{"id":"https://openalex.org/W2113202266","doi":"https://doi.org/10.1186/1471-2105-8-325","title":"BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features","display_name":"BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features","publication_year":2007,"publication_date":"2007-09-01","ids":{"openalex":"https://openalex.org/W2113202266","doi":"https://doi.org/10.1186/1471-2105-8-325","mag":"2113202266","pmid":"https://pubmed.ncbi.nlm.nih.gov/17764570"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-325","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-325","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-325","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-325","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030771512","display_name":"Richard Tzong\u2010Han Tsai","orcid":"https://orcid.org/0000-0003-0513-107X"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Richard Tzong-Han Tsai","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Nankang, Taipei 115, Taiwan, PRoC. thtsai@iis.sinica.edu.tw","Institute of Information Science, Academia Sinica, Nankang, Taipei 115, Taiwan, PRoC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei 115, Taiwan, PRoC. thtsai@iis.sinica.edu.tw","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035083649","display_name":"Wen\u2010Chi Chou","orcid":"https://orcid.org/0000-0001-8408-3533"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Wen-Chi Chou","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018209702","display_name":"Ying-Shan Su","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"Ying-Shan Su","raw_affiliation_strings":["Institute of Human Nutrition, Columbia University, New York, NY, 10032, USA","Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","Institute of Human Nutrition, Columbia University, New York, USA","Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Human Nutrition, Columbia University, New York, NY, 10032, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Human Nutrition, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036253440","display_name":"Yu\u2010Chun Lin","orcid":"https://orcid.org/0000-0003-1470-4159"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu-Chun Lin","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032523770","display_name":"Cheng-Lung Sung","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Cheng-Lung Sung","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037362113","display_name":"Hong-Jie Dai","orcid":"https://orcid.org/0000-0002-1516-7255"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hong-Jie Dai","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037991081","display_name":"Irene Tzu-Hsuan Yeh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"Irene Tzu-Hsuan Yeh","raw_affiliation_strings":["Biological Sciences & Psychology, Mellon College of Sciences, Carnegie Mellon University, Pittsburgh, PA, USA","Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","Biological Sciences & Psychology, Mellon College of Sciences, Carnegie Mellon University, Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Sciences & Psychology, Mellon College of Sciences, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","institution_ids":["https://openalex.org/I84653119"]},{"raw_affiliation_string":"Biological Sciences & Psychology, Mellon College of Sciences, Carnegie Mellon University, Pittsburgh, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040490474","display_name":"Wei\u2010Chi Ku","orcid":"https://orcid.org/0000-0001-8438-3210"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Wei Ku","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017920981","display_name":"Ting\u2010Yi Sung","orcid":"https://orcid.org/0000-0002-6028-0409"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Ting-Yi Sung","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5119558606","display_name":"Wen\u2212Lian Hsu","orcid":"https://orcid.org/0000-0001-7061-3513"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Wen-Lian Hsu","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, 115, Taiwan, PRoC","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Nankang, Taipei, PRoC","institution_ids":["https://openalex.org/I84653119"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5017920981","https://openalex.org/A5119558606"],"corresponding_institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I84653119"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.9608,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.91512803,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"325","last_page":"325"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0071000000461936,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.786245584487915},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7849152088165283},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7235714197158813},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.6626152396202087},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.5820547342300415},{"id":"https://openalex.org/keywords/semantic-role-labeling","display_name":"Semantic role labeling","score":0.5515583753585815},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5045696496963501},{"id":"https://openalex.org/keywords/principle-of-maximum-entropy","display_name":"Principle of maximum entropy","score":0.4635414779186249},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.438149094581604},{"id":"https://openalex.org/keywords/adverbial","display_name":"Adverbial","score":0.41082483530044556},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34900280833244324},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.27542006969451904},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.25281834602355957},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12157243490219116}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.786245584487915},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7849152088165283},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7235714197158813},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.6626152396202087},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.5820547342300415},{"id":"https://openalex.org/C67277372","wikidata":"https://www.wikidata.org/wiki/Q7449085","display_name":"Semantic role labeling","level":3,"score":0.5515583753585815},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5045696496963501},{"id":"https://openalex.org/C9679016","wikidata":"https://www.wikidata.org/wiki/Q1417473","display_name":"Principle of maximum entropy","level":2,"score":0.4635414779186249},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.438149094581604},{"id":"https://openalex.org/C2779357210","wikidata":"https://www.wikidata.org/wiki/Q380012","display_name":"Adverbial","level":2,"score":0.41082483530044556},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34900280833244324},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.27542006969451904},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.25281834602355957},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12157243490219116}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-8-325","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-325","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-325","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17764570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17764570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:7e5221ea40554ea0b8c8aad73a208f9a","is_oa":false,"landing_page_url":"https://doaj.org/article/7e5221ea40554ea0b8c8aad73a208f9a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 325 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2072962","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2072962","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-325","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-325","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-325","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.75}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320321041","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113202266.pdf","grobid_xml":"https://content.openalex.org/works/W2113202266.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W56350200","https://openalex.org/W102233799","https://openalex.org/W108101778","https://openalex.org/W186166080","https://openalex.org/W204260652","https://openalex.org/W576001834","https://openalex.org/W1507020546","https://openalex.org/W1531859941","https://openalex.org/W1535936886","https://openalex.org/W1574901103","https://openalex.org/W1623698862","https://openalex.org/W1670599640","https://openalex.org/W1981518629","https://openalex.org/W2001792610","https://openalex.org/W2002664886","https://openalex.org/W2025209629","https://openalex.org/W2046618236","https://openalex.org/W2047782770","https://openalex.org/W2067551521","https://openalex.org/W2067994019","https://openalex.org/W2078285016","https://openalex.org/W2087064593","https://openalex.org/W2102281458","https://openalex.org/W2122139846","https://openalex.org/W2126259921","https://openalex.org/W2126851059","https://openalex.org/W2138043057","https://openalex.org/W2139259976","https://openalex.org/W2145310422","https://openalex.org/W2146191280","https://openalex.org/W2151170651","https://openalex.org/W2154626406","https://openalex.org/W2158847908","https://openalex.org/W2161299591","https://openalex.org/W2163107094","https://openalex.org/W2163362093","https://openalex.org/W2164666853","https://openalex.org/W2168808732","https://openalex.org/W2231482247","https://openalex.org/W2533058543","https://openalex.org/W2885050925","https://openalex.org/W3029645440","https://openalex.org/W3144372880","https://openalex.org/W4220749221","https://openalex.org/W4293775970","https://openalex.org/W6631390133"],"related_works":["https://openalex.org/W2368651715","https://openalex.org/W2572241437","https://openalex.org/W150863218","https://openalex.org/W1590308178","https://openalex.org/W1515542156","https://openalex.org/W2339319059","https://openalex.org/W4308590518","https://openalex.org/W3002472320","https://openalex.org/W2399486917","https://openalex.org/W2113202266"],"abstract_inverted_index":{"BACKGROUND:":[0],"Bioinformatics":[1],"tools":[2],"for":[3,11,36,84,162,269,368,375],"automatic":[4],"processing":[5,29,96],"of":[6,17,52,103,171,182,196,210,252,263,281,299,330,350],"biomedical":[7,40,53,63,86,119,134,144,153,189,266,275,282,376],"literature":[8],"are":[9,82,149,156,320],"invaluable":[10],"both":[12],"the":[13,39,50,100,169,180,194,208,211,235,261,274,278,297,314,331,342,359,365],"design":[14],"and":[15,58,70,73,79,110,188,191,245,255,283,291,355],"interpretation":[16],"large-scale":[18],"experiments.":[19],"Many":[20],"information":[21],"extraction":[22,51,65],"(IE)":[23],"systems":[24,66,184,272],"that":[25,98,124,155,204,220,228,307,334],"incorporate":[26,347],"natural":[27,94],"language":[28,95],"(NLP)":[30],"techniques":[31],"have":[32,337],"thus":[33],"been":[34],"developed":[35],"use":[37],"in":[38,46,108,273,341],"field.":[41],"A":[42],"key":[43],"IE":[44],"task":[45],"this":[47],"field":[48],"is":[49,92,137,226,372,378],"relations,":[54],"such":[55,287],"as":[56,113,288],"protein-protein":[57],"gene-disease":[59],"interactions.":[60],"However,":[61],"most":[62],"relation":[64],"usually":[67],"ignore":[68],"adverbial":[69],"prepositional":[71],"phrases":[72,107],"words":[74,105],"identifying":[75],"location,":[76],"manner,":[77],"timing,":[78],"condition,":[80],"which":[81,371],"essential":[83],"describing":[85,163],"relations.":[87,135],"Semantic":[88],"role":[89,339],"labeling":[90],"(SRL)":[91],"a":[93,118,126,222,239,265,328,363],"technique":[97],"identifies":[99],"semantic":[101,338],"roles":[102],"these":[104],"or":[106,159],"sentences":[109],"expresses":[111],"them":[112],"predicate-argument":[114],"structures.":[115],"We":[116,259,345],"construct":[117],"SRL":[120,183,212,218,271,300,360],"system":[121,213,219],"called":[122],"BIOSMILE":[123,136],"uses":[125,221],"maximum":[127],"entropy":[128],"(ME)":[129],"machine-learning":[130],"model":[131],"to":[132,177],"extract":[133],"trained":[138,185],"on":[139,151,186],"BioProp,":[140],"our":[141],"semi-automatic,":[142],"annotated":[143],"proposition":[145,267],"bank.":[146],"Currently,":[147],"we":[148,173,305],"focusing":[150],"30":[152],"verbs":[154],"frequently":[157],"used":[158],"considered":[160],"important":[161,374],"molecular":[164],"events.":[165],"RESULTS:":[166],"To":[167],"evaluate":[168],"performance":[170,181,250,298],"BIOSMILE,":[172],"conducted":[174],"two":[175],"experiments":[176],"(1)":[178],"compare":[179],"newswire":[187,223,284],"corpora;":[190],"(2)":[192],"examine":[193],"effects":[195],"using":[197,205,264],"biomedical-specific":[198],"features.":[199],"The":[200],"experimental":[201],"results":[202],"show":[203],"BioProp":[206],"improves":[207,234],"F-score":[209,237],"by":[214,238],"21.45%":[215],"over":[216],"an":[217],"corpus.":[224],"It":[225],"noteworthy":[227],"adding":[229],"automatically":[230],"generated":[231],"template":[232],"features":[233,311],"overall":[236],"further":[240],"0.52%.":[241],"Specifically,":[242],"ArgM-LOC,":[243],"ArgM-MNR,":[244],"Arg2":[246],"achieve":[247],"statistically":[248],"significant":[249],"improvements":[251],"3.33%,":[253],"2.27%,":[254],"1.44%,":[256],"respectively.":[257],"CONCLUSION:":[258],"demonstrate":[260],"necessity":[262],"bank":[268],"training":[270,343],"domain.":[276],"Besides":[277],"different":[279],"characteristics":[280],"sentences,":[285],"factors":[286],"cross-domain":[289],"framesets":[290],"verb":[292],"usage":[293],"variations":[294],"also":[295],"influence":[296],"systems.":[301],"For":[302],"argument":[303],"classification,":[304],"find":[306],"NE":[308,353],"(named":[309],"entity)":[310],"indicating":[312],"if":[313],"target":[315],"node":[316,329],"matches":[317],"with":[318,327],"NEs":[319,324],"not":[321,336],"effective,":[322],"since":[323],"may":[325],"match":[326],"parsing":[332],"tree":[333],"does":[335],"labels":[340],"set.":[344],"therefore":[346],"templates":[348],"composed":[349],"specific":[351],"words,":[352],"types,":[354],"POS":[356],"tags":[357],"into":[358],"system.":[361],"As":[362],"result,":[364],"classification":[366],"accuracy":[367],"adjunct":[369],"arguments,":[370],"especially":[373],"SRL,":[377],"improved":[379],"significantly.":[380]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
