{"id":"https://openalex.org/W2155637788","doi":"https://doi.org/10.1186/1471-2105-8-s2-s1","title":"Probabilistic modeling and machine learning in structural and systems biology","display_name":"Probabilistic modeling and machine learning in structural and systems biology","publication_year":2007,"publication_date":"2007-05-01","ids":{"openalex":"https://openalex.org/W2155637788","doi":"https://doi.org/10.1186/1471-2105-8-s2-s1","mag":"2155637788"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-s2-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-s2-s1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S2-S1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S2-S1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018305257","display_name":"Samuel Kaski","orcid":"https://orcid.org/0000-0003-1925-9154"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Samuel Kaski","raw_affiliation_strings":["Adaptive Informatics Research Centre and Helsinki Institute for Information Technology, Laboratory of Computer and Information Science, Helsinki University of Technology, TKK, P.O. Box 5400, FI-02015, Finland"],"affiliations":[{"raw_affiliation_string":"Adaptive Informatics Research Centre and Helsinki Institute for Information Technology, Laboratory of Computer and Information Science, Helsinki University of Technology, TKK, P.O. Box 5400, FI-02015, Finland","institution_ids":["https://openalex.org/I32943570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091883185","display_name":"Juho Rousu","orcid":"https://orcid.org/0000-0002-0705-4314"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Juho Rousu","raw_affiliation_strings":["Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, P.O. Box 68, FI-00014, Finland","University of Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, P.O. Box 68, FI-00014, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058284151","display_name":"Esko Ukkonen","orcid":"https://orcid.org/0000-0002-5978-1505"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Esko Ukkonen","raw_affiliation_strings":["Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, P.O. Box 68, FI-00014, Finland","University of Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Helsinki Institute for Information Technology, Department of Computer Science, University of Helsinki, P.O. Box 68, FI-00014, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5018305257"],"corresponding_institution_ids":["https://openalex.org/I32943570"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6698,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.6940381,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"8","issue":"S2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9778000116348267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.7497249841690063},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5571390390396118},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5491889715194702},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.4785937964916229},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.456490695476532},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4562044143676758},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3886531591415405},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32691410183906555},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32547512650489807}],"concepts":[{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.7497249841690063},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5571390390396118},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5491889715194702},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.4785937964916229},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.456490695476532},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4562044143676758},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3886531591415405},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32691410183906555},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32547512650489807}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1471-2105-8-s2-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-s2-s1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S2-S1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1892067","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1892067","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-s2-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-s2-s1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S2-S1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310086","display_name":"Helsingin Yliopisto","ror":"https://ror.org/040af2s02"},{"id":"https://openalex.org/F4320320337","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53"},{"id":"https://openalex.org/F4320320360","display_name":"University of Bristol","ror":"https://ror.org/0524sp257"},{"id":"https://openalex.org/F4320332564","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155637788.pdf","grobid_xml":"https://content.openalex.org/works/W2155637788.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1981727151","https://openalex.org/W1986557114","https://openalex.org/W1987939457","https://openalex.org/W2004059413","https://openalex.org/W2047043596","https://openalex.org/W2065515536","https://openalex.org/W2074888914","https://openalex.org/W2079576327","https://openalex.org/W2089062027","https://openalex.org/W2095573931","https://openalex.org/W2150936816","https://openalex.org/W3104533353"],"related_works":["https://openalex.org/W3171225007","https://openalex.org/W3088213682","https://openalex.org/W4287662420","https://openalex.org/W4284692434","https://openalex.org/W2148813253","https://openalex.org/W3119717074","https://openalex.org/W2909645158","https://openalex.org/W2615676335","https://openalex.org/W139209134","https://openalex.org/W2104464000"],"abstract_inverted_index":{"This":[0],"supplement":[1],"contains":[2],"extended":[3],"versions":[4],"of":[5,9],"a":[6],"selected":[7],"subset":[8],"papers":[10],"presented":[11],"at":[12],"the":[13],"workshop":[14],"PMSB":[15],"2007,":[16],"Probabilistic":[17],"Modeling":[18],"and":[19,24],"Machine":[20],"Learning":[21],"in":[22],"Structural":[23],"Systems":[25],"Biology,":[26],"Tuusula,":[27],"Finland,":[28],"from":[29],"June":[30],"17":[31],"to":[32],"18,":[33],"2006.":[34]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-17T09:09:15.849793","created_date":"2025-10-10T00:00:00"}
