{"id":"https://openalex.org/W2124007391","doi":"https://doi.org/10.1186/1471-2105-8-s7-s13","title":"Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks","display_name":"Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks","publication_year":2007,"publication_date":"2007-11-01","ids":{"openalex":"https://openalex.org/W2124007391","doi":"https://doi.org/10.1186/1471-2105-8-s7-s13","mag":"2124007391","pmid":"https://pubmed.ncbi.nlm.nih.gov/18047712"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-s7-s13","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-s7-s13","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S7-S13","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S7-S13","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100432772","display_name":"Peng Li","orcid":"https://orcid.org/0000-0003-2030-1807"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peng Li","raw_affiliation_strings":["School of Computing, University of Southern Mississippi, Hattiesburg, MS 39406, USA. peng.li@usm.edu","School of Computing, University of Southern Mississippi, Hattiesburg, MS, 39406, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, Hattiesburg, MS 39406, USA. peng.li@usm.edu","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, Hattiesburg, MS, 39406, USA","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100603445","display_name":"Chaoyang Zhang","orcid":"https://orcid.org/0000-0002-1221-0406"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chaoyang Zhang","raw_affiliation_strings":["School of Computing, University of Southern Mississippi, Hattiesburg, MS, 39406, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, Hattiesburg, MS, 39406, USA","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075371599","display_name":"Edward J. Perkins","orcid":"https://orcid.org/0000-0003-1693-7714"},"institutions":[{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"government","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward J Perkins","raw_affiliation_strings":["Environmental Laboratory, U.S. Army Engineer Research and Development Center, 3909 Halls Ferry Rd, Vicksburg, MS, 39180, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Laboratory, U.S. Army Engineer Research and Development Center, 3909 Halls Ferry Rd, Vicksburg, MS, 39180, USA","institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I87303767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019029265","display_name":"Ping Gong","orcid":"https://orcid.org/0000-0001-9910-7948"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ping Gong","raw_affiliation_strings":["SpecPro Inc., 3909 Halls Ferry Rd, Vicksburg, MS, 39180, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SpecPro Inc., 3909 Halls Ferry Rd, Vicksburg, MS, 39180, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042435594","display_name":"Youping Deng","orcid":"https://orcid.org/0000-0002-5951-8213"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Youping Deng","raw_affiliation_strings":["Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS, 39406, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS, 39406, USA","institution_ids":["https://openalex.org/I44854399"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042435594","https://openalex.org/A5100603445"],"corresponding_institution_ids":["https://openalex.org/I44854399"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":3.0179,"has_fulltext":true,"cited_by_count":91,"citation_normalized_percentile":{"value":0.91989464,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"8","issue":"S7","first_page":"S13","last_page":"S13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9667999744415283,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9667999744415283,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.014499999582767487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.006399999838322401,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.857001543045044},{"id":"https://openalex.org/keywords/dynamic-bayesian-network","display_name":"Dynamic Bayesian network","score":0.7914322018623352},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6574385166168213},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.6410011053085327},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.6251194477081299},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.54600590467453},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5311523675918579},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5210556387901306},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5010273456573486},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4569530785083771},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.45464572310447693},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44090649485588074},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37843307852745056},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2919482886791229},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.264147013425827},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.26331812143325806},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2172413468360901},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2049727439880371},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.14176499843597412}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.857001543045044},{"id":"https://openalex.org/C82142266","wikidata":"https://www.wikidata.org/wiki/Q3456604","display_name":"Dynamic Bayesian network","level":3,"score":0.7914322018623352},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6574385166168213},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.6410011053085327},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.6251194477081299},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.54600590467453},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5311523675918579},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5210556387901306},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5010273456573486},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4569530785083771},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.45464572310447693},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44090649485588074},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37843307852745056},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2919482886791229},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.264147013425827},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.26331812143325806},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2172413468360901},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2049727439880371},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.14176499843597412},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-8-s7-s13","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-s7-s13","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S7-S13","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18047712","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18047712","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:aquila.usm.edu:fac_pubs-2815","is_oa":false,"landing_page_url":"https://aquila.usm.edu/fac_pubs/1816","pdf_url":null,"source":{"id":"https://openalex.org/S4306402529","display_name":"Aquila Digital Community (University of Southern Mississippi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I44854399","host_organization_name":"University of Southern Mississippi","host_organization_lineage":["https://openalex.org/I44854399"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:bb6a0beb77d445adb6bf0500a33aaa37","is_oa":false,"landing_page_url":"https://doaj.org/article/bb6a0beb77d445adb6bf0500a33aaa37","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss Suppl 7, p S13 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2099481","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2099481","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-s7-s13","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-s7-s13","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S7-S13","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3515240650","display_name":null,"funder_award_id":"2P20RR016476-04","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G490193715","display_name":null,"funder_award_id":"P20 RR016476","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320337538","display_name":"U.S. Army Corps of Engineers","ror":"https://ror.org/05w4e8v21"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124007391.pdf","grobid_xml":"https://content.openalex.org/works/W2124007391.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W89551800","https://openalex.org/W1481919380","https://openalex.org/W1527441981","https://openalex.org/W1541161193","https://openalex.org/W1600339875","https://openalex.org/W1626295059","https://openalex.org/W1639681538","https://openalex.org/W1896341954","https://openalex.org/W1971224531","https://openalex.org/W1981276685","https://openalex.org/W2015722366","https://openalex.org/W2026368892","https://openalex.org/W2030387392","https://openalex.org/W2031369606","https://openalex.org/W2040575507","https://openalex.org/W2063389953","https://openalex.org/W2079829409","https://openalex.org/W2082982706","https://openalex.org/W2090554117","https://openalex.org/W2098899472","https://openalex.org/W2104315543","https://openalex.org/W2105581244","https://openalex.org/W2105637806","https://openalex.org/W2119218276","https://openalex.org/W2130721915","https://openalex.org/W2134978629","https://openalex.org/W2136988691","https://openalex.org/W2142634942","https://openalex.org/W2151098983","https://openalex.org/W2160533336","https://openalex.org/W2161511352","https://openalex.org/W2168175751","https://openalex.org/W2168399023","https://openalex.org/W2170112109","https://openalex.org/W2990138404","https://openalex.org/W3154566661"],"related_works":["https://openalex.org/W2544242547","https://openalex.org/W2119218276","https://openalex.org/W2369018153","https://openalex.org/W2530648058","https://openalex.org/W1422717320","https://openalex.org/W1604786655","https://openalex.org/W2402814600","https://openalex.org/W2128085946","https://openalex.org/W2063978705","https://openalex.org/W2156091616"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,148,163,185],"regulation":[2],"of":[3,16,35,44,70,81,127,143,167,178,187,195,201],"gene":[4,9,48,59,95,123,131,160,202,211],"expression":[5],"is":[6,38,137,180,190],"achieved":[7],"through":[8],"regulatory":[10,49,60,96,161],"networks":[11,61],"(GRNs)":[12],"in":[13,25,46,79,157,165],"which":[14],"collections":[15],"genes":[17,45,179,197],"interact":[18],"with":[19,62],"one":[20],"another":[21],"and":[22,77,83,102,130,169,198,213],"other":[23],"substances":[24],"a":[26,47,110,121,175],"cell.":[27],"In":[28,65,86,204],"order":[29,66],"to":[30,40,67,119,139],"understand":[31],"the":[32,42,115,134,141,159,193],"underlying":[33],"function":[34],"organisms,":[36],"it":[37],"necessary":[39],"study":[41],"behavior":[43],"network":[50,100,105],"context.":[51],"Several":[52],"computational":[53,91],"approaches":[54,73,92,153,189],"are":[55,107],"available":[56],"for":[57,93,182],"modeling":[58,69,94,158],"different":[63],"datasets.":[64],"optimize":[68],"GRN,":[71],"these":[72,144],"must":[74],"be":[75,172],"compared":[76,108],"evaluated":[78],"terms":[80,166],"accuracy":[82,164,186],"efficiency.":[84],"RESULTS:":[85],"this":[87],"paper,":[88],"two":[89,145],"important":[90],"networks,":[97],"probabilistic":[98],"Boolean":[99],"methods":[101],"dynamic":[103],"Bayesian":[104],"methods,":[106],"using":[109],"biological":[111],"time-series":[112],"dataset":[113,136],"from":[114,133],"Drosophila":[116,122],"Interaction":[117],"Database":[118],"construct":[120],"network.":[124],"A":[125],"subset":[126,177],"time":[128,199],"points":[129,200],"samples":[132],"whole":[135],"used":[138],"evaluate":[140],"performance":[142,156],"approaches.":[146],"CONCLUSION:":[147],"comparison":[149],"indicates":[150],"that":[151],"both":[152,188],"had":[154],"good":[155],"networks.":[162],"recall":[168,216],"precision":[170],"can":[171],"improved":[173],"if":[174],"smaller":[176],"selected":[181,196],"inferring":[183],"GRNs.":[184],"dependent":[191],"upon":[192],"number":[194],"samples.":[203],"all":[205],"tested":[206],"cases,":[207],"DBN":[208],"identified":[209],"more":[210],"interactions":[212],"gave":[214],"better":[215],"than":[217],"PBN.":[218]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
