{"id":"https://openalex.org/W2114997737","doi":"https://doi.org/10.1186/1471-2105-8-92","title":"Discarding duplicate ditags in LongSAGE analysis may introduce significant error","display_name":"Discarding duplicate ditags in LongSAGE analysis may introduce significant error","publication_year":2007,"publication_date":"2007-03-14","ids":{"openalex":"https://openalex.org/W2114997737","doi":"https://doi.org/10.1186/1471-2105-8-92","mag":"2114997737","pmid":"https://pubmed.ncbi.nlm.nih.gov/17359537"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-92","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-92","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-92","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-92","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000156589","display_name":"Jeppe Emmersen","orcid":"https://orcid.org/0000-0001-6244-1280"},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jeppe Emmersen","raw_affiliation_strings":["Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark. je@bio.aau.dk <je@bio.aau.dk>","Department of Biotechnology, Chemistry, and Environmental Engineering, Aalborg University, Aalborg, Denmark,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark. je@bio.aau.dk <je@bio.aau.dk>","institution_ids":["https://openalex.org/I891191580"]},{"raw_affiliation_string":"Department of Biotechnology, Chemistry, and Environmental Engineering, Aalborg University, Aalborg, Denmark,","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034937094","display_name":"A Heidenblut","orcid":null},"institutions":[{"id":"https://openalex.org/I2802742124","display_name":"John Radcliffe Hospital","ror":"https://ror.org/0080acb59","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802742124","https://openalex.org/I4210127145","https://openalex.org/I4210147381"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210112654","display_name":"Universit\u00e4tsklinikum Knappschaftskrankenhaus Bochum","ror":"https://ror.org/024j3hn90","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799784675","https://openalex.org/I4210112654"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Anna M Heidenblut","raw_affiliation_strings":["Department of Internal Medicine, Knappschaftskrankenhaus, University of Bochum, Bochum, Germany","Department of Molecular Oncology, Weatherall Institute of Molecular Medicine, Oxford University John Radcliffe Hospital, UK","Department of Molecular Oncology, Weatherall Institute of Molecular Medicine, Oxford University John Radcliffe Hospital, , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, Knappschaftskrankenhaus, University of Bochum, Bochum, Germany","institution_ids":["https://openalex.org/I4210112654"]},{"raw_affiliation_string":"Department of Molecular Oncology, Weatherall Institute of Molecular Medicine, Oxford University John Radcliffe Hospital, UK","institution_ids":["https://openalex.org/I2802742124"]},{"raw_affiliation_string":"Department of Molecular Oncology, Weatherall Institute of Molecular Medicine, Oxford University John Radcliffe Hospital, , UK","institution_ids":["https://openalex.org/I2802742124","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067739426","display_name":"Annabeth Laursen H\u00f8gh","orcid":null},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Annabeth Laursen H\u00f8gh","raw_affiliation_strings":["Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark","Department of Biotechnology, Chemistry, and Environmental Engineering, Aalborg University, Aalborg, Denmark,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]},{"raw_affiliation_string":"Department of Biotechnology, Chemistry, and Environmental Engineering, Aalborg University, Aalborg, Denmark,","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000633602","display_name":"Stephan A. Hahn","orcid":"https://orcid.org/0000-0003-0855-9741"},"institutions":[{"id":"https://openalex.org/I4210112654","display_name":"Universit\u00e4tsklinikum Knappschaftskrankenhaus Bochum","ror":"https://ror.org/024j3hn90","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799784675","https://openalex.org/I4210112654"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stephan A Hahn","raw_affiliation_strings":["Department of Internal Medicine, Knappschaftskrankenhaus, University of Bochum, Bochum, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, Knappschaftskrankenhaus, University of Bochum, Bochum, Germany","institution_ids":["https://openalex.org/I4210112654"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036518743","display_name":"Karen G. Welinder","orcid":"https://orcid.org/0000-0002-5409-0131"},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Karen G Welinder","raw_affiliation_strings":["Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark","Department of Biotechnology, Chemistry, and Environmental Engineering, Aalborg University, Aalborg, Denmark,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]},{"raw_affiliation_string":"Department of Biotechnology, Chemistry, and Environmental Engineering, Aalborg University, Aalborg, Denmark,","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056707731","display_name":"K\u00e5re Lehmann Nielsen","orcid":"https://orcid.org/0000-0002-5598-4401"},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"K\u00e5re L Nielsen","raw_affiliation_strings":["Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark","Department of Biotechnology, Chemistry, and Environmental Engineering, Aalborg University, Aalborg, Denmark,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]},{"raw_affiliation_string":"Department of Biotechnology, Chemistry, and Environmental Engineering, Aalborg University, Aalborg, Denmark,","institution_ids":["https://openalex.org/I891191580"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5056707731"],"corresponding_institution_ids":["https://openalex.org/I891191580"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0659,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.75986723,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"8","issue":"1","first_page":"92","last_page":"92"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6377999782562256,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6377999782562256,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.07349999994039536,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.0632999986410141,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5388137698173523},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5149067640304565},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5122860670089722},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2948964834213257},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24389716982841492},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07876339554786682},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.055068522691726685}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5388137698173523},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5149067640304565},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5122860670089722},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2948964834213257},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24389716982841492},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07876339554786682},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.055068522691726685}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-8-92","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-92","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-92","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17359537","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17359537","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0ff958721713403fb66ad646b41f2509","is_oa":true,"landing_page_url":"https://doaj.org/article/0ff958721713403fb66ad646b41f2509","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 92 (2007)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:1818003","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1839111","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/78318600-d31f-11db-ae4a-000ea68e967b","is_oa":false,"landing_page_url":"https://vbn.aau.dk/da/publications/78318600-d31f-11db-ae4a-000ea68e967b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401731","display_name":"VBN Forskningsportal (Aalborg Universitet)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I891191580","host_organization_name":"Aalborg University","host_organization_lineage":["https://openalex.org/I891191580"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Emmersen , J , H\u00f8gh , A L , Heidenblut , A , Hahn , S , Welinder , K G &amp; Nielsen , K L 2007 , ' Discarding duplicate ditags in LongSAGE analysis may introduce significant error ' , BMC Bioinformatics , vol. 8 , no. 92 . https://doi.org/10.1186/1471-2105-8-92","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-92","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-92","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-92","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310484","display_name":"Teknologi og Produktion, Det Frie Forskningsr\u00e5d","ror":"https://ror.org/03ge1nb22"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321409","display_name":"Aalborg Universitet","ror":"https://ror.org/04m5j1k67"},{"id":"https://openalex.org/F4320323556","display_name":"Deutsche Krebshilfe","ror":"https://ror.org/01wxdd722"},{"id":"https://openalex.org/F4320337380","display_name":"Division of Mathematical Sciences","ror":"https://ror.org/051fftw81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114997737.pdf","grobid_xml":"https://content.openalex.org/works/W2114997737.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1583052686","https://openalex.org/W1968669115","https://openalex.org/W2002982210","https://openalex.org/W2010888033","https://openalex.org/W2032349285","https://openalex.org/W2065065003","https://openalex.org/W2093886776","https://openalex.org/W2101800045","https://openalex.org/W2103417302","https://openalex.org/W2106223014","https://openalex.org/W2113059971","https://openalex.org/W2114884333","https://openalex.org/W2115439147","https://openalex.org/W2121016876","https://openalex.org/W2127230663","https://openalex.org/W2133636765","https://openalex.org/W2172052253","https://openalex.org/W4213265720","https://openalex.org/W4213387068","https://openalex.org/W4237125779"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"BACKGROUND:":[0],"During":[1],"gene":[2],"expression":[3],"analysis":[4,45,95,148,217],"by":[5,121],"Serial":[6],"Analysis":[7,69,202],"of":[8,50,62,70,80,89,106,123,135,149,165,173,203],"Gene":[9],"Expression":[10],"(SAGE),":[11],"duplicate":[12,38,91,108,126,150,175],"ditags":[13,39,109,127,151,158,176],"are":[14,23,40],"routinely":[15],"removed":[16,42,215],"from":[17,27,43,161,216],"the":[18,44,59,87,94,112,115,143,147,180,192,204],"data":[19],"analysis,":[20],"because":[21],"they":[22],"suspected":[24],"to":[25,47,57,96,132,137,154,185],"stem":[26],"artifacts":[28],"during":[29],"SAGE":[30,63,120],"library":[31,76],"construction.":[32],"As":[33],"a":[34,71,81],"consequence,":[35],"naturally":[36,124],"occurring":[37,125],"also":[41,190],"leading":[46],"an":[48,133],"error":[49,116,134],"measurement.":[51],"RESULTS:":[52],"An":[53],"algorithm":[54,144],"was":[55,152,177],"developed":[56,145],"analyze":[58],"differential":[60],"occurrence":[61],"tags":[64,166,211],"in":[65,118,140,200],"different":[66],"ditag":[67,205],"combinations.":[68],"pancreatic":[72],"acinar":[73],"cell":[74],"LongSAGE":[75,99,196],"showed":[77,101],"no":[78,102],"sign":[79],"general":[82],"amplification":[83],"bias":[84],"that":[85,159,212],"justified":[86],"removal":[88,105,122,172],"all":[90,107,174],"ditags.":[92],"Extending":[93],"10":[97],"additional":[98],"libraries":[100],"justification":[103],"for":[104,146,179,194],"either.":[110],"On":[111],"contrary,":[113],"while":[114],"introduced":[117],"original":[119],"is":[128],"insignificant,":[129],"it":[130],"leads":[131],"up":[136],"3":[138],"fold":[139],"LongSAGE.":[141],"However,":[142],"able":[153],"identify":[155,209],"individual":[156],"artifact":[157,210],"originated":[160],"rare":[162],"nucleotide":[163],"variations":[164],"and":[167,183],"vector":[168],"contamination.":[169],"CONCLUSION:":[170],"The":[171],"unfounded":[178],"datasets":[181,197],"analyzed":[182],"led":[184],"large":[186],"errors.":[187],"This":[188],"may":[189],"be":[191,214],"case":[193],"other":[195],"already":[198],"present":[199],"databases.":[201],"population,":[206],"however,":[207],"can":[208],"should":[213],"or":[218],"have":[219],"their":[220],"tag":[221],"count":[222],"adjusted.":[223]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
