{"id":"https://openalex.org/W2039984281","doi":"https://doi.org/10.1186/1471-2105-8-349","title":"A cross-species alignment tool (CAT)","display_name":"A cross-species alignment tool (CAT)","publication_year":2007,"publication_date":"2007-09-19","ids":{"openalex":"https://openalex.org/W2039984281","doi":"https://doi.org/10.1186/1471-2105-8-349","mag":"2039984281","pmid":"https://pubmed.ncbi.nlm.nih.gov/17880681"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-349","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-349","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-349","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-349","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100338825","display_name":"Heng Li","orcid":"https://orcid.org/0000-0003-4874-2874"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Heng Li","raw_affiliation_strings":["Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing 101300, China. lh3@sanger.ac.uk","Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China"],"affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing 101300, China. lh3@sanger.ac.uk","institution_ids":["https://openalex.org/I2801577699"]},{"raw_affiliation_string":"Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I100135526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101002647","display_name":"Liang Guan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liang Guan","raw_affiliation_strings":["Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","Graduate University of the Chinese Academy of Sciences, Yuquan Road 19A, Beijing, 100039, China","Institute of Computing Technology, Chinese Academy of Science, Beijing, 100080, China","James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China"],"affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I100135526"]},{"raw_affiliation_string":"Graduate University of the Chinese Academy of Sciences, Yuquan Road 19A, Beijing, 100039, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Science, Beijing, 100080, China","institution_ids":["https://openalex.org/I4210090176"]},{"raw_affiliation_string":"James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100338105","display_name":"Tao Liu","orcid":"https://orcid.org/0000-0002-4726-0104"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Liu","raw_affiliation_strings":["Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China"],"affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I100135526"]},{"raw_affiliation_string":"James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014691736","display_name":"Yiran Guo","orcid":"https://orcid.org/0000-0002-6549-8589"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiran Guo","raw_affiliation_strings":["Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","Graduate University of the Chinese Academy of Sciences, Yuquan Road 19A, Beijing, 100039, China"],"affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I100135526"]},{"raw_affiliation_string":"Graduate University of the Chinese Academy of Sciences, Yuquan Road 19A, Beijing, 100039, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021041719","display_name":"Wei\u2010Mou Zheng","orcid":"https://orcid.org/0000-0001-6546-2917"},"institutions":[{"id":"https://openalex.org/I4210125404","display_name":"Institute of Theoretical Physics","ror":"https://ror.org/02xtbq882","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210125404"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei-Mou Zheng","raw_affiliation_strings":["Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing, 100080, China","James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China"],"affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I100135526"]},{"raw_affiliation_string":"Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing, 100080, China","institution_ids":["https://openalex.org/I4210125404","https://openalex.org/I19820366"]},{"raw_affiliation_string":"James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074701975","display_name":"Gane Ka\u2010Shu Wong","orcid":"https://orcid.org/0000-0001-6108-5560"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Gane Ka-Shu Wong","raw_affiliation_strings":["Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China","UW Genome Center, Department of Medicine, University of Washington, Seattle, WA, 98195, USA"],"affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I100135526"]},{"raw_affiliation_string":"James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"UW Genome Center, Department of Medicine, University of Washington, Seattle, WA, 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111964102","display_name":"Jun Wang","orcid":"https://orcid.org/0009-0008-8475-2934"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210119107","display_name":"Institute of Human Genetics","ror":"https://ror.org/02jzt6t86","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210119107","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["CN","DK","PL"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK-5230, Odense M, Denmark","James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China","The Institute of Human Genetics, University of Aarhus, DK-8000, Aarhus C, Denmark"],"affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing, 101300, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I100135526"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK-5230, Odense M, Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, 310008, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"The Institute of Human Genetics, University of Aarhus, DK-8000, Aarhus C, Denmark","institution_ids":["https://openalex.org/I204337017","https://openalex.org/I4210119107"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100338825"],"corresponding_institution_ids":["https://openalex.org/I100135526","https://openalex.org/I2801577699"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.134,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.52887744,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"8","issue":"1","first_page":"349","last_page":"349"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6184715032577515},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6103772521018982},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5845280289649963},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5799771547317505},{"id":"https://openalex.org/keywords/extant-taxon","display_name":"Extant taxon","score":0.5549957752227783},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.4953109323978424},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4886510670185089},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43556341528892517},{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.4155963361263275},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3790441155433655},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3613947033882141},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33749455213546753},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3037997782230377},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.13955605030059814},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08743554353713989}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6184715032577515},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6103772521018982},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5845280289649963},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5799771547317505},{"id":"https://openalex.org/C178300618","wikidata":"https://www.wikidata.org/wiki/Q1898509","display_name":"Extant taxon","level":2,"score":0.5549957752227783},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.4953109323978424},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4886510670185089},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43556341528892517},{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.4155963361263275},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3790441155433655},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3613947033882141},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33749455213546753},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3037997782230377},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.13955605030059814},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08743554353713989},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-8-349","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-349","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-349","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17880681","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17880681","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:sdu.dk:publications/f1470400-def1-11dc-860c-000ea68e967b","is_oa":false,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/f1470400-def1-11dc-860c-000ea68e967b","pdf_url":null,"source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Li, H, Guan, L, Liu, T, Guo, Y, Zheng, W-M, Wong, G K-S & Wang, J 2007, 'A cross-species alignment tool (CAT)', BMC Bioinformatics, vol. 8, no. 349. https://doi.org/10.1186/1471-2105-8-349","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:74a03b0847354b23ab7edb6620f24709","is_oa":true,"landing_page_url":"https://doaj.org/article/74a03b0847354b23ab7edb6620f24709","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 349 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2082505","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2082505","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-349","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-349","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-349","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6600000262260437,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2386051634","display_name":null,"funder_award_id":"90608010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G372478466","display_name":null,"funder_award_id":"40313","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4511763425","display_name":null,"funder_award_id":"30221004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5390887149","display_name":null,"funder_award_id":"90612019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6258415954","display_name":null,"funder_award_id":"Chinese","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6592453898","display_name":null,"funder_award_id":"90403130","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7737684587","display_name":null,"funder_award_id":"D07030200740000","funder_id":"https://openalex.org/F4320325902","funder_display_name":"Beijing Municipal Science and Technology Commission"},{"id":"https://openalex.org/G7942070958","display_name":null,"funder_award_id":"30392130","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320310483","display_name":"Sundhed og Sygdom, Det Frie Forskningsr\u00e5d","ror":"https://ror.org/03ge1nb22"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320325902","display_name":"Beijing Municipal Science and Technology Commission","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2039984281.pdf","grobid_xml":"https://content.openalex.org/works/W2039984281.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1523340433","https://openalex.org/W1966833356","https://openalex.org/W1986234964","https://openalex.org/W1996423252","https://openalex.org/W2053276922","https://openalex.org/W2057998009","https://openalex.org/W2096525273","https://openalex.org/W2099275700","https://openalex.org/W2107903949","https://openalex.org/W2108787198","https://openalex.org/W2109521234","https://openalex.org/W2112240593","https://openalex.org/W2118930999","https://openalex.org/W2128591967","https://openalex.org/W2136145671","https://openalex.org/W2137986897","https://openalex.org/W2146696273","https://openalex.org/W2158714788","https://openalex.org/W2168783124","https://openalex.org/W2169124753","https://openalex.org/W4230932396","https://openalex.org/W4245803912"],"related_works":["https://openalex.org/W4256528904","https://openalex.org/W1597543017","https://openalex.org/W4245153001","https://openalex.org/W4243165149","https://openalex.org/W3147492987","https://openalex.org/W2938575486","https://openalex.org/W4237600267","https://openalex.org/W4283069614","https://openalex.org/W2007294720","https://openalex.org/W2286180676"],"abstract_inverted_index":{"Examined":[0],"from":[1],"different":[2],"angles,":[3],"CAT":[4,21],"outperforms":[5],"other":[6],"extant":[7],"alignment":[8],"tools.":[9],"Tested":[10],"against":[11],"all":[12],"available":[13],"mouse-human":[14],"and":[15,25,34],"zebrafish-human":[16],"orthologs,":[17],"we":[18],"demonstrate":[19],"that":[20],"combines":[22],"the":[23,28,37,40],"specificity":[24],"speed":[26],"of":[27,39],"best":[29,41],"intra-species":[30],"algorithms,":[31],"like":[32,44],"BLAT":[33],"sim4,":[35],"with":[36],"sensitivity":[38],"inter-species":[42],"tools,":[43],"GeneWise.":[45]},"counts_by_year":[{"year":2023,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}