{"id":"https://openalex.org/W2102384347","doi":"https://doi.org/10.1186/1471-2105-8-456","title":"The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications","display_name":"The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications","publication_year":2007,"publication_date":"2007-11-19","ids":{"openalex":"https://openalex.org/W2102384347","doi":"https://doi.org/10.1186/1471-2105-8-456","mag":"2102384347","pmid":"https://pubmed.ncbi.nlm.nih.gov/18021453"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-456","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-456","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-8-456.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-8-456.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053723733","display_name":"J Christopher Bare","orcid":"https://orcid.org/0000-0003-1006-1491"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I58610484","display_name":"Seattle University","ror":"https://ror.org/02jqc0m91","country_code":"US","type":"education","lineage":["https://openalex.org/I58610484"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J Christopher Bare","raw_affiliation_strings":["Institute for Systems Biology, 1441 N 34th Street, Seattle, WA 98103, USA. cbare@systemsbiology.org","Institute for Systems Biology, Seattle, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, 1441 N 34th Street, Seattle, WA 98103, USA. cbare@systemsbiology.org","institution_ids":["https://openalex.org/I3148997608"]},{"raw_affiliation_string":"Institute for Systems Biology, Seattle, USA#TAB#","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I58610484"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035110525","display_name":"Paul Shannon","orcid":"https://orcid.org/0000-0002-3684-4470"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I58610484","display_name":"Seattle University","ror":"https://ror.org/02jqc0m91","country_code":"US","type":"education","lineage":["https://openalex.org/I58610484"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul T Shannon","raw_affiliation_strings":["Institute for Systems Biology, 1441 N 34th Street, Seattle, WA, 98103, USA","Institute for Systems Biology, Seattle, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, 1441 N 34th Street, Seattle, WA, 98103, USA","institution_ids":["https://openalex.org/I3148997608"]},{"raw_affiliation_string":"Institute for Systems Biology, Seattle, USA#TAB#","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I58610484"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076394173","display_name":"Amy Schmid","orcid":"https://orcid.org/0000-0001-5821-8000"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I58610484","display_name":"Seattle University","ror":"https://ror.org/02jqc0m91","country_code":"US","type":"education","lineage":["https://openalex.org/I58610484"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amy K Schmid","raw_affiliation_strings":["Institute for Systems Biology, 1441 N 34th Street, Seattle, WA, 98103, USA","Institute for Systems Biology, Seattle, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, 1441 N 34th Street, Seattle, WA, 98103, USA","institution_ids":["https://openalex.org/I3148997608"]},{"raw_affiliation_string":"Institute for Systems Biology, Seattle, USA#TAB#","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I58610484"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005287667","display_name":"Nitin S. Baliga","orcid":"https://orcid.org/0000-0001-9157-5974"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]},{"id":"https://openalex.org/I4210099575","display_name":"InSysBio (Russia)","ror":"https://ror.org/011fdmv87","country_code":"RU","type":"company","lineage":["https://openalex.org/I4210099575"]}],"countries":["RU","US"],"is_corresponding":true,"raw_author_name":"Nitin S Baliga","raw_affiliation_strings":["Institute for Systems Biology, 1441 N 34th Street, Seattle, WA, 98103, USA","Institute for Systems Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, 1441 N 34th Street, Seattle, WA, 98103, USA","institution_ids":["https://openalex.org/I3148997608"]},{"raw_affiliation_string":"Institute for Systems Biology","institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I4210099575"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005287667"],"corresponding_institution_ids":["https://openalex.org/I3148997608","https://openalex.org/I4210099575"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.5316,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.89480975,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"8","issue":"1","first_page":"456","last_page":"456"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.32670000195503235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.32670000195503235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.11860000342130661,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.09309999644756317,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7545355558395386},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5824970602989197},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4770335853099823},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.47366175055503845},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44030120968818665},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4386351406574249},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3906093239784241},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3439939618110657}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7545355558395386},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5824970602989197},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4770335853099823},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.47366175055503845},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44030120968818665},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4386351406574249},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3906093239784241},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3439939618110657},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019617","descriptor_name":"Halobacterium salinarum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019617","descriptor_name":"Halobacterium salinarum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019617","descriptor_name":"Halobacterium salinarum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-8-456","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-456","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-8-456.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18021453","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18021453","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:ad959b5f65314ccdaea5b798ab26acce","is_oa":true,"landing_page_url":"https://doaj.org/article/ad959b5f65314ccdaea5b798ab26acce","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 456 (2007)","raw_type":"article"},{"id":"pmh:oai:osti.gov:1626346","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626346","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2211326","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2211326","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-456","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-456","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-8-456.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G3298729951","display_name":"Design and Implementation of Effective Solutions for Archiving and Processing Systems Biology Data:  Research Integrated with an Ongoing High School Education Program.","funder_award_id":"0640950","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4065563902","display_name":null,"funder_award_id":"P50 GM076547","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7174733736","display_name":null,"funder_award_id":"P50 GM076547","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102384347.pdf","grobid_xml":"https://content.openalex.org/works/W2102384347.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W45534775","https://openalex.org/W1497175644","https://openalex.org/W1578104218","https://openalex.org/W1597431254","https://openalex.org/W1812401750","https://openalex.org/W1977922844","https://openalex.org/W1996902131","https://openalex.org/W2019655981","https://openalex.org/W2063007776","https://openalex.org/W2090438401","https://openalex.org/W2105797070","https://openalex.org/W2120789186","https://openalex.org/W2122683221","https://openalex.org/W2123500593","https://openalex.org/W2135805255","https://openalex.org/W2137653635","https://openalex.org/W2138319812","https://openalex.org/W2147285856","https://openalex.org/W2159675211","https://openalex.org/W2168103533"],"related_works":["https://openalex.org/W2003932708","https://openalex.org/W2284877871","https://openalex.org/W2138102289","https://openalex.org/W1967424056","https://openalex.org/W868043274","https://openalex.org/W2513523087","https://openalex.org/W1187916458","https://openalex.org/W2373861055","https://openalex.org/W1559716973","https://openalex.org/W2164873654"],"abstract_inverted_index":{"BACKGROUND:":[0],"Information":[1],"resources":[2,236,266],"on":[3],"the":[4,25,60,76,94,105,121,163,184,194,204,208,243,254,283,286,290,297,300,307],"World":[5],"Wide":[6],"Web":[7],"play":[8],"an":[9,73,201,239],"indispensable":[10],"role":[11],"in":[12,189,207,213,296,312],"modern":[13],"biology.":[14],"But":[15],"integrating":[16],"data":[17,29,53,82,102,127,161,231,262,294],"from":[18,142,162,232],"multiple":[19],"sources":[20],"is":[21],"often":[22],"encumbered":[23],"by":[24,165,199,229],"need":[26],"to":[27,66,75,123,128,149,186,215,309],"reformat":[28],"files,":[30],"convert":[31],"between":[32,84,263],"naming":[33],"systems,":[34],"or":[35,171],"perform":[36],"ongoing":[37],"maintenance":[38],"of":[39,42,49,59,63,93,196,203,225,242,261,289,306],"local":[40,126,273],"copies":[41],"public":[43,234],"databases.":[44],"Opportunities":[45],"for":[46,152],"new":[47],"ways":[48],"combining":[50,230],"and":[51,87,112,134,237,257,267,303],"re-using":[52],"are":[54],"arising":[55],"as":[56],"a":[57,91,156,176],"result":[58],"increasing":[61],"use":[62,125],"web":[64,79,85,138,144,164,172,235,265,276],"protocols":[65],"transmit":[67],"structured":[68,180],"data.":[69],"RESULTS:":[70],"The":[71,248],"Firegoose,":[72],"extension":[74],"Mozilla":[77,251],"Firefox":[78,252,291],"browser,":[80],"enables":[81,258],"transfer":[83],"sites":[86,145,277],"desktop":[88,116,150,268,316],"tools.":[89,118,317],"As":[90],"component":[92],"Gaggle":[95,185,255],"integration":[96,295],"framework,":[97],"Firegoose":[98,119,159,249],"can":[99,146,278],"also":[100],"exchange":[101],"with":[103,155,183,219,314],"Cytoscape,":[104],"R":[106],"statistical":[107],"package,":[108],"Multiexperiment":[109],"Viewer":[110],"(MeV),":[111],"several":[113,233],"other":[114,135],"popular":[115],"software":[117,198,269],"adds":[120],"capability":[122],"easily":[124,281],"query":[129],"KEGG,":[130],"EMBL":[131],"STRING,":[132],"DAVID,":[133],"widely-used":[136],"bioinformatics":[137],"sites.":[139],"Query":[140],"results":[141],"these":[143],"be":[147,187,279,310],"transferred":[148],"tools":[151,270],"further":[153],"analysis":[154,202],"few":[157],"clicks.":[158],"acquires":[160],"screen":[166],"scraping,":[167],"microformats,":[168],"embedded":[169,188],"XML,":[170],"services.":[173],"We":[174,192],"define":[175],"microformat,":[177],"which":[178],"allows":[179,299],"information":[181],"compatible":[182],"HTML":[190],"documents.":[191],"demonstrate":[193],"capabilities":[195,305],"this":[197],"performing":[200],"genes":[205,228],"activated":[206],"microbe":[209],"Halobacterium":[210],"salinarum":[211],"NRC-1":[212],"response":[214],"anaerobic":[216],"environments.":[217],"Starting":[218],"microarray":[220],"data,":[221],"we":[222],"explore":[223],"functions":[224],"differentially":[226],"expressed":[227],"construct":[238],"integrated":[240],"view":[241],"cellular":[244],"processes":[245],"involved.":[246],"CONCLUSION:":[247],"incorporates":[250],"into":[253,282],"environment":[256],"interactive":[259],"sharing":[260],"diverse":[264],"without":[271],"maintaining":[272],"copies.":[274],"Additional":[275],"incorporated":[280],"framework":[284],"using":[285],"scripting":[287],"platform":[288],"browser.":[292],"Performing":[293],"browser":[298,308],"excellent":[301],"search":[302],"navigation":[304],"used":[311],"combination":[313],"powerful":[315]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
