{"id":"https://openalex.org/W1759289434","doi":"https://doi.org/10.1186/1471-2105-8-52","title":"PASSIM \u2013 an open source software system for managing information in biomedical studies","display_name":"PASSIM \u2013 an open source software system for managing information in biomedical studies","publication_year":2007,"publication_date":"2007-02-09","ids":{"openalex":"https://openalex.org/W1759289434","doi":"https://doi.org/10.1186/1471-2105-8-52","mag":"1759289434","pmid":"https://pubmed.ncbi.nlm.nih.gov/17291344"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-52","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-52","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-52","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-52","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035792920","display_name":"Juris V\u012bksna","orcid":"https://orcid.org/0000-0003-2283-2978"},"institutions":[{"id":"https://openalex.org/I91123046","display_name":"University of Latvia","ror":"https://ror.org/05g3mes96","country_code":"LV","type":"education","lineage":["https://openalex.org/I91123046"]}],"countries":["LV"],"is_corresponding":false,"raw_author_name":"Juris Viksna","raw_affiliation_strings":["Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia. jviksna@mii.lu.lv <jviksna@mii.lu.lv>","Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia. jviksna@mii.lu.lv <jviksna@mii.lu.lv>","institution_ids":["https://openalex.org/I91123046"]},{"raw_affiliation_string":"Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia","institution_ids":["https://openalex.org/I91123046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032271647","display_name":"Edgars Celms","orcid":"https://orcid.org/0000-0001-9608-3792"},"institutions":[{"id":"https://openalex.org/I91123046","display_name":"University of Latvia","ror":"https://ror.org/05g3mes96","country_code":"LV","type":"education","lineage":["https://openalex.org/I91123046"]}],"countries":["LV"],"is_corresponding":false,"raw_author_name":"Edgars Celms","raw_affiliation_strings":["Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia","institution_ids":["https://openalex.org/I91123046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021761619","display_name":"M\u0101rti\u0146\u0161 Opmanis","orcid":"https://orcid.org/0000-0002-2731-4873"},"institutions":[{"id":"https://openalex.org/I91123046","display_name":"University of Latvia","ror":"https://ror.org/05g3mes96","country_code":"LV","type":"education","lineage":["https://openalex.org/I91123046"]}],"countries":["LV"],"is_corresponding":false,"raw_author_name":"Martins Opmanis","raw_affiliation_strings":["Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia","institution_ids":["https://openalex.org/I91123046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060085206","display_name":"K\u0101rlis Podnieks","orcid":"https://orcid.org/0000-0002-8835-6516"},"institutions":[{"id":"https://openalex.org/I91123046","display_name":"University of Latvia","ror":"https://ror.org/05g3mes96","country_code":"LV","type":"education","lineage":["https://openalex.org/I91123046"]}],"countries":["LV"],"is_corresponding":false,"raw_author_name":"Karlis Podnieks","raw_affiliation_strings":["Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia","institution_ids":["https://openalex.org/I91123046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039679271","display_name":"P\u0113teris Ru\u010devskis","orcid":null},"institutions":[{"id":"https://openalex.org/I91123046","display_name":"University of Latvia","ror":"https://ror.org/05g3mes96","country_code":"LV","type":"education","lineage":["https://openalex.org/I91123046"]}],"countries":["LV"],"is_corresponding":false,"raw_author_name":"Peteris Rucevskis","raw_affiliation_strings":["Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia","institution_ids":["https://openalex.org/I91123046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016575320","display_name":"Andris Zarins","orcid":null},"institutions":[{"id":"https://openalex.org/I91123046","display_name":"University of Latvia","ror":"https://ror.org/05g3mes96","country_code":"LV","type":"education","lineage":["https://openalex.org/I91123046"]}],"countries":["LV"],"is_corresponding":false,"raw_author_name":"Andris Zarins","raw_affiliation_strings":["Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia","institution_ids":["https://openalex.org/I91123046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056025079","display_name":"Amy Barrett","orcid":null},"institutions":[{"id":"https://openalex.org/I2801179840","display_name":"Churchill Hospital","ror":"https://ror.org/009vheq40","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2801179840","https://openalex.org/I4210147381"]},{"id":"https://openalex.org/I4210129944","display_name":"Oxford Centre for Diabetes, Endocrinology and Metabolism","ror":"https://ror.org/03myafa32","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210129944","https://openalex.org/I4210147381"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Amy Barrett","raw_affiliation_strings":["Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Headington, Oxford, OX3 7LJ, UK","Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Headington, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Headington, Oxford, OX3 7LJ, UK","institution_ids":["https://openalex.org/I4210129944","https://openalex.org/I2801179840"]},{"raw_affiliation_string":"Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Headington, UK","institution_ids":["https://openalex.org/I4210129944","https://openalex.org/I2801179840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058933313","display_name":"Sudeshna Guha Neogi","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sudeshna Guha Neogi","raw_affiliation_strings":["European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","European Bioinformatics Institute (EMBL\u2010EBI) Hinxton UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute (EMBL\u2010EBI) Hinxton UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004813790","display_name":"Maria Krestyaninova","orcid":"https://orcid.org/0000-0002-8705-8111"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Maria Krestyaninova","raw_affiliation_strings":["European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","European Bioinformatics Institute (EMBL\u2010EBI) Hinxton UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute (EMBL\u2010EBI) Hinxton UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064948585","display_name":"Mark I. McCarthy","orcid":"https://orcid.org/0000-0002-4393-0510"},"institutions":[{"id":"https://openalex.org/I2801179840","display_name":"Churchill Hospital","ror":"https://ror.org/009vheq40","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2801179840","https://openalex.org/I4210147381"]},{"id":"https://openalex.org/I4210129944","display_name":"Oxford Centre for Diabetes, Endocrinology and Metabolism","ror":"https://ror.org/03myafa32","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210129944","https://openalex.org/I4210147381"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark I McCarthy","raw_affiliation_strings":["Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Headington, Oxford, OX3 7LJ, UK","Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Headington, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Headington, Oxford, OX3 7LJ, UK","institution_ids":["https://openalex.org/I4210129944","https://openalex.org/I2801179840"]},{"raw_affiliation_string":"Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Headington, UK","institution_ids":["https://openalex.org/I4210129944","https://openalex.org/I2801179840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081419327","display_name":"Alvis Br\u0101zma","orcid":"https://orcid.org/0000-0001-5988-7409"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alvis Brazma","raw_affiliation_strings":["European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","European Bioinformatics Institute (EMBL\u2010EBI) Hinxton UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute (EMBL\u2010EBI) Hinxton UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074485826","display_name":"U\u011fis Sarkans","orcid":"https://orcid.org/0000-0001-9227-8488"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Ugis Sarkans","raw_affiliation_strings":["European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","European Bioinformatics Institute (EMBL\u2010EBI) Hinxton UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute (EMBL\u2010EBI) Hinxton UK","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5004813790","https://openalex.org/A5074485826"],"corresponding_institution_ids":["https://openalex.org/I1303153112"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":10.7042,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.97803856,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"8","issue":"1","first_page":"52","last_page":"52"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14215","display_name":"Chemical and Environmental Engineering Research","score":0.16500000655651093,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14215","display_name":"Chemical and Environmental Engineering Research","score":0.16500000655651093,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.1347000002861023,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.08449999988079071,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6708460450172424},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6578531861305237},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5496401190757751},{"id":"https://openalex.org/keywords/management-information-systems","display_name":"Management information systems","score":0.5278297066688538},{"id":"https://openalex.org/keywords/confidentiality","display_name":"Confidentiality","score":0.4949726462364197},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.48449990153312683},{"id":"https://openalex.org/keywords/information-system","display_name":"Information system","score":0.4803718030452728},{"id":"https://openalex.org/keywords/information-management","display_name":"Information management","score":0.4691084027290344},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46591877937316895},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.43237632513046265},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4264039397239685},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.25586968660354614},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.15361154079437256},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.1492464542388916}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6708460450172424},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6578531861305237},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5496401190757751},{"id":"https://openalex.org/C29848774","wikidata":"https://www.wikidata.org/wiki/Q61905","display_name":"Management information systems","level":3,"score":0.5278297066688538},{"id":"https://openalex.org/C71745522","wikidata":"https://www.wikidata.org/wiki/Q2476929","display_name":"Confidentiality","level":2,"score":0.4949726462364197},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.48449990153312683},{"id":"https://openalex.org/C180198813","wikidata":"https://www.wikidata.org/wiki/Q121182","display_name":"Information system","level":2,"score":0.4803718030452728},{"id":"https://openalex.org/C128487930","wikidata":"https://www.wikidata.org/wiki/Q579488","display_name":"Information management","level":2,"score":0.4691084027290344},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46591877937316895},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.43237632513046265},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4264039397239685},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25586968660354614},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.15361154079437256},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.1492464542388916},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001698","descriptor_name":"Biomedical Engineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001698","descriptor_name":"Biomedical Engineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001698","descriptor_name":"Biomedical Engineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002986","descriptor_name":"Clinical Trials as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-8-52","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-52","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-52","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17291344","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17291344","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:ora.ox.ac.uk:uuid:c8cb947a-fe89-4d2e-9c22-31a9f2a9a672","is_oa":true,"landing_page_url":null,"pdf_url":"https://ora.ox.ac.uk/objects/uuid:c8cb947a-fe89-4d2e-9c22-31a9f2a9a672","source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symplectic Elements at Oxford","raw_type":"Journal article"},{"id":"pmh:oai:doaj.org/article:6e63938f4b984e83b14b2ee1f6863ee1","is_oa":true,"landing_page_url":"https://doaj.org/article/6e63938f4b984e83b14b2ee1f6863ee1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 52 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1803798","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-8-52","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-52","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-52","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-52","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G7909640787","display_name":null,"funder_award_id":"LSHG-CT-2004-512066","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1759289434.pdf","grobid_xml":"https://content.openalex.org/works/W1759289434.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1501619595","https://openalex.org/W1544923801","https://openalex.org/W1806059209","https://openalex.org/W1868489439","https://openalex.org/W1999287350","https://openalex.org/W2022381538","https://openalex.org/W2067640897","https://openalex.org/W2096910745","https://openalex.org/W2126547970","https://openalex.org/W2142960568","https://openalex.org/W2143129697","https://openalex.org/W2151166219","https://openalex.org/W2207156810","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2184817066","https://openalex.org/W2393827716","https://openalex.org/W2015072481","https://openalex.org/W2898377102","https://openalex.org/W4323971220","https://openalex.org/W2558951099","https://openalex.org/W1589449287","https://openalex.org/W585851556","https://openalex.org/W751880582","https://openalex.org/W594365804"],"abstract_inverted_index":{"BACKGROUND:":[0],"One":[1],"of":[2,6,16,40,78,115,205],"the":[3,154,197,200,203],"crucial":[4],"aspects":[5],"day-to-day":[7],"laboratory":[8,66],"information":[9,17,67,102,129,211],"management":[10,68,112],"is":[11,33,89,134,168,171],"collection,":[12],"storage":[13],"and":[14,21,30,81,100,113,117,136,138,151,160,170,177,202],"retrieval":[15,114],"about":[18],"research":[19,118,217],"subjects":[20],"biomedical":[22,42,144,213],"samples.":[23],"An":[24],"efficient":[25],"link":[26],"between":[27,199],"sample":[28,101,116,128],"data":[29],"experiment":[31],"results":[32],"absolutely":[34],"imperative":[35],"for":[36,93,98,110,142,209],"a":[37,41,70,90,107,187],"successful":[38,185],"outcome":[39],"study.":[43],"Currently":[44],"available":[45],"software":[46,207],"solutions":[47,208],"are":[48,84],"largely":[49],"limited":[50],"to":[51,69,183],"large-scale,":[52],"expensive":[53],"commercial":[54],"Laboratory":[55],"Information":[56,146],"Management":[57],"Systems":[58],"(LIMS).":[59],"Acquiring":[60],"such":[61],"LIMS":[62],"indeed":[63],"can":[64,139,147,163],"bring":[65],"higher":[71],"level,":[72],"but":[73],"often":[74],"implies":[75],"sufficient":[76],"investment":[77],"time,":[79],"effort":[80],"funds,":[82],"which":[83],"not":[85],"always":[86],"available.":[87],"There":[88],"clear":[91],"need":[92,201],"lightweight":[94,206],"open":[95],"source":[96],"systems":[97],"patient":[99],"management.":[103],"RESULTS:":[104],"We":[105],"present":[106],"web-based":[108],"tool":[109],"submission,":[111],"subject":[119],"data.":[120],"The":[121,166,193],"system":[122,167,195],"secures":[123],"confidentiality":[124],"by":[125],"separating":[126],"anonymized":[127],"from":[130],"individuals'":[131],"records.":[132],"It":[133,180],"simple":[135],"generic,":[137],"be":[140,148,164,184],"customised":[141],"various":[143],"studies.":[145],"both":[149],"entered":[150],"accessed":[152],"using":[153],"same":[155],"web":[156],"interface.":[157],"User":[158],"groups":[159],"their":[161],"privileges":[162],"defined.":[165],"open-source":[169],"supplied":[172],"with":[173],"an":[174],"on-line":[175],"tutorial":[176],"necessary":[178],"documentation.":[179],"has":[181],"proven":[182],"in":[186,212],"large":[188],"international":[189],"collaborative":[190],"project.":[191],"CONCLUSION:":[192],"presented":[194],"closes":[196],"gap":[198],"availability":[204],"managing":[210],"studies":[214],"involving":[215],"human":[216],"subjects.":[218]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
