{"id":"https://openalex.org/W1867995571","doi":"https://doi.org/10.1186/1471-2105-8-46","title":"WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences","display_name":"WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences","publication_year":2007,"publication_date":"2007-02-07","ids":{"openalex":"https://openalex.org/W1867995571","doi":"https://doi.org/10.1186/1471-2105-8-46","mag":"1867995571","pmid":"https://pubmed.ncbi.nlm.nih.gov/17286865"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-46","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-46","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-46","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-46","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067492946","display_name":"Giulio Pavesi","orcid":"https://orcid.org/0000-0001-5705-6249"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulio Pavesi","raw_affiliation_strings":["Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, Milan, Italy. giulio.pavesi@unimi.it","Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, Milan, Italy. giulio.pavesi@unimi.it","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046629951","display_name":"Federico Zambelli","orcid":"https://orcid.org/0000-0003-3487-4331"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Federico Zambelli","raw_affiliation_strings":["Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005312066","display_name":"Graziano Pesole","orcid":"https://orcid.org/0000-0003-3663-0859"},"institutions":[{"id":"https://openalex.org/I4210136872","display_name":"Tecnologie Avanzate (Italy)","ror":"https://ror.org/04kevy945","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210136872"]},{"id":"https://openalex.org/I4210124735","display_name":"Istituto per le Tecnologie Didattiche","ror":"https://ror.org/02xz4xc25","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210124735","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Graziano Pesole","raw_affiliation_strings":["Dipartimento di Biochimica e Biologia Molecolare \"E. Quagliariello\", University of Bari, Bari, Italy","Istituto Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Biochimica e Biologia Molecolare \"E. Quagliariello\", University of Bari, Bari, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Istituto Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Bari, Italy","institution_ids":["https://openalex.org/I4210124735","https://openalex.org/I4210136872"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005312066"],"corresponding_institution_ids":["https://openalex.org/I4210124735","https://openalex.org/I4210136872","https://openalex.org/I5561750"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.1435,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.86571773,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"8","issue":"1","first_page":"46","last_page":"46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conserved-sequence","display_name":"Conserved sequence","score":0.6812167167663574},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.6569366455078125},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.6332467794418335},{"id":"https://openalex.org/keywords/cis-regulatory-module","display_name":"Cis-regulatory module","score":0.6285625696182251},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6052675843238831},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6043261885643005},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.5948358178138733},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5640344619750977},{"id":"https://openalex.org/keywords/homologous-chromosome","display_name":"Homologous chromosome","score":0.5494975447654724},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5380380153656006},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5083393454551697},{"id":"https://openalex.org/keywords/regulatory-sequence","display_name":"Regulatory sequence","score":0.47070667147636414},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.32617777585983276},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2849128246307373},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12141534686088562},{"id":"https://openalex.org/keywords/base-sequence","display_name":"Base sequence","score":0.10943731665611267}],"concepts":[{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.6812167167663574},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.6569366455078125},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.6332467794418335},{"id":"https://openalex.org/C190796033","wikidata":"https://www.wikidata.org/wiki/Q1093165","display_name":"Cis-regulatory module","level":5,"score":0.6285625696182251},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6052675843238831},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6043261885643005},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.5948358178138733},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5640344619750977},{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.5494975447654724},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5380380153656006},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5083393454551697},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.47070667147636414},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.32617777585983276},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2849128246307373},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12141534686088562},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.10943731665611267}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-8-46","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-46","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-46","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17286865","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17286865","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:air.unimi.it:2434/29002","is_oa":true,"landing_page_url":"http://hdl.handle.net/2434/29002","pdf_url":"http://hdl.handle.net/2434/29002","source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:016c64d1c8a54cea8ed1baa9d80bad67","is_oa":true,"landing_page_url":"https://doaj.org/article/016c64d1c8a54cea8ed1baa9d80bad67","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 46 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1803799","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-8-46","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:ricerca.uniba.it:11586/7634","is_oa":false,"landing_page_url":"http://hdl.handle.net/11586/7634","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-46","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-46","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-46","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.7099999785423279,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1867995571.pdf","grobid_xml":"https://content.openalex.org/works/W1867995571.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1214546200","https://openalex.org/W1483073028","https://openalex.org/W1815199292","https://openalex.org/W1974614108","https://openalex.org/W1986841498","https://openalex.org/W1987187756","https://openalex.org/W1997144871","https://openalex.org/W2008900336","https://openalex.org/W2016839209","https://openalex.org/W2038607441","https://openalex.org/W2039286232","https://openalex.org/W2049114051","https://openalex.org/W2049226698","https://openalex.org/W2062109465","https://openalex.org/W2080498142","https://openalex.org/W2085442947","https://openalex.org/W2097396311","https://openalex.org/W2098001104","https://openalex.org/W2100295605","https://openalex.org/W2100990361","https://openalex.org/W2103465619","https://openalex.org/W2108595723","https://openalex.org/W2109314645","https://openalex.org/W2111538766","https://openalex.org/W2111941758","https://openalex.org/W2115761267","https://openalex.org/W2126468786","https://openalex.org/W2127164334","https://openalex.org/W2128937741","https://openalex.org/W2129061533","https://openalex.org/W2134591904","https://openalex.org/W2135030836","https://openalex.org/W2135221645","https://openalex.org/W2137502130","https://openalex.org/W2141395444","https://openalex.org/W2141408320","https://openalex.org/W2144857133","https://openalex.org/W2145191876","https://openalex.org/W2146074524","https://openalex.org/W2148056478","https://openalex.org/W2149769193","https://openalex.org/W2153024250","https://openalex.org/W2158962723","https://openalex.org/W2161390567","https://openalex.org/W2161645441","https://openalex.org/W2161874991","https://openalex.org/W2162165765","https://openalex.org/W2165380507","https://openalex.org/W2166444569","https://openalex.org/W2168786813","https://openalex.org/W2915985519","https://openalex.org/W4245023496"],"related_works":["https://openalex.org/W1970337814","https://openalex.org/W2110472417","https://openalex.org/W2117549173","https://openalex.org/W1867995571","https://openalex.org/W2167300924","https://openalex.org/W1502510273","https://openalex.org/W2072226307","https://openalex.org/W2153492159","https://openalex.org/W2103465619","https://openalex.org/W2134680153"],"abstract_inverted_index":{"Results":[0],"of":[1,14,23,52],"the":[2,6,21,34,43,53,69],"tests":[3],"show":[4,39],"how":[5,42],"algorithm":[7,44],"can":[8,45],"provide":[9],"fast":[10],"and":[11,62],"reliable":[12],"predictions":[13],"conserved":[15],"transcription":[16,22],"factor":[17],"binding":[18],"sites":[19,61],"regulating":[20],"a":[24],"gene,":[25],"with":[26],"better":[27],"performances":[28],"than":[29],"other":[30],"available":[31],"methods":[32],"for":[33],"same":[35],"task.":[36],"We":[37],"also":[38],"examples":[40],"on":[41],"be":[46],"successfully":[47],"employed":[48],"when":[49,59],"promoter":[50],"annotations":[51],"genes":[54],"investigated":[55],"are":[56,64],"missing,":[57],"or":[58],"regulatory":[60],"regions":[63],"located":[65],"far":[66],"away":[67],"from":[68],"genes.":[70]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}