{"id":"https://openalex.org/W2105657655","doi":"https://doi.org/10.1186/1471-2105-8-338","title":"OntologyWidget \u2013 a reusable, embeddable widget for easily locating ontology terms","display_name":"OntologyWidget \u2013 a reusable, embeddable widget for easily locating ontology terms","publication_year":2007,"publication_date":"2007-09-13","ids":{"openalex":"https://openalex.org/W2105657655","doi":"https://doi.org/10.1186/1471-2105-8-338","mag":"2105657655","pmid":"https://pubmed.ncbi.nlm.nih.gov/17854506"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-338","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-338","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-338","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-338","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056299349","display_name":"Catherine C Beauheim","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Catherine C Beauheim","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5120, USA. beauheim@genome.stanford.edu","Dept. of Genetics, Stanford University, School of Medicine, Stanford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5120, USA. beauheim@genome.stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Dept. of Genetics, Stanford University, School of Medicine, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076703213","display_name":"Farrell Wymore","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Farrell Wymore","raw_affiliation_strings":["Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028463636","display_name":"Michael Nitzberg","orcid":"https://orcid.org/0009-0005-7846-0634"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Nitzberg","raw_affiliation_strings":["Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042722262","display_name":"Zachariah K. Zachariah","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zachariah K Zachariah","raw_affiliation_strings":["Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061679983","display_name":"Heng Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heng Jin","raw_affiliation_strings":["Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027074210","display_name":"J. H. Pate Skene","orcid":"https://orcid.org/0000-0003-3205-0697"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]},{"id":"https://openalex.org/I4210153043","display_name":"Duke University Hospital","ror":"https://ror.org/04bct7p84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876","https://openalex.org/I4210144876","https://openalex.org/I4210153043"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"JH Pate Skene","raw_affiliation_strings":["Department of Neurobiology, Duke University Medical Center, Durham, NC, 27710, USA","Dept. of Neurobiology, Duke University Medical Center, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I170897317","https://openalex.org/I4210153043","https://openalex.org/I4210126298"]},{"raw_affiliation_string":"Dept. of Neurobiology, Duke University Medical Center, Durham, USA","institution_ids":["https://openalex.org/I170897317","https://openalex.org/I4210153043","https://openalex.org/I4210126298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113321696","display_name":"Catherine A. Ball","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Catherine A Ball","raw_affiliation_strings":["Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305-5307, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Biochemistry Stanford University School of Medicine, \u00a0, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058333700","display_name":"Gavin Sherlock","orcid":"https://orcid.org/0000-0002-1692-4983"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gavin Sherlock","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305-5120, USA","Dept. of Genetics, Stanford University, School of Medicine, Stanford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Dept. of Genetics, Stanford University, School of Medicine, Stanford, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5058333700"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2692,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.59569647,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"8","issue":"1","first_page":"338","last_page":"338"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9560999870300293,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9560999870300293,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.021299999207258224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.00800000037997961,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.863025426864624},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7299880981445312},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5906878709793091},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.5897572040557861},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.5864148139953613},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5766429901123047},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.564021110534668},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.5529510974884033},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5159890651702881},{"id":"https://openalex.org/keywords/owl-s","display_name":"OWL-S","score":0.4560929834842682},{"id":"https://openalex.org/keywords/ajax","display_name":"Ajax","score":0.44078636169433594},{"id":"https://openalex.org/keywords/ontology-inference-layer","display_name":"Ontology Inference Layer","score":0.4277426600456238},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.4198024272918701},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.31039485335350037},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.27090442180633545},{"id":"https://openalex.org/keywords/web-standards","display_name":"Web standards","score":0.15974164009094238}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.863025426864624},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7299880981445312},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5906878709793091},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.5897572040557861},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.5864148139953613},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5766429901123047},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.564021110534668},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.5529510974884033},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5159890651702881},{"id":"https://openalex.org/C50382505","wikidata":"https://www.wikidata.org/wiki/Q2553356","display_name":"OWL-S","level":4,"score":0.4560929834842682},{"id":"https://openalex.org/C504723692","wikidata":"https://www.wikidata.org/wiki/Q134471","display_name":"Ajax","level":3,"score":0.44078636169433594},{"id":"https://openalex.org/C115408247","wikidata":"https://www.wikidata.org/wiki/Q3882789","display_name":"Ontology Inference Layer","level":5,"score":0.4277426600456238},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.4198024272918701},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.31039485335350037},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.27090442180633545},{"id":"https://openalex.org/C182321512","wikidata":"https://www.wikidata.org/wiki/Q1153289","display_name":"Web standards","level":3,"score":0.15974164009094238},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-8-338","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-338","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-338","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17854506","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17854506","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6ee44a9de0454011ba39648cfe8039b4","is_oa":false,"landing_page_url":"https://doaj.org/article/6ee44a9de0454011ba39648cfe8039b4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 338 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2080642","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2080642","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-338","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-338","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-338","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1814896211","display_name":null,"funder_award_id":"R01 HG003469","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6985784497","display_name":null,"funder_award_id":"U24 NS051870","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2105657655.pdf","grobid_xml":"https://content.openalex.org/works/W2105657655.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1871852719","https://openalex.org/W2096525273","https://openalex.org/W2103017472","https://openalex.org/W2144303444","https://openalex.org/W4236324471"],"related_works":["https://openalex.org/W2608149786","https://openalex.org/W2396086199","https://openalex.org/W2365397974","https://openalex.org/W2102229151","https://openalex.org/W2357882026","https://openalex.org/W1992492046","https://openalex.org/W2012420033","https://openalex.org/W152870918","https://openalex.org/W1794266373","https://openalex.org/W2138664789"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biomedical":[1],"ontologies":[2,213,364,377,398],"are":[3,378],"being":[4],"widely":[5],"used":[6,314,388],"to":[7,20,49,55,71,184,210,239,274,291,393],"annotate":[8],"biological":[9],"data":[10,26],"in":[11,84,250,389,412],"a":[12,58,65,105,112,138,148,160,181,295,321,327,341,353,373,382],"computer-accessible,":[13],"consistent":[14],"and":[15,23,38,75,95,97,133,162,265,280,308,352,423],"well-defined":[16,297],"manner.":[17],"However,":[18],"due":[19],"their":[21,242],"size":[22],"complexity,":[24],"annotating":[25],"with":[27,141,208,333],"appropriate":[28,121],"terms":[29,54,127],"from":[30,150,180,214,365,430],"an":[31,283,304,334],"ontology":[32,53,77,108,122,164,175,223,277,306,356,407],"is":[33,89,104,123,224,409,428],"often":[34],"challenging":[35],"for":[36,74,126,420],"experts":[37],"non-experts":[39],"alike,":[40],"because":[41],"there":[42],"exist":[43],"few":[44],"tools":[45],"that":[46,128,271,289,311,345,408],"allow":[47],"one":[48],"quickly":[50],"find":[51],"relevant":[52],"easily":[56,81],"populate":[57,137],"web":[59,196,235,261,278,317,342,349,402],"form.":[60],"RESULTS:":[61],"We":[62,193,300,338,358],"have":[63,194,301,339],"produced":[64],"tool,":[66],"OntologyWidget,":[67,303],"which":[68,166,204],"allows":[69],"users":[70],"rapidly":[72],"search":[73,109,118,307,330],"browse":[76],"terms.":[78,357],"OntologyWidget":[79,88,207,230,246,268,293,325,385,427],"can":[80,155,231,247,312,386],"be":[82,248,313,387],"embedded":[83],"other":[85,406],"web-based":[86,391],"applications.":[87],"written":[90],"using":[91,294],"AJAX":[92],"(Asynchronous":[93],"JavaScript":[94,422],"XML)":[96],"has":[98],"two":[99],"related":[100],"elements.":[101],"The":[102,174,416],"first":[103],"dynamic":[106,163],"auto-complete":[107,329],"feature.":[110],"As":[111],"user":[113,154],"enters":[114],"characters":[115],"into":[116],"the":[117,120,130,134,151,153,168,172,178,185,199,206,215,229,245,267,275,292,348,363,366,397,413,421,426],"box,":[119],"queried":[124],"remotely":[125],"match":[129],"typed-in":[131],"text,":[132],"query":[135],"results":[136],"drop-down":[139],"list":[140],"all":[142],"potential":[143],"matches.":[144],"Upon":[145],"selection":[146],"of":[147,171,228,355,362,396,425],"term":[149,158,183],"list,":[152],"locate":[156],"this":[157],"within":[159],"generic":[161],"browser,":[165],"comprises":[167],"second":[169],"element":[170],"tool.":[173],"browser":[176],"shows":[177],"paths":[179],"selected":[182],"root":[186],"as":[187,189,370,372],"well":[188,371],"parent/child":[190],"tree":[191,336],"hierarchies.":[192],"implemented":[195],"services":[197,403],"at":[198],"Stanford":[200],"Microarray":[201],"Database":[202],"(SMD),":[203],"provide":[205,400],"access":[209,273],"over":[211],"40":[212,361],"Open":[216],"Biological":[217],"Ontology":[218],"(OBO)":[219],"website":[220,368],"1.":[221],"Each":[222],"updated":[225,380],"weekly.":[226],"Adopters":[227],"either":[232],"use":[233],"SMD's":[234],"services,":[236,279],"or":[237,404],"elect":[238],"rely":[240],"on":[241,259,315,381],"own.":[243],"Deploying":[244],"accomplished":[249],"three":[251],"simple":[252,322],"steps:":[253],"(1)":[254],"install":[255,266],"Apache":[256],"Tomcat":[257],"2":[258],"one's":[260],"server,":[262],"(2)":[263],"download":[264],"servlet":[269],"stub":[270],"provides":[272,326],"SMD":[276],"(3)":[281],"create":[282],"html":[284,323],"(HyperText":[285],"Markup":[286],"Language)":[287],"file":[288],"refers":[290],"simple,":[296],"format.":[298,415],"CONCLUSION:":[299],"developed":[302,340],"easy-to-use":[305],"display":[309],"tool":[310],"any":[316,390,405],"page":[318,350],"by":[319],"creating":[320],"description.":[324],"rapid":[328],"function":[331],"paired":[332],"interactive":[335],"display.":[337],"service":[343],"layer":[344],"communicates":[346],"between":[347],"interface":[351],"database":[354],"currently":[359],"store":[360],"OBO":[367],"1,":[369],"several":[374],"others.":[375],"These":[376],"automatically":[379],"weekly":[383],"basis.":[384],"application":[392],"take":[394],"advantage":[395],"we":[399],"via":[401],"provided":[410],"elsewhere":[411],"correct":[414],"full":[417],"source":[418],"code":[419],"description":[424],"available":[429],"http://smd.stanford.edu/ontologyWidget/.":[431]},"counts_by_year":[],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
