{"id":"https://openalex.org/W2036935277","doi":"https://doi.org/10.1186/1471-2105-9-207","title":"Extraction of semantic biomedical relations from text using conditional random fields","display_name":"Extraction of semantic biomedical relations from text using conditional random fields","publication_year":2008,"publication_date":"2008-04-23","ids":{"openalex":"https://openalex.org/W2036935277","doi":"https://doi.org/10.1186/1471-2105-9-207","mag":"2036935277","pmid":"https://pubmed.ncbi.nlm.nih.gov/18433469"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-207","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-207","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-207","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-207","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082847743","display_name":"Markus Bundschus","orcid":"https://orcid.org/0009-0002-5861-2758"},"institutions":[{"id":"https://openalex.org/I1325886976","display_name":"Siemens (Germany)","ror":"https://ror.org/059mq0909","country_code":"DE","type":"company","lineage":["https://openalex.org/I1325886976"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Markus Bundschus","raw_affiliation_strings":["Siemens AG, Corporate Technology, Information and Communications, Otto-Hahn-Ring 6, 81739 Munich, Germany. bundschu@dbs.ifi.lmu.de","Institute for Computer Science, Ludwig-Maximilians-University Munich, Munich, Germany","Information and Communications, Siemens AG, Corporate Technology, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Siemens AG, Corporate Technology, Information and Communications, Otto-Hahn-Ring 6, 81739 Munich, Germany. bundschu@dbs.ifi.lmu.de","institution_ids":["https://openalex.org/I1325886976"]},{"raw_affiliation_string":"Institute for Computer Science, Ludwig-Maximilians-University Munich, Munich, Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Information and Communications, Siemens AG, Corporate Technology, Munich, Germany","institution_ids":["https://openalex.org/I1325886976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025212548","display_name":"Mathaeus Dejori","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137693","display_name":"Siemens (United States)","ror":"https://ror.org/04axb7e79","country_code":"US","type":"company","lineage":["https://openalex.org/I1325886976","https://openalex.org/I4210137693"]},{"id":"https://openalex.org/I1325886976","display_name":"Siemens (Germany)","ror":"https://ror.org/059mq0909","country_code":"DE","type":"company","lineage":["https://openalex.org/I1325886976"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Mathaeus Dejori","raw_affiliation_strings":["Information and Communications, Siemens AG, Corporate Technology, Otto-Hahn-Ring 6, 81739, Munich, Germany","Integrated Data Systems Department, Siemens Corporate Research, 755 College Road East, Princeton, New Jersey, 08540, USA","Integrated Data Systems Department, Siemens Corporate Research, Princeton, USA","Information and Communications, Siemens AG, Corporate Technology, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Information and Communications, Siemens AG, Corporate Technology, Otto-Hahn-Ring 6, 81739, Munich, Germany","institution_ids":["https://openalex.org/I1325886976"]},{"raw_affiliation_string":"Integrated Data Systems Department, Siemens Corporate Research, 755 College Road East, Princeton, New Jersey, 08540, USA","institution_ids":["https://openalex.org/I4210137693"]},{"raw_affiliation_string":"Integrated Data Systems Department, Siemens Corporate Research, Princeton, USA","institution_ids":["https://openalex.org/I4210137693"]},{"raw_affiliation_string":"Information and Communications, Siemens AG, Corporate Technology, Munich, Germany","institution_ids":["https://openalex.org/I1325886976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022342377","display_name":"M. Stetter","orcid":"https://orcid.org/0000-0003-4922-3099"},"institutions":[{"id":"https://openalex.org/I1325886976","display_name":"Siemens (Germany)","ror":"https://ror.org/059mq0909","country_code":"DE","type":"company","lineage":["https://openalex.org/I1325886976"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Stetter","raw_affiliation_strings":["Information and Communications, Siemens AG, Corporate Technology, Otto-Hahn-Ring 6, 81739, Munich, Germany","Information and Communications, Siemens AG, Corporate Technology, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Information and Communications, Siemens AG, Corporate Technology, Otto-Hahn-Ring 6, 81739, Munich, Germany","institution_ids":["https://openalex.org/I1325886976"]},{"raw_affiliation_string":"Information and Communications, Siemens AG, Corporate Technology, Munich, Germany","institution_ids":["https://openalex.org/I1325886976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074808403","display_name":"Volker Tresp","orcid":"https://orcid.org/0000-0001-9428-3686"},"institutions":[{"id":"https://openalex.org/I1325886976","display_name":"Siemens (Germany)","ror":"https://ror.org/059mq0909","country_code":"DE","type":"company","lineage":["https://openalex.org/I1325886976"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Volker Tresp","raw_affiliation_strings":["Information and Communications, Siemens AG, Corporate Technology, Otto-Hahn-Ring 6, 81739, Munich, Germany","Information and Communications, Siemens AG, Corporate Technology, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Information and Communications, Siemens AG, Corporate Technology, Otto-Hahn-Ring 6, 81739, Munich, Germany","institution_ids":["https://openalex.org/I1325886976"]},{"raw_affiliation_string":"Information and Communications, Siemens AG, Corporate Technology, Munich, Germany","institution_ids":["https://openalex.org/I1325886976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109848174","display_name":"Hans\u2010Peter Kriegel","orcid":null},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans-Peter Kriegel","raw_affiliation_strings":["Institute for Computer Science, Ludwig-Maximilians-University Munich, Oettingenstr. 67, 80538, Munich, Germany","Institute for Computer Science, Ludwig-Maximilians-University Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Computer Science, Ludwig-Maximilians-University Munich, Oettingenstr. 67, 80538, Munich, Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Institute for Computer Science, Ludwig-Maximilians-University Munich, Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5082847743"],"corresponding_institution_ids":["https://openalex.org/I1325886976","https://openalex.org/I8204097"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":7.1612,"has_fulltext":true,"cited_by_count":221,"citation_normalized_percentile":{"value":0.97798149,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"9","issue":"1","first_page":"207","last_page":"207"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.6828457713127136},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6324621438980103},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5106633305549622},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.4480201303958893},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44024550914764404},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40850257873535156},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3827414810657501},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33828866481781006},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23460128903388977},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10835248231887817},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.08931130170822144}],"concepts":[{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.6828457713127136},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6324621438980103},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5106633305549622},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.4480201303958893},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44024550914764404},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40850257873535156},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3827414810657501},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33828866481781006},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23460128903388977},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10835248231887817},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.08931130170822144}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013812","descriptor_name":"Therapeutics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D013812","descriptor_name":"Therapeutics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D013812","descriptor_name":"Therapeutics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-9-207","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-207","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-207","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18433469","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18433469","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:7bf64bd573e747c59ffc0876f90bf25f","is_oa":true,"landing_page_url":"https://doaj.org/article/7bf64bd573e747c59ffc0876f90bf25f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 207 (2008)","raw_type":"article"},{"id":"pmh:oai:epub.ub.uni-muenchen.de:23659","is_oa":false,"landing_page_url":"https://epub.ub.uni-muenchen.de/23659/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401845","display_name":"Open access LMU (Ludwid Maxmilian's Universitat Munchen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I8204097","host_organization_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","host_organization_lineage":["https://openalex.org/I8204097"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"doc-type:article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2386138","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2386138","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-207","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-207","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-207","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323390","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2036935277.pdf","grobid_xml":"https://content.openalex.org/works/W2036935277.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W91108901","https://openalex.org/W626058384","https://openalex.org/W1484777458","https://openalex.org/W1529355025","https://openalex.org/W1550258693","https://openalex.org/W1552716293","https://openalex.org/W1600005654","https://openalex.org/W1608124137","https://openalex.org/W1661207966","https://openalex.org/W1747861911","https://openalex.org/W1766290689","https://openalex.org/W1954715867","https://openalex.org/W1986398135","https://openalex.org/W1986967481","https://openalex.org/W1990343723","https://openalex.org/W1996143460","https://openalex.org/W2023736097","https://openalex.org/W2023940858","https://openalex.org/W2025083459","https://openalex.org/W2044420612","https://openalex.org/W2079031049","https://openalex.org/W2083045667","https://openalex.org/W2089933214","https://openalex.org/W2102281458","https://openalex.org/W2107580398","https://openalex.org/W2109070394","https://openalex.org/W2110279753","https://openalex.org/W2118029084","https://openalex.org/W2132972409","https://openalex.org/W2137881949","https://openalex.org/W2144001613","https://openalex.org/W2146191280","https://openalex.org/W2147880316","https://openalex.org/W2151296343","https://openalex.org/W2152698860","https://openalex.org/W2153635508","https://openalex.org/W2157735936","https://openalex.org/W2159583324","https://openalex.org/W2163362093","https://openalex.org/W2163480486","https://openalex.org/W2165428180","https://openalex.org/W2166474856","https://openalex.org/W2482178627","https://openalex.org/W3120421331","https://openalex.org/W4213060373","https://openalex.org/W4237381349","https://openalex.org/W4248184695","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2356597680","https://openalex.org/W2114846443","https://openalex.org/W3102147106","https://openalex.org/W2093471820","https://openalex.org/W2347460059","https://openalex.org/W50079190","https://openalex.org/W2111726165","https://openalex.org/W3136048405","https://openalex.org/W2078793151","https://openalex.org/W2886890203"],"abstract_inverted_index":{"We":[0],"extend":[1],"the":[2,9,20,67,84,100],"framework":[3],"of":[4,11,31,86,88],"Conditional":[5],"Random":[6],"Fields":[7],"towards":[8],"annotation":[10],"semantic":[12],"relations":[13],"from":[14],"text":[15,76],"and":[16,34,49,58],"apply":[17],"it":[18],"to":[19,41,53],"biomedical":[21],"domain.":[22],"Our":[23],"approach":[24],"is":[25,39,46,80],"based":[26],"on":[27,82],"a":[28,36,71],"rich":[29,72],"set":[30],"textual":[32],"features":[33],"achieves":[35],"performance":[37],"that":[38,66],"competitive":[40],"leading":[42],"approaches.":[43],"The":[44,61],"model":[45],"quite":[47],"general":[48],"can":[50],"be":[51],"extended":[52],"handle":[54],"arbitrary":[55],"biological":[56],"entities":[57,89],"relation":[59,101],"types.":[60],"resulting":[62],"gene-disease":[63],"network":[64],"shows":[65],"GeneRIF":[68],"database":[69],"provides":[70],"knowledge":[73],"source":[74],"for":[75],"mining.":[77],"Current":[78],"work":[79],"focused":[81],"improving":[83],"accuracy":[85],"detection":[87],"as":[90,92],"well":[91],"entity":[93],"boundaries,":[94],"which":[95],"will":[96],"also":[97],"greatly":[98],"improve":[99],"extraction":[102],"performance.":[103]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":17},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":19}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
