{"id":"https://openalex.org/W2090982348","doi":"https://doi.org/10.1186/1471-2105-9-193","title":"Natural Language Processing in aid of FlyBase curators","display_name":"Natural Language Processing in aid of FlyBase curators","publication_year":2008,"publication_date":"2008-04-14","ids":{"openalex":"https://openalex.org/W2090982348","doi":"https://doi.org/10.1186/1471-2105-9-193","mag":"2090982348","pmid":"https://pubmed.ncbi.nlm.nih.gov/18410678"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-193","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-193","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-193","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-193","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064525301","display_name":"Nikiforos Karamanis","orcid":"https://orcid.org/0000-0001-9017-8694"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Nikiforos Karamanis","raw_affiliation_strings":["Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK. nikiforos.karamanis@cl.cam.ac.uk","Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK. nikiforos.karamanis@cl.cam.ac.uk","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023433896","display_name":"Ruth L. Seal","orcid":"https://orcid.org/0000-0002-7545-6817"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ruth Seal","raw_affiliation_strings":["Department of Genetics, University of Cambridge, Downing Site, Cambridge, CB2 3EH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Downing Site, Cambridge, CB2 3EH, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088357141","display_name":"Ian Lewin","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ian Lewin","raw_affiliation_strings":["Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042870272","display_name":"Peter McQuilton","orcid":"https://orcid.org/0000-0003-2687-1982"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter McQuilton","raw_affiliation_strings":["Department of Genetics, University of Cambridge, Downing Site, Cambridge, CB2 3EH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Downing Site, Cambridge, CB2 3EH, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067943980","display_name":"Andreas Vlachos","orcid":"https://orcid.org/0000-0003-2123-5071"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andreas Vlachos","raw_affiliation_strings":["Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037446132","display_name":"Caroline Gasperin","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Caroline Gasperin","raw_affiliation_strings":["Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075192784","display_name":"Rachel Drysdale","orcid":"https://orcid.org/0000-0003-3037-0216"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rachel Drysdale","raw_affiliation_strings":["Department of Genetics, University of Cambridge, Downing Site, Cambridge, CB2 3EH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Downing Site, Cambridge, CB2 3EH, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030189297","display_name":"Ted Briscoe","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ted Briscoe","raw_affiliation_strings":["Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Laboratory, University of Cambridge, William Gates Building, Cambridge, CB3 0FD, UK","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5064525301"],"corresponding_institution_ids":["https://openalex.org/I241749"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.6641,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.90098654,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"193","last_page":"193"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.85589998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.85589998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.07930000126361847,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.009100000374019146,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7758417129516602},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7290394306182861},{"id":"https://openalex.org/keywords/anaphora","display_name":"Anaphora (linguistics)","score":0.5200978517532349},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4841202199459076},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4709870517253876},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4548724889755249},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.43437671661376953},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4206851124763489},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3767086863517761},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34404948353767395},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.3330240845680237},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3204708397388458}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7758417129516602},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7290394306182861},{"id":"https://openalex.org/C2781449363","wikidata":"https://www.wikidata.org/wiki/Q156751","display_name":"Anaphora (linguistics)","level":3,"score":0.5200978517532349},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4841202199459076},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4709870517253876},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4548724889755249},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.43437671661376953},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4206851124763489},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3767086863517761},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34404948353767395},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.3330240845680237},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3204708397388458},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-9-193","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-193","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-193","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18410678","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18410678","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:108784","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:d3b6361680f14e75835a66c15aa244e2","is_oa":false,"landing_page_url":"https://doaj.org/article/d3b6361680f14e75835a66c15aa244e2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 193 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2375127","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2375127","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/237975","is_oa":true,"landing_page_url":"http://www.dspace.cam.ac.uk/handle/1810/237975","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-193","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-193","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-193","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.8100000023841858}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2090982348.pdf","grobid_xml":"https://content.openalex.org/works/W2090982348.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W49810510","https://openalex.org/W806969531","https://openalex.org/W1526426957","https://openalex.org/W1553529581","https://openalex.org/W1566012138","https://openalex.org/W1969887143","https://openalex.org/W1993180856","https://openalex.org/W2002768443","https://openalex.org/W2009433284","https://openalex.org/W2013061117","https://openalex.org/W2014296507","https://openalex.org/W2044514479","https://openalex.org/W2053673723","https://openalex.org/W2089988218","https://openalex.org/W2097106271","https://openalex.org/W2102672399","https://openalex.org/W2113040794","https://openalex.org/W2129227538","https://openalex.org/W2133993935","https://openalex.org/W2137209653","https://openalex.org/W2159335058","https://openalex.org/W2168905447","https://openalex.org/W2798214469","https://openalex.org/W3143962748","https://openalex.org/W4246222370","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1601379694","https://openalex.org/W1966254356","https://openalex.org/W1528321095","https://openalex.org/W2141510042","https://openalex.org/W2091943195","https://openalex.org/W4248392126","https://openalex.org/W2034277978","https://openalex.org/W2394206374","https://openalex.org/W2250257506","https://openalex.org/W2021698997"],"abstract_inverted_index":{"BACKGROUND:":[0],"Despite":[1],"increasing":[2],"interest":[3],"in":[4,43,77,145,150,159],"applying":[5],"Natural":[6],"Language":[7],"Processing":[8],"(NLP)":[9],"to":[10,39,115,123,130,180],"biomedical":[11],"text,":[12],"whether":[13],"this":[14,51],"technology":[15],"can":[16,171],"facilitate":[17],"tasks":[18,162],"such":[19,163],"as":[20,164],"database":[21],"curation":[22,182],"remains":[23],"unclear.":[24],"RESULTS:":[25],"PaperBrowser":[26,96,127,179],"is":[27,128],"the":[28,41,62,98,116,124,142,151,175],"first":[29,54],"NLP-powered":[30],"interface":[31],"that":[32,95,119,156],"was":[33,120],"developed":[34],"under":[35],"a":[36,78,82],"user-centered":[37],"approach":[38],"improve":[40],"way":[42],"which":[44,146],"FlyBase":[45],"curators":[46,58,132],"navigate":[47],"an":[48],"article.":[49,152],"In":[50],"paper,":[52],"we":[53,69,72],"discuss":[55],"how":[56,71],"observing":[57],"at":[59],"work":[60],"informed":[61],"design":[63],"and":[64,86,106,168],"evaluation":[65,87],"of":[66,89,100,141,178],"PaperBrowser.":[67],"Then,":[68],"present":[70],"appraise":[73],"PaperBrowser's":[74],"navigational":[75,109,117,135,176],"functionalities":[76,177],"user-based":[79],"study":[80],"using":[81],"text":[83,149],"highlighting":[84,104],"task":[85],"criteria":[88],"Human-Computer":[90],"Interaction.":[91],"Our":[92],"results":[93],"show":[94,155],"reduces":[97],"amount":[99],"interactions":[101],"between":[102],"two":[103],"events":[105],"therefore":[107],"improves":[108],"efficiency":[110],"by":[111,137],"about":[112],"58%":[113],"compared":[114],"mechanism":[118],"previously":[121],"available":[122],"curators.":[125],"Moreover,":[126],"shown":[129],"provide":[131],"with":[133,174],"enhanced":[134],"utility":[136],"over":[138],"74%":[139],"irrespective":[140],"different":[143],"ways":[144],"they":[147],"highlight":[148],"CONCLUSION:":[153],"We":[154],"state-of-the-art":[157],"performance":[158],"certain":[160],"NLP":[161],"Named":[165],"Entity":[166],"Recognition":[167],"Anaphora":[169],"Resolution":[170],"be":[172],"combined":[173],"support":[181],"quite":[183],"successfully.":[184]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":9}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
