{"id":"https://openalex.org/W2002107667","doi":"https://doi.org/10.1186/1471-2105-8-367","title":"BNDB \u2013 The Biochemical Network Database","display_name":"BNDB \u2013 The Biochemical Network Database","publication_year":2007,"publication_date":"2007-10-02","ids":{"openalex":"https://openalex.org/W2002107667","doi":"https://doi.org/10.1186/1471-2105-8-367","mag":"2002107667","pmid":"https://pubmed.ncbi.nlm.nih.gov/17910766"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-367","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-367","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-367","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-367","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078561274","display_name":"Jan K\u00fcntzer","orcid":null},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jan K\u00fcntzer","raw_affiliation_strings":["Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, Germany. kuentzer@bioinf.uni-sb.de","Center for Bioinformatics Saarland University Saarbr\u00fccken Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Saarland University, 66041 Saarbr\u00fccken, Germany. kuentzer@bioinf.uni-sb.de","institution_ids":["https://openalex.org/I91712215"]},{"raw_affiliation_string":"Center for Bioinformatics Saarland University Saarbr\u00fccken Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015677497","display_name":"Christina Backes","orcid":"https://orcid.org/0000-0001-9330-9290"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christina Backes","raw_affiliation_strings":["Center for Bioinformatics, Saarland University, 66041, Saarbr\u00fccken, Germany","Center for Bioinformatics Saarland University Saarbr\u00fccken Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Saarland University, 66041, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]},{"raw_affiliation_string":"Center for Bioinformatics Saarland University Saarbr\u00fccken Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080637586","display_name":"Torsten Blum","orcid":"https://orcid.org/0000-0003-1216-2157"},"institutions":[{"id":"https://openalex.org/I4210133934","display_name":"Bernstein Center for Computational Neuroscience T\u00fcbingen","ror":"https://ror.org/03kfnwp54","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210092532","https://openalex.org/I4210133934"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Torsten Blum","raw_affiliation_strings":["Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, 72076, T\u00fcbingen, Germany","Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210133934","https://openalex.org/I8087733"]},{"raw_affiliation_string":"Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210133934","https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065580186","display_name":"Andreas Gerasch","orcid":null},"institutions":[{"id":"https://openalex.org/I4210133934","display_name":"Bernstein Center for Computational Neuroscience T\u00fcbingen","ror":"https://ror.org/03kfnwp54","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210092532","https://openalex.org/I4210133934"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Gerasch","raw_affiliation_strings":["Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, 72076, T\u00fcbingen, Germany","Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210133934","https://openalex.org/I8087733"]},{"raw_affiliation_string":"Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210133934","https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103045561","display_name":"Michael Kaufmann","orcid":"https://orcid.org/0000-0001-9186-3538"},"institutions":[{"id":"https://openalex.org/I4210133934","display_name":"Bernstein Center for Computational Neuroscience T\u00fcbingen","ror":"https://ror.org/03kfnwp54","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210092532","https://openalex.org/I4210133934"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Kaufmann","raw_affiliation_strings":["Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, 72076, T\u00fcbingen, Germany","Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210133934","https://openalex.org/I8087733"]},{"raw_affiliation_string":"Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210133934","https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053621010","display_name":"Oliver Kohlbacher","orcid":"https://orcid.org/0000-0003-1739-4598"},"institutions":[{"id":"https://openalex.org/I4210133934","display_name":"Bernstein Center for Computational Neuroscience T\u00fcbingen","ror":"https://ror.org/03kfnwp54","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210092532","https://openalex.org/I4210133934"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Kohlbacher","raw_affiliation_strings":["Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, 72076, T\u00fcbingen, Germany","Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210133934","https://openalex.org/I8087733"]},{"raw_affiliation_string":"Center for Bioinformatics/Wilhelm Schickard Institute for Computer Science, Eberhard Karls University T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210133934","https://openalex.org/I8087733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085594740","display_name":"Hans\u2010Peter Lenhof","orcid":"https://orcid.org/0000-0002-5820-9961"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans-Peter Lenhof","raw_affiliation_strings":["Center for Bioinformatics, Saarland University, 66041, Saarbr\u00fccken, Germany","Center for Bioinformatics Saarland University Saarbr\u00fccken Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Saarland University, 66041, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]},{"raw_affiliation_string":"Center for Bioinformatics Saarland University Saarbr\u00fccken Germany","institution_ids":["https://openalex.org/I91712215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5078561274"],"corresponding_institution_ids":["https://openalex.org/I91712215"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.8263,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.906244,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"367","last_page":"367"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.5033000111579895,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.5033000111579895,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1817999929189682,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.1362999975681305,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8086115121841431},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.5926713943481445},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5633615255355835},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5609383583068848},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.49139371514320374},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4763638973236084},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.4455820918083191},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.43782421946525574},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4171629548072815},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.26853811740875244}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8086115121841431},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.5926713943481445},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5633615255355835},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5609383583068848},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.49139371514320374},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4763638973236084},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.4455820918083191},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.43782421946525574},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4171629548072815},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26853811740875244},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-8-367","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-367","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-367","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17910766","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17910766","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6a367e57b36e414daf586ddd683fca8a","is_oa":false,"landing_page_url":"https://doaj.org/article/6a367e57b36e414daf586ddd683fca8a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 367 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2092437","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2092437","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-367","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-367","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-367","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320324316","display_name":"Klaus Tschira Stiftung","ror":"https://ror.org/052jep661"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2002107667.pdf","grobid_xml":"https://content.openalex.org/works/W2002107667.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W119851965","https://openalex.org/W1485184724","https://openalex.org/W1499796720","https://openalex.org/W1509396824","https://openalex.org/W1597403892","https://openalex.org/W1668625893","https://openalex.org/W1968766436","https://openalex.org/W1973415432","https://openalex.org/W1981050129","https://openalex.org/W1982428412","https://openalex.org/W1983594585","https://openalex.org/W1997921822","https://openalex.org/W2040733960","https://openalex.org/W2086475944","https://openalex.org/W2094010958","https://openalex.org/W2099396594","https://openalex.org/W2103538877","https://openalex.org/W2107903949","https://openalex.org/W2110280725","https://openalex.org/W2130687290","https://openalex.org/W2134672568","https://openalex.org/W2135030836","https://openalex.org/W2149194035","https://openalex.org/W2154021172","https://openalex.org/W2155253059","https://openalex.org/W2155723007","https://openalex.org/W2158784643","https://openalex.org/W2159675211","https://openalex.org/W2160948978","https://openalex.org/W2161732286","https://openalex.org/W2165674132","https://openalex.org/W2917064891","https://openalex.org/W4230932396","https://openalex.org/W4231551535"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2002476357","https://openalex.org/W2391444248","https://openalex.org/W2977818562"],"abstract_inverted_index":{"BACKGROUND:":[0],"Technological":[1],"advances":[2],"in":[3,13,25,65,114],"high-throughput":[4],"techniques":[5],"and":[6,36,49,97,103,155,171,192,206,221,255],"efficient":[7,92],"data":[8,22,52,122,237],"acquisition":[9],"methods":[10],"have":[11,29,71],"resulted":[12],"a":[14,87,110,115,119,132,138,153,186,197,202,228,233],"massive":[15],"amount":[16],"of":[17,46,106,121,142,146,194,208,223,235,257],"life":[18],"science":[19],"data.":[20,100,210,259],"The":[21,101],"is":[23,86,109,150,162,261],"stored":[24],"numerous":[26],"databases":[27,48,78,108],"that":[28],"been":[30],"established":[31],"over":[32],"the":[33,44,47,50,81,107,127,173,190,195,209,243,249,258],"last":[34],"decades":[35],"are":[37],"essential":[38],"resources":[39],"for":[40,61,90,94,189,217,251],"scientists":[41],"nowadays.":[42],"However,":[43],"diversity":[45],"underlying":[51],"models":[53],"make":[54],"it":[55],"difficult":[56],"to":[57,72,79,118,165,178,181,232],"combine":[58],"this":[59],"information":[60],"solving":[62],"complex":[63],"problems":[64],"systems":[66,93],"biology.":[67],"Currently,":[68],"researchers":[69],"typically":[70],"browse":[73],"several,":[74],"often":[75],"highly":[76],"focused,":[77],"obtain":[80],"required":[82],"information.":[83],"Hence,":[84],"there":[85],"pressing":[88],"need":[89],"more":[91],"integrating,":[95],"analyzing,":[96],"interpreting":[98],"these":[99],"standardization":[102],"virtual":[104],"consolidation":[105],"major":[111],"challenge":[112],"resulting":[113],"unified":[116,230],"access":[117,231],"variety":[120,234],"sources.":[123,238],"DESCRIPTION:":[124],"We":[125],"present":[126],"Biochemical":[128],"Network":[129],"Database":[130],"(BNDB),":[131],"powerful":[133,163,203],"relational":[134],"database":[135],"platform,":[136],"allowing":[137],"complete":[139],"semantic":[140],"integration":[141,241],"an":[143,218],"extensive":[144],"collection":[145],"external":[147,236],"databases.":[148],"BNDB":[149,226,260],"built":[151],"upon":[152],"comprehensive":[154],"extensible":[156,177],"object":[157],"model":[158,166],"called":[159],"BioCore,":[160],"which":[161],"enough":[164],"most":[167],"known":[168],"biochemical":[169,244],"processes":[170],"at":[172,264],"same":[174],"time":[175],"easily":[176],"be":[179],"adapted":[180],"new":[182],"biological":[183],"concepts.":[184],"Besides":[185],"web":[187],"interface":[188],"search":[191],"curation":[193],"data,":[196],"Java-based":[198],"viewer":[199],"(BiNA)":[200],"provides":[201],"platform-independent":[204],"visualization":[205,220,256],"navigation":[207,222],"BiNA":[211],"uses":[212],"sophisticated":[213],"graph":[214],"layout":[215],"algorithms":[216],"interactive":[219],"BNDB.":[224],"CONCLUSION:":[225],"allows":[227],"simple,":[229],"Its":[239],"tight":[240],"with":[242],"network":[245],"library":[246],"BN++":[247],"offers":[248],"possibility":[250],"import,":[252],"integration,":[253],"analysis,":[254],"freely":[262],"accessible":[263],"http://www.bndb.org.":[265]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
