{"id":"https://openalex.org/W2035486209","doi":"https://doi.org/10.1186/1471-2105-9-243","title":"MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data","display_name":"MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data","publication_year":2008,"publication_date":"2008-05-20","ids":{"openalex":"https://openalex.org/W2035486209","doi":"https://doi.org/10.1186/1471-2105-9-243","mag":"2035486209","pmid":"https://pubmed.ncbi.nlm.nih.gov/18492270"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-243","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-243","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-243","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-243","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087020047","display_name":"Bryan Chi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210153208","display_name":"Canadian Centre for Applied Research in Cancer Control","ror":"https://ror.org/05wpaeg31","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210153208"]},{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Bryan Chi","raw_affiliation_strings":["Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada. bchi@bccrc.ca","Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada. bchi@bccrc.ca","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I4210153208"]},{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051699771","display_name":"Ronald J. deLeeuw","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ronald J deLeeuw","raw_affiliation_strings":["Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada","Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022167873","display_name":"Bradley P. Coe","orcid":"https://orcid.org/0000-0001-8471-4016"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bradley P Coe","raw_affiliation_strings":["Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada","Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113567130","display_name":"Raymond T. Ng","orcid":"https://orcid.org/0000-0003-3692-8524"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Raymond T Ng","raw_affiliation_strings":["Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada","Department of Computer Science, University of British Columbia, Vancouver, BC, Canada","Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada","Department of Computer Science, University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015304965","display_name":"Calum MacAulay","orcid":"https://orcid.org/0000-0003-4440-2792"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Calum MacAulay","raw_affiliation_strings":["Department of Cancer Imaging, British Columbia Cancer Research Centre, Vancouver, BC, Canada","Department of Cancer Imaging, British Columbia Cancer Research Centre, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cancer Imaging, British Columbia Cancer Research Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Cancer Imaging, British Columbia Cancer Research Centre, Vancouver, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013908616","display_name":"Wan L. Lam","orcid":"https://orcid.org/0000-0002-0945-0644"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wan L Lam","raw_affiliation_strings":["Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada","Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Cancer Genetics and Developmental Biology, British Columbia Cancer Research Centre, Vancouver, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5087020047"],"corresponding_institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I4210153208"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.3078,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.92344378,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"9","issue":"1","first_page":"243","last_page":"243"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.760699987411499,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.760699987411499,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.15139999985694885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.017799999564886093,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.616143524646759},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5680927038192749},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.503013551235199},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49104785919189453},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.4880613088607788},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.47246789932250977},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4158884286880493},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4127028286457062},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3759489953517914},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.355745404958725},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3412584960460663},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28832972049713135},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26081764698028564},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11159324645996094}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.616143524646759},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5680927038192749},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.503013551235199},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49104785919189453},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.4880613088607788},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.47246789932250977},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4158884286880493},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4127028286457062},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3759489953517914},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.355745404958725},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3412584960460663},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28832972049713135},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26081764698028564},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11159324645996094},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-9-243","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-243","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-243","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18492270","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18492270","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:circle.library.ubc.ca:2429/56086","is_oa":true,"landing_page_url":"http://hdl.handle.net/2429/56086","pdf_url":null,"source":{"id":"https://openalex.org/S4377196297","display_name":"cIRcle (University of British Columbia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I141945490","host_organization_name":"University of British Columbia","host_organization_lineage":["https://openalex.org/I141945490"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:0baa0d2ee4f64b5fbc9521dbc6f38328","is_oa":false,"landing_page_url":"https://doaj.org/article/0baa0d2ee4f64b5fbc9521dbc6f38328","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 243 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2408605","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2408605","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-243","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-243","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-243","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.7099999785423279,"display_name":"Life below water"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320319931","display_name":"Canadian Breast Cancer Research Alliance","ror":"https://ror.org/022mxs943"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337365","display_name":"National Institute of Dental and Craniofacial Research","ror":"https://ror.org/004a2wv92"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2035486209.pdf","grobid_xml":"https://content.openalex.org/works/W2035486209.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1605701032","https://openalex.org/W1853214607","https://openalex.org/W1890977437","https://openalex.org/W2002079712","https://openalex.org/W2023369015","https://openalex.org/W2028351797","https://openalex.org/W2057217795","https://openalex.org/W2112192177","https://openalex.org/W2113574907","https://openalex.org/W2119886845","https://openalex.org/W2124435172","https://openalex.org/W2127710810","https://openalex.org/W2133360710","https://openalex.org/W2134672574","https://openalex.org/W2140494954","https://openalex.org/W2151820600","https://openalex.org/W2158435278"],"related_works":["https://openalex.org/W3118014344","https://openalex.org/W2160911017","https://openalex.org/W2763474833","https://openalex.org/W2387464095","https://openalex.org/W2507940864","https://openalex.org/W1526237818","https://openalex.org/W4281746656","https://openalex.org/W2005336569","https://openalex.org/W2157937412","https://openalex.org/W2014477412"],"abstract_inverted_index":{"BACKGROUND:":[0],"Recent":[1],"advances":[2],"in":[3,23,51,108,137],"global":[4],"genomic":[5,19,77,92,96,112],"profiling":[6],"methodologies":[7],"have":[8,73,101],"enabled":[9],"multi-dimensional":[10],"characterization":[11],"of":[12,17,29,61,118,171],"biological":[13],"systems.":[14],"Complete":[15],"analysis":[16,60,78,136,170],"these":[18],"profiles":[20,28,143],"require":[21],"an":[22,75],"depth":[24],"look":[25],"at":[26],"parallel":[27,59],"segmental":[30],"DNA":[31,35],"copy":[32,158],"number":[33,159],"status,":[34],"methylation":[36],"state,":[37],"single":[38,129],"nucleotide":[39],"polymorphisms,":[40],"as":[41,43],"well":[42],"gene":[44,152],"expression":[45],"profiles.":[46],"Due":[47],"to":[48,57,87,104,141],"the":[49,102,121,168],"differences":[50],"data":[52,119],"types":[53],"it":[54],"is":[55,163],"difficult":[56],"conduct":[58],"multiple":[62,95,132,176],"datasets":[63,93,107],"from":[64,144],"diverse":[65,172],"platforms.":[66],"RESULTS:":[67],"To":[68],"address":[69],"this":[70],"issue,":[71],"we":[72],"developed":[74],"integrative":[76,169],"platform":[79,166],"MD-SeeGH,":[80,99],"a":[81,115,164],"software":[82],"tool":[83],"that":[84],"allows":[85,139],"users":[86,100,140],"rapidly":[88],"and":[89,124,157,179],"directly":[90],"analyze":[91],"spanning":[94],"experiments.":[97,133],"With":[98],"flexibility":[103],"easily":[105],"update":[106],"accordance":[109],"with":[110],"new":[111,165],"builds,":[113],"make":[114],"quality":[116],"assessment":[117],"using":[120],"filtering":[122],"features,":[123],"identify":[125],"genetic":[126],"alterations":[127],"within":[128],"or":[130],"across":[131],"Multiple":[134],"sample":[135],"MD-SeeGH":[138,162],"compare":[142],"many":[145],"experiments":[146],"alongside":[147],"tracks":[148],"containing":[149],"detailed":[150],"localized":[151],"information,":[153],"microRNA,":[154],"CpG":[155],"islands,":[156],"variations.":[160],"CONCLUSION:":[161],"for":[167],"microarray":[173],"data,":[174],"facilitating":[175],"profile":[177],"analyses":[178],"group":[180],"comparisons.":[181]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}