{"id":"https://openalex.org/W2014022465","doi":"https://doi.org/10.1186/1471-2105-8-372","title":"Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases","display_name":"Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases","publication_year":2007,"publication_date":"2007-10-04","ids":{"openalex":"https://openalex.org/W2014022465","doi":"https://doi.org/10.1186/1471-2105-8-372","mag":"2014022465","pmid":"https://pubmed.ncbi.nlm.nih.gov/17916244"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-372","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-372","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-372","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-372","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082197380","display_name":"Seth Berger","orcid":"https://orcid.org/0000-0001-7517-4302"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Seth I Berger","raw_affiliation_strings":["Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, 10029, New York, USA. seth.berger@mssm.edu","Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, 10029, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, 10029, New York, USA. seth.berger@mssm.edu","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, 10029, New York, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088934712","display_name":"Jeremy M Posner","orcid":null},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy M Posner","raw_affiliation_strings":["Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, 10029, New York, USA","Mount Sinai School of Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, 10029, New York, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Mount Sinai School of Medicine","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032951414","display_name":"Avi Ma\u2019ayan","orcid":"https://orcid.org/0000-0002-6904-1017"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Avi Ma'ayan","raw_affiliation_strings":["Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, 10029, New York, USA","Mount Sinai School of Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, 10029, New York, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Mount Sinai School of Medicine","institution_ids":["https://openalex.org/I98704320"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5082197380"],"corresponding_institution_ids":["https://openalex.org/I98704320"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.1707,"has_fulltext":true,"cited_by_count":148,"citation_normalized_percentile":{"value":0.94785681,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"8","issue":"1","first_page":"372","last_page":"372"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.019200000911951065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.5838309526443481},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5562922358512878},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5486441850662231},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5120909214019775},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4999055862426758},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.49720075726509094},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4794113337993622},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.44837698340415955},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4416927695274353},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4392361640930176},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38221800327301025},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3780798316001892},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26241835951805115},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.18227902054786682},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08869114518165588},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08394953608512878}],"concepts":[{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.5838309526443481},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5562922358512878},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5486441850662231},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5120909214019775},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4999055862426758},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.49720075726509094},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4794113337993622},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.44837698340415955},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4416927695274353},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4392361640930176},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38221800327301025},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3780798316001892},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26241835951805115},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.18227902054786682},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08869114518165588},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08394953608512878},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-8-372","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-372","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-372","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17916244","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17916244","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:8e927734ad1b4844aae38c1becc17754","is_oa":false,"landing_page_url":"https://doaj.org/article/8e927734ad1b4844aae38c1becc17754","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 372 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2082048","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2082048","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-372","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-372","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-372","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2014022465.pdf","grobid_xml":"https://content.openalex.org/works/W2014022465.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1508416409","https://openalex.org/W1525575010","https://openalex.org/W1597403892","https://openalex.org/W1599207601","https://openalex.org/W1811927564","https://openalex.org/W1876024155","https://openalex.org/W1967053372","https://openalex.org/W1977186059","https://openalex.org/W1982428412","https://openalex.org/W1989262356","https://openalex.org/W1994803330","https://openalex.org/W2006933206","https://openalex.org/W2008620264","https://openalex.org/W2078872331","https://openalex.org/W2087347434","https://openalex.org/W2094613397","https://openalex.org/W2097036913","https://openalex.org/W2101181377","https://openalex.org/W2104768328","https://openalex.org/W2106119591","https://openalex.org/W2109529357","https://openalex.org/W2110280725","https://openalex.org/W2112090702","https://openalex.org/W2113654464","https://openalex.org/W2123280311","https://openalex.org/W2126434857","https://openalex.org/W2129996459","https://openalex.org/W2130863229","https://openalex.org/W2133167066","https://openalex.org/W2141629057","https://openalex.org/W2141657644","https://openalex.org/W2144014661","https://openalex.org/W2145100112","https://openalex.org/W2148853951","https://openalex.org/W2153624566","https://openalex.org/W2155320925","https://openalex.org/W2159675211","https://openalex.org/W2163424852","https://openalex.org/W2164328371","https://openalex.org/W2167869241","https://openalex.org/W2171030481","https://openalex.org/W2916288174","https://openalex.org/W4240802092","https://openalex.org/W4244818997","https://openalex.org/W4255855797","https://openalex.org/W6609026361"],"related_works":["https://openalex.org/W4229728790","https://openalex.org/W2800059693","https://openalex.org/W2066232588","https://openalex.org/W4377086792","https://openalex.org/W2767490506","https://openalex.org/W1987705964","https://openalex.org/W1841073402","https://openalex.org/W2106286319","https://openalex.org/W2069244164","https://openalex.org/W3087302704"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"recent":[2],"years,":[3],"mammalian":[4,112],"protein-protein":[5],"interaction":[6,85,113],"network":[7,114,160],"databases":[8,16],"have":[9],"been":[10],"developed.":[11],"The":[12,133,151],"interactions":[13,49,121],"in":[14,65,74,80,87,244],"these":[15,91],"are":[17,50],"either":[18],"extracted":[19,27],"manually":[20],"from":[21,29,143,230],"low-throughput":[22],"experimental":[23,187],"biomedical":[24],"research":[25],"literature,":[26],"automatically":[28],"literature":[30],"using":[31,41,52,131],"techniques":[32,117],"such":[33,44,196],"as":[34,45,62,70,127,197,206,208],"natural":[35],"language":[36],"processing":[37],"(NLP),":[38],"generated":[39],"experimentally":[40],"high-throughput":[42],"methods":[43],"yeast-2-hybrid":[46],"screens,":[47],"or":[48,59,68,237,247],"predicted":[51],"an":[53],"assortment":[54],"of":[55,83,110,146,192,210],"computational":[56],"approaches.":[57],"Genes":[58],"proteins":[60,94,195,213,229,238],"identified":[61,69],"significantly":[63],"changing":[64],"proteomic":[66,204],"experiments,":[67,205],"susceptibility":[71],"disease":[72,216],"genes":[73,92,193,211,227,236],"genomic":[75,202],"studies,":[76],"can":[77,135,185,220],"be":[78,136,221],"placed":[79],"the":[81,108,175],"context":[82],"protein":[84,98,248],"networks":[86],"order":[88],"to":[89,95,118,138,173,189,223],"assign":[90],"and":[93,97,194,203,212,228,233],"pathways":[96,246],"complexes.":[99,249],"RESULTS:":[100],"Genes2Networks":[101,124,179],"is":[102,125,180],"a":[103,128,154,163],"software":[104,183],"system":[105,134,219],"that":[106,167,184,239],"integrates":[107],"content":[109],"ten":[111],"datasets.":[115],"Filtering":[116],"prune":[119],"low-confidence":[120],"were":[122],"implemented.":[123],"delivered":[126],"web-based":[129,159,182],"service":[130],"AJAX.":[132],"used":[137,172,222],"extract":[139],"relevant":[140],"subnetworks":[141],"created":[142],"\"seed\"":[144],"lists":[145,191,209],"human":[147],"Entrez":[148],"gene":[149],"symbols.":[150],"output":[152],"includes":[153],"dynamic":[155],"linkable":[156],"three":[157],"color":[158],"map,":[161],"with":[162,215],"statistical":[164],"analysis":[165],"report":[166],"identifies":[168],"significant":[169],"intermediate":[170],"nodes":[171],"connect":[174],"seed":[176,231],"list.":[177],"CONCLUSION:":[178],"powerful":[181],"help":[186],"biologists":[188],"interpret":[190],"those":[198],"commonly":[199],"produced":[200],"through":[201],"well":[207],"associated":[214],"processes.":[217],"This":[218],"find":[224],"relationships":[225],"between":[226],"lists,":[232],"predict":[234],"additional":[235],"may":[240],"play":[241],"key":[242],"roles":[243],"common":[245]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":12}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
