{"id":"https://openalex.org/W1484074690","doi":"https://doi.org/10.1186/1471-2105-8-381","title":"PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments","display_name":"PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments","publication_year":2007,"publication_date":"2007-10-11","ids":{"openalex":"https://openalex.org/W1484074690","doi":"https://doi.org/10.1186/1471-2105-8-381","mag":"1484074690","pmid":"https://pubmed.ncbi.nlm.nih.gov/17931421"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-381","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-381","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-381","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-381","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013735262","display_name":"Daniel R. Caffrey","orcid":null},"institutions":[{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel R Caffrey","raw_affiliation_strings":["Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA 02139, USA. daniel.caffrey@gmail.com","Pfizer Global Research and Development, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA 02139, USA. daniel.caffrey@gmail.com","institution_ids":["https://openalex.org/I180857899"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Cambridge, USA","institution_ids":["https://openalex.org/I180857899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044927274","display_name":"Paul H Dana","orcid":null},"institutions":[{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul H Dana","raw_affiliation_strings":["Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","Pfizer Global Research and Development, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I180857899"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Cambridge, USA","institution_ids":["https://openalex.org/I180857899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079116072","display_name":"Vidhya Mathur","orcid":null},"institutions":[{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vidhya Mathur","raw_affiliation_strings":["Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","Pfizer Global Research and Development, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I180857899"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Cambridge, USA","institution_ids":["https://openalex.org/I180857899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073104611","display_name":"Marco Ocano","orcid":null},"institutions":[{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marco Ocano","raw_affiliation_strings":["Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","Pfizer Global Research and Development, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I180857899"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Cambridge, USA","institution_ids":["https://openalex.org/I180857899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016872317","display_name":"Eun\u2010Jong Hong","orcid":null},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eun-Jong Hong","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, MA, 02139, USA","[Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, MA, 02139, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"[Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, USA]","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056424055","display_name":"Yaoyu E. Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yaoyu E Wang","raw_affiliation_strings":["Bioinformatics Program and Biomedical Engineering Department, Boston University, MA, 02215, USA","Bioinformatics Program and Biomedical Engineering Department, Boston University, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program and Biomedical Engineering Department, Boston University, MA, 02215, USA","institution_ids":["https://openalex.org/I111088046"]},{"raw_affiliation_string":"Bioinformatics Program and Biomedical Engineering Department, Boston University, USA","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032346196","display_name":"Shyamal Somaroo","orcid":null},"institutions":[{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shyamal Somaroo","raw_affiliation_strings":["Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","Pfizer Global Research and Development, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I180857899"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Cambridge, USA","institution_ids":["https://openalex.org/I180857899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071631101","display_name":"Brian E. Caffrey","orcid":null},"institutions":[{"id":"https://openalex.org/I1306486109","display_name":"Dublin Institute For Advanced Studies","ror":"https://ror.org/051sx6d27","country_code":"IE","type":"facility","lineage":["https://openalex.org/I1306486109"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Brian E Caffrey","raw_affiliation_strings":["School of Theoretical Physics, Dublin Institute for Advanced Studies, 10 Burlington Road, Dublin 4, Ireland","School of Theoretical Physics, Dublin Institute for Advanced Studies, Dublin 4, Ireland#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Theoretical Physics, Dublin Institute for Advanced Studies, 10 Burlington Road, Dublin 4, Ireland","institution_ids":["https://openalex.org/I1306486109"]},{"raw_affiliation_string":"School of Theoretical Physics, Dublin Institute for Advanced Studies, Dublin 4, Ireland#TAB#","institution_ids":["https://openalex.org/I1306486109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018612082","display_name":"Shobha Potluri","orcid":null},"institutions":[{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shobha Potluri","raw_affiliation_strings":["Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","Pfizer Global Research and Development, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I180857899"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Cambridge, USA","institution_ids":["https://openalex.org/I180857899"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089308999","display_name":"Enoch S. Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Enoch S Huang","raw_affiliation_strings":["Bioinformatics Program and Biomedical Engineering Department, Boston University, MA, 02215, USA","Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","Bioinformatics Program and Biomedical Engineering Department, Boston University, USA","Pfizer Global Research and Development, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program and Biomedical Engineering Department, Boston University, MA, 02215, USA","institution_ids":["https://openalex.org/I111088046"]},{"raw_affiliation_string":"Pfizer Global Research and Development, 620 Memorial Drive, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I180857899"]},{"raw_affiliation_string":"Bioinformatics Program and Biomedical Engineering Department, Boston University, USA","institution_ids":["https://openalex.org/I111088046"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Cambridge, USA","institution_ids":["https://openalex.org/I180857899"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5013735262"],"corresponding_institution_ids":["https://openalex.org/I180857899"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.0441884,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"8","issue":"1","first_page":"381","last_page":"381"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7990812063217163},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.7310429811477661},{"id":"https://openalex.org/keywords/sequence-logo","display_name":"Sequence logo","score":0.6668850183486938},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6601834893226624},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.6139596700668335},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.6099825501441956},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5624138116836548},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.5157135128974915},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.512682318687439},{"id":"https://openalex.org/keywords/hyperlink","display_name":"Hyperlink","score":0.48170310258865356},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43303295969963074},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.41141384840011597},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35960304737091064},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2083301842212677},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.18587759137153625},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1803140640258789},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15972855687141418},{"id":"https://openalex.org/keywords/web-page","display_name":"Web page","score":0.11600667238235474},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08866316080093384}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7990812063217163},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.7310429811477661},{"id":"https://openalex.org/C105082737","wikidata":"https://www.wikidata.org/wiki/Q7452470","display_name":"Sequence logo","level":5,"score":0.6668850183486938},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6601834893226624},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.6139596700668335},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.6099825501441956},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5624138116836548},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.5157135128974915},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.512682318687439},{"id":"https://openalex.org/C30088001","wikidata":"https://www.wikidata.org/wiki/Q102014","display_name":"Hyperlink","level":3,"score":0.48170310258865356},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43303295969963074},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41141384840011597},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35960304737091064},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2083301842212677},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.18587759137153625},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1803140640258789},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15972855687141418},{"id":"https://openalex.org/C21959979","wikidata":"https://www.wikidata.org/wiki/Q36774","display_name":"Web page","level":2,"score":0.11600667238235474},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08866316080093384}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-8-381","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-381","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-381","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17931421","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17931421","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dspace.mit.edu:1721.1/58921","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/58921","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioMed Central Ltd","raw_type":"Article"},{"id":"pmh:oai:open.bu.edu:2144/3002","is_oa":true,"landing_page_url":"https://hdl.handle.net/2144/3002","pdf_url":null,"source":{"id":"https://openalex.org/S4306402183","display_name":"OpenBU/Boston University Institutional Repository (Boston University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I111088046","host_organization_name":"Boston University","host_organization_lineage":["https://openalex.org/I111088046"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2092438","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-8-381","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"mag:1484074690","is_oa":false,"landing_page_url":"https://dspace.mit.edu/openaccess-disseminate/1721.1/58921","pdf_url":null,"source":{"id":"https://openalex.org/S4306504412","display_name":"BioMed Central Ltd","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"BioMed Central Ltd","raw_type":null}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-381","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-381","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-381","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6700000166893005}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1484074690.pdf","grobid_xml":"https://content.openalex.org/works/W1484074690.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1574945381","https://openalex.org/W1982537943","https://openalex.org/W2004360551","https://openalex.org/W2009346772","https://openalex.org/W2033339460","https://openalex.org/W2091969321","https://openalex.org/W2094406540","https://openalex.org/W2118321916","https://openalex.org/W2120399525","https://openalex.org/W2129088316","https://openalex.org/W2130479394","https://openalex.org/W2137071423","https://openalex.org/W2141353688","https://openalex.org/W2141411672","https://openalex.org/W2148047088","https://openalex.org/W2149057166","https://openalex.org/W2157018928","https://openalex.org/W2161732286","https://openalex.org/W4210241463"],"related_works":["https://openalex.org/W2035120013","https://openalex.org/W2025002290","https://openalex.org/W2150956643","https://openalex.org/W2156563976","https://openalex.org/W2105364679","https://openalex.org/W2482892240","https://openalex.org/W2097016219","https://openalex.org/W2168926448","https://openalex.org/W3013098193","https://openalex.org/W2067863596","https://openalex.org/W2136085935","https://openalex.org/W2406523068","https://openalex.org/W2096647079","https://openalex.org/W2018564950","https://openalex.org/W2282501978","https://openalex.org/W2037789401","https://openalex.org/W2139755116","https://openalex.org/W2156207120","https://openalex.org/W2124144223","https://openalex.org/W1972394537"],"abstract_inverted_index":null,"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}
