{"id":"https://openalex.org/W1992760035","doi":"https://doi.org/10.1186/1471-2105-8-s1-s23","title":"A global gene evolution analysis on Vibrionaceae family using phylogenetic profile","display_name":"A global gene evolution analysis on Vibrionaceae family using phylogenetic profile","publication_year":2007,"publication_date":"2007-03-01","ids":{"openalex":"https://openalex.org/W1992760035","doi":"https://doi.org/10.1186/1471-2105-8-s1-s23","mag":"1992760035","pmid":"https://pubmed.ncbi.nlm.nih.gov/17430568"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-s1-s23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-s1-s23","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S1-S23","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S1-S23","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019203087","display_name":"Nicola Vitulo","orcid":"https://orcid.org/0000-0002-9571-0747"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Nicola Vitulo","raw_affiliation_strings":["CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy. nicolav@cribi.unipd.it","CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy. nicolav@cribi.unipd.it","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079774404","display_name":"Alessandro Vezzi","orcid":"https://orcid.org/0000-0002-8629-6644"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Vezzi","raw_affiliation_strings":["CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082717632","display_name":"Chiara Romualdi","orcid":"https://orcid.org/0000-0003-4792-9047"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Chiara Romualdi","raw_affiliation_strings":["CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080272730","display_name":"Stefano Campanaro","orcid":"https://orcid.org/0000-0002-9431-1648"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Campanaro","raw_affiliation_strings":["CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005828835","display_name":"Giorgio Valle","orcid":"https://orcid.org/0000-0003-4377-5685"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Giorgio Valle","raw_affiliation_strings":["CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CRIBI Biotechnology Centre, Department of Biology, University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5005828835"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.0201,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.72862263,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"8","issue":"S1","first_page":"S23","last_page":"S23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11684","display_name":"Vibrio bacteria research studies","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11684","display_name":"Vibrio bacteria research studies","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.007400000002235174,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.0044999998062849045,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8746473789215088},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8722411394119263},{"id":"https://openalex.org/keywords/orfs","display_name":"ORFS","score":0.7124031782150269},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6462140679359436},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6427918672561646},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5925498604774475},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5505360960960388},{"id":"https://openalex.org/keywords/vibrionaceae","display_name":"Vibrionaceae","score":0.5338863730430603},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.49749329686164856},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.4728318154811859},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4555434584617615},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.14679795503616333},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.07193794846534729}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8746473789215088},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8722411394119263},{"id":"https://openalex.org/C2780530800","wikidata":"https://www.wikidata.org/wiki/Q7072921","display_name":"ORFS","level":5,"score":0.7124031782150269},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6462140679359436},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6427918672561646},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5925498604774475},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5505360960960388},{"id":"https://openalex.org/C2776422119","wikidata":"https://www.wikidata.org/wiki/Q910922","display_name":"Vibrionaceae","level":3,"score":0.5338863730430603},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.49749329686164856},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.4728318154811859},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4555434584617615},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.14679795503616333},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.07193794846534729}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014737","descriptor_name":"Vibrionaceae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014737","descriptor_name":"Vibrionaceae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014737","descriptor_name":"Vibrionaceae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014737","descriptor_name":"Vibrionaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014737","descriptor_name":"Vibrionaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014737","descriptor_name":"Vibrionaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-8-s1-s23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-s1-s23","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S1-S23","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17430568","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17430568","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b1d5970ca8ae4a6cb7272a19313676ce","is_oa":false,"landing_page_url":"https://doaj.org/article/b1d5970ca8ae4a6cb7272a19313676ce","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss Suppl 1, p S23 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1885853","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1885853","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.research.unipd.it:11577/2444846","is_oa":true,"landing_page_url":"http://hdl.handle.net/11577/2444846","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-s1-s23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-s1-s23","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-S1-S23","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.8899999856948853}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1992760035.pdf","grobid_xml":"https://content.openalex.org/works/W1992760035.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W45534775","https://openalex.org/W1952540142","https://openalex.org/W1968179480","https://openalex.org/W1995445964","https://openalex.org/W2006076492","https://openalex.org/W2057885377","https://openalex.org/W2080314452","https://openalex.org/W2093290409","https://openalex.org/W2097464195","https://openalex.org/W2107247200","https://openalex.org/W2114200698","https://openalex.org/W2115542536","https://openalex.org/W2120386856","https://openalex.org/W2122735072","https://openalex.org/W2126709153","https://openalex.org/W2135083016","https://openalex.org/W2139275024","https://openalex.org/W2142736798","https://openalex.org/W2148472871","https://openalex.org/W2152612505","https://openalex.org/W2158282653","https://openalex.org/W2168147993","https://openalex.org/W2169135562","https://openalex.org/W2171512516","https://openalex.org/W2999074976","https://openalex.org/W4211043921","https://openalex.org/W4252706339"],"related_works":["https://openalex.org/W1568113763","https://openalex.org/W2086569686","https://openalex.org/W3035691570","https://openalex.org/W1986319417","https://openalex.org/W3012252241","https://openalex.org/W147961746","https://openalex.org/W25489809","https://openalex.org/W1788797176","https://openalex.org/W3212385379","https://openalex.org/W2593435846"],"abstract_inverted_index":{"BACKGROUND:":[0],"Vibrionaceae":[1,35,119],"represent":[2],"a":[3,92,197,214,306],"significant":[4],"portion":[5],"of":[6,41,47,85,91,110,136,157,165,193,217,221,235,242,253,276,314,323,333],"the":[7,39,45,56,62,83,89,108,125,163,167,171,182,187,203,239,246,273,292,312,320,331],"cultivable":[8],"heterotrophic":[9],"sea":[10],"bacteria;":[11],"they":[12],"strongly":[13],"affect":[14],"nutrient":[15],"cycling":[16],"and":[17,184,205,259],"some":[18,324],"species":[19],"are":[20,248],"devastating":[21],"pathogens.":[22],"In":[23],"this":[24,42,97,282],"work":[25],"we":[26,318],"propose":[27],"an":[28,134,327],"improved":[29],"phylogenetic":[30,51,94,151,175,335],"profile":[31,52,130,336],"analysis":[32,190,231],"on":[33,44,55,88,107,113,139,181,186,287,330],"14":[34],"genomes,":[36],"to":[37,72,101,146,170,213,338],"study":[38],"evolution":[40,289,313],"family":[43],"basis":[46,90,109,332],"gene":[48,179],"content.":[49],"The":[50,173,230],"is":[53,99,131],"based":[54,138],"observation":[57],"that":[58,208,233,264],"genes":[59,145,210,237],"involved":[60],"in":[61],"same":[63,293],"process":[64],"(e.g.":[65],"metabolic":[66],"pathway":[67],"or":[68,76],"structural":[69],"complex)":[70],"tend":[71],"be":[73],"concurrently":[74],"present":[75],"absent":[77],"within":[78,280],"different":[79],"genomes.":[80],"This":[81],"allows":[82],"prediction":[84],"hypothetical":[86,297],"functions":[87],"shared":[93],"profiles.":[95],"Moreover":[96],"approach":[98],"useful":[100],"identify":[102],"putative":[103,321],"laterally":[104],"transferred":[105],"elements":[106,266,303],"their":[111,148,284,334],"presence":[112],"distantly":[114],"phylogenetically":[115],"related":[116],"bacteria.":[117],"RESULTS:":[118],"ORFs":[120,325],"were":[121],"aligned":[122],"against":[123],"all":[124,147,158,166,202],"available":[126],"bacterial":[127],"proteomes.":[128],"Phylogenetic":[129],"defined":[132,161],"as":[133,162],"array":[135],"distances,":[137],"aminoacid":[140],"substitution":[141],"matrixes,":[142],"from":[143,154],"single":[144],"orthologues.":[149],"Final":[150],"profiles,":[152],"derived":[153],"non-redundant":[155],"list":[156],"ORFs,":[159],"was":[160],"median":[164],"profiles":[168,176,269,304],"belonging":[169],"cluster.":[172],"resulting":[174],"matrix":[177],"contains":[178],"clusters":[180,207,234],"rows":[183],"organisms":[185,204],"columns.":[188],"Cluster":[189],"identified":[191],"groups":[192],"\"core":[194],"genes\"":[195],"with":[196,301],"widespread":[198],"high":[199],"similarity":[200,337],"across":[201,272],"several":[206,296],"contain":[209],"homologous":[211],"only":[212,271],"limited":[215],"set":[216,275],"organisms.":[218],"On":[219],"each":[220],"these":[222,315],"clusters,":[223],"COG":[224],"class":[225],"enrichment":[226],"has":[227],"been":[228],"calculated.":[229],"reveals":[232],"core":[236],"have":[238,267],"highest":[240],"number":[241],"enriched":[243,249],"classes,":[244],"while":[245],"others":[247],"just":[250],"for":[251,311],"few":[252],"them":[254],"like":[255],"DNA":[256],"replication,":[257],"recombination":[258],"repair.":[260],"CONCLUSION:":[261],"We":[262],"found":[263],"mobile":[265,302],"heterogeneous":[268],"not":[270],"entire":[274],"organisms,":[277],"but":[278],"also":[279],"Vibrionaceae;":[281],"confirms":[283],"great":[285],"influence":[286],"bacteria":[288],"even":[290],"inside":[291],"family.":[294],"Furthermore,":[295],"proteins":[298],"highly":[299],"correlate":[300],"suggesting":[305],"possible":[307],"horizontal":[308],"transfer":[309],"mechanism":[310],"genes.":[316,341],"Finally,":[317],"suggested":[319],"role":[322],"having":[326],"unknown":[328],"function":[329],"well":[339],"characterized":[340]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}