic":[1],"semantic":[2,17,46,141,181,215],"role":[3,216,239],"labeling":[4,240],"(SRL)":[5],"is":[6,296],"a":[7,40,95,116,123,221],"natural":[8],"language":[9],"processing":[10],"(NLP)":[11],"technique":[12,20],"that":[13,272],"maps":[14],"sentences":[15,59],"to":[16,104,177,214,220,257,306],"representations.":[18],"This":[19,279],"has":[21],"been":[22],"widely":[23],"studied":[24],"in":[25,33,54],"the":[26,45,66,74,110,140,153,210,234,259,263,301],"recent":[27],"years,":[28],"but":[29],"mostly":[30],"with":[31,86,94,152,183,224,242,291],"data":[32,266],"newswire":[34],"domains.":[35],"Here,":[36],"we":[37,90,254],"report":[38],"on":[39,61],"SRL":[41],"model":[42],"for":[43,139,281],"identifying":[44],"roles":[47,80,142,182],"of":[48,69,76,115,125,130,155,170,251],"biomedical":[49,243],"predicates":[50,136,225],"describing":[51,128],"protein":[52,78,117,179,193,246,283,308],"transport":[53,79,118,180,284,309],"GeneRIFs":[55,127,287],"-":[56],"manually":[57,191],"curated":[58],"focusing":[60],"gene":[62],"functions.":[63],"To":[64],"avoid":[65],"computational":[67],"cost":[68],"syntactic":[70,87],"parsing,":[71],"and":[72,98,146,164,186,195,198,237,248,267,295],"because":[73],"boundaries":[75,247],"our":[77,171],"often":[81],"did":[82],"not":[83],"match":[84],"up":[85],"phrase":[88],"boundaries,":[89,194],"approached":[91],"this":[92],"problem":[93],"word-chunking":[96,157,211],"paradigm":[97,213],"trained":[99,149],"support":[100],"vector":[101],"machine":[102],"classifiers":[103],"classify":[105],"words":[106],"as":[107,275,277],"being":[108],"at":[109],"beginning,":[111],"inside":[112],"or":[113],"outside":[114],"role.":[119],"RESULTS:":[120],"We":[121,148,207],"collected":[122],"set":[124],"837":[126],"movements":[129],"proteins":[131,292],"between":[132],"cellular":[133],"components,":[134],"whose":[135],"were":[137,175,255],"annotated":[138,192],"AGENT,":[143],"PATIENT,":[144],"ORIGIN":[145],"DESTINATION.":[147],"these":[150],"models":[151,174,271],"features":[154,159,165,241,244],"previous":[156,230],"models,":[158,163],"adapted":[160,209],"from":[161,167,228,286],"phrase-chunking":[162],"derived":[166],"an":[168],"analysis":[169],"data.":[172],"Our":[173],"able":[176,256],"label":[178],"87.6%":[184],"precision":[185,197],"79.0%":[187],"recall":[188,200],"when":[189,201],"using":[190,202],"87.0%":[196],"74.5%":[199],"automatically":[203],"identified":[204,293],"ones.":[205],"CONCLUSION:":[206],"successfully":[208],"classification":[212],"labeling,":[217],"applying":[218],"it":[219],"new":[222,264],"domain":[223,265],"completely":[226],"absent":[227],"any":[229],"studies.":[231],"By":[232],"combining":[233],"traditional":[235],"word":[236],"phrasal":[238],"like":[245],"MEDPOST":[249],"part":[250],"speech":[252],"tags,":[253],"address":[258],"challenges":[260],"posed":[261],"by":[262],"subsequently":[268],"build":[269],"robust":[270,299],"achieved":[273],"F-measures":[274],"high":[276],"83.1.":[278],"system":[280],"extracting":[282],"information":[285],"performs":[288],"well":[289],"even":[290],"automatically,":[294],"therefore":[297],"more":[298],"than":[300],"rule-based":[302],"methods":[303],"previously":[304],"used":[305],"extract":[307],"roles.":[310]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
