{"id":"https://openalex.org/W1494019191","doi":"https://doi.org/10.1186/1471-2105-8-33","title":"Considerations in the identification of functional RNA structural elements in genomic alignments","display_name":"Considerations in the identification of functional RNA structural elements in genomic alignments","publication_year":2007,"publication_date":"2007-01-30","ids":{"openalex":"https://openalex.org/W1494019191","doi":"https://doi.org/10.1186/1471-2105-8-33","mag":"1494019191","pmid":"https://pubmed.ncbi.nlm.nih.gov/17263882"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-33","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-33","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-33","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022469128","display_name":"Tomas Babak","orcid":"https://orcid.org/0000-0003-0879-0134"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["CA","GB"],"is_corresponding":true,"raw_author_name":"Tomas Babak","raw_affiliation_strings":["Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, 160 College St, Toronto, ON M5S 3E1 Canada. tomas.babak@utoronto.ca <tomas.babak@utoronto.ca>","Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, Toronto, Canada","Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, 160 College St, Toronto, ON M5S 3E1 Canada. tomas.babak@utoronto.ca <tomas.babak@utoronto.ca>","institution_ids":[]},{"raw_affiliation_string":"Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, Canada","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032292978","display_name":"Benjamin J. Blencowe","orcid":"https://orcid.org/0000-0002-4461-0340"},"institutions":[{"id":"https://openalex.org/I2801862477","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17","country_code":"CA","type":"government","lineage":["https://openalex.org/I2801862477","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Benjamin J Blencowe","raw_affiliation_strings":["Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, 160 College St, Toronto, ON M5S 3E1, Canada","Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, ON M1R 4F9, Canada","Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, Toronto, Canada","Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, 160 College St, Toronto, ON M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, ON M1R 4F9, Canada","institution_ids":["https://openalex.org/I2801862477"]},{"raw_affiliation_string":"Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, Canada","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071531544","display_name":"Timothy R. Hughes","orcid":"https://orcid.org/0000-0002-8721-4719"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I2801862477","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17","country_code":"CA","type":"government","lineage":["https://openalex.org/I2801862477","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Timothy R Hughes","raw_affiliation_strings":["Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, 160 College St, Toronto, ON M5S 3E1, Canada","Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, ON M1R 4F9, Canada","Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, Canada","Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, 160 College St, Toronto, ON M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, ON M1R 4F9, Canada","institution_ids":["https://openalex.org/I2801862477"]},{"raw_affiliation_string":"Department of Medical Genetics and Microbiology, 10 King's College Circle, Toronto, Canada","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5022469128"],"corresponding_institution_ids":["https://openalex.org/I185261750","https://openalex.org/I241749"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.3493,"has_fulltext":true,"cited_by_count":69,"citation_normalized_percentile":{"value":0.92616771,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"33","last_page":"33"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6406843662261963},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5977610349655151},{"id":"https://openalex.org/keywords/shuffling","display_name":"Shuffling","score":0.5792691111564636},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5270469784736633},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.47492489218711853},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4553062319755554},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4302712678909302},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4164605438709259},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.390922874212265},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3489590287208557},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.33737364411354065},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24456503987312317},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1459607183933258}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6406843662261963},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5977610349655151},{"id":"https://openalex.org/C167927819","wikidata":"https://www.wikidata.org/wiki/Q1930567","display_name":"Shuffling","level":2,"score":0.5792691111564636},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5270469784736633},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.47492489218711853},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4553062319755554},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4302712678909302},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4164605438709259},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.390922874212265},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3489590287208557},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.33737364411354065},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24456503987312317},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1459607183933258},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-8-33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-33","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-33","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17263882","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17263882","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:utoronto.scholaris.ca:1807/83057","is_oa":true,"landing_page_url":"http://hdl.handle.net/1807/83057","pdf_url":"https://utoronto.scholaris.ca/bitstreams/a94f4126-910b-4efc-aff7-325097ad41c2/download","source":{"id":"https://openalex.org/S7407055458","display_name":"TSpace","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:ab0bd5ded880404bbb783f0035a75956","is_oa":true,"landing_page_url":"https://doaj.org/article/ab0bd5ded880404bbb783f0035a75956","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 33 (2007)","raw_type":"article"},{"id":"pmh:oai:localhost:1807/83057","is_oa":false,"landing_page_url":"http://doi.org/10.1186/1471-2105-8-33","pdf_url":null,"source":{"id":"https://openalex.org/S4306400261","display_name":"TSpace (University of Toronto)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I185261750","host_organization_name":"University of Toronto","host_organization_lineage":["https://openalex.org/I185261750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-33","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-33","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6899999976158142,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1494019191.pdf","grobid_xml":"https://content.openalex.org/works/W1494019191.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1543796220","https://openalex.org/W1622263187","https://openalex.org/W1822105579","https://openalex.org/W1901451661","https://openalex.org/W1974736226","https://openalex.org/W1992361112","https://openalex.org/W2003787247","https://openalex.org/W2020021066","https://openalex.org/W2021978074","https://openalex.org/W2033907622","https://openalex.org/W2039925764","https://openalex.org/W2042881722","https://openalex.org/W2050256969","https://openalex.org/W2077055994","https://openalex.org/W2088998577","https://openalex.org/W2094317717","https://openalex.org/W2103250001","https://openalex.org/W2105133080","https://openalex.org/W2107903949","https://openalex.org/W2115215562","https://openalex.org/W2127861583","https://openalex.org/W2136145671","https://openalex.org/W2137677639","https://openalex.org/W2140302584","https://openalex.org/W2145191876","https://openalex.org/W2146831994","https://openalex.org/W2151464048","https://openalex.org/W2152267201","https://openalex.org/W2158826174","https://openalex.org/W2161387979","https://openalex.org/W2162966556","https://openalex.org/W2167673850","https://openalex.org/W2168909179","https://openalex.org/W2915985519","https://openalex.org/W4230932396","https://openalex.org/W4234879553","https://openalex.org/W4234887284"],"related_works":["https://openalex.org/W4213239787","https://openalex.org/W4377131110","https://openalex.org/W2045745654","https://openalex.org/W2114337652","https://openalex.org/W4388857216","https://openalex.org/W2074694117","https://openalex.org/W4385457841","https://openalex.org/W2581348958","https://openalex.org/W4367048159","https://openalex.org/W962838231"],"abstract_inverted_index":{"Accurate":[0],"prediction":[1],"of":[2,16,38,50],"novel":[3],"RNA":[4],"structural":[5,52],"elements":[6,53],"in":[7,54,67],"genome":[8],"sequence":[9],"remains":[10],"a":[11],"difficult":[12],"problem,":[13],"and":[14,58],"development":[15],"an":[17,25],"appropriate":[18],"negative-control":[19],"strategy":[20],"for":[21,35,61],"multiple":[22],"alignments":[23],"is":[24],"important":[26],"practical":[27],"challenge.":[28],"Nonetheless,":[29],"the":[30,36,48],"general":[31],"trends":[32],"we":[33],"observed":[34],"distributions":[37],"predicted":[39],"ncRNAs":[40],"across":[41],"genomic":[42],"features":[43],"are":[44],"biologically":[45],"meaningful,":[46],"supporting":[47],"presence":[49],"secondary":[51,65],"many":[55],"3'":[56],"UTRs,":[57],"providing":[59],"evidence":[60],"evolutionary":[62],"selection":[63],"against":[64],"structures":[66],"coding":[68],"regions.":[69]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
