{"id":"https://openalex.org/W2140040278","doi":"https://doi.org/10.1186/1471-2105-8-313","title":"Integrated network reconstruction, visualization and analysis using YANAsquare","display_name":"Integrated network reconstruction, visualization and analysis using YANAsquare","publication_year":2007,"publication_date":"2007-08-28","ids":{"openalex":"https://openalex.org/W2140040278","doi":"https://doi.org/10.1186/1471-2105-8-313","mag":"2140040278","pmid":"https://pubmed.ncbi.nlm.nih.gov/17725829"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-313","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-313","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-313","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-313","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069018848","display_name":"Roland F. Schwarz","orcid":"https://orcid.org/0000-0001-9155-4268"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Roland Schwarz","raw_affiliation_strings":["Department of Bioinformatics, Biocenter Am Hubland, D-97074 University of W\u00fcrzburg, Germany. roland.schwarz@biozentrum.uni-wuerzburg.de","Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, , Germany"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Biocenter Am Hubland, D-97074 University of W\u00fcrzburg, Germany. roland.schwarz@biozentrum.uni-wuerzburg.de","institution_ids":["https://openalex.org/I25974101"]},{"raw_affiliation_string":"Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, , Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008078406","display_name":"Chunguang Liang","orcid":"https://orcid.org/0000-0002-0305-2522"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Chunguang Liang","raw_affiliation_strings":["Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, D-97074, Germany","Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, , Germany"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, D-97074, Germany","institution_ids":["https://openalex.org/I25974101"]},{"raw_affiliation_string":"Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, , Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073977487","display_name":"Christoph Kaleta","orcid":"https://orcid.org/0000-0001-8004-9514"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Kaleta","raw_affiliation_strings":["Bio Systems Analysis Group, Department of Mathematics and Computer Science, Friedrich Schiller University Jena, Germany","Bio Systems Analysis Group, Department of Mathematics and Computer Science, Friedrich Schiller University Jena, , Germany"],"affiliations":[{"raw_affiliation_string":"Bio Systems Analysis Group, Department of Mathematics and Computer Science, Friedrich Schiller University Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Bio Systems Analysis Group, Department of Mathematics and Computer Science, Friedrich Schiller University Jena, , Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002390547","display_name":"Mark K\u00fchnel","orcid":"https://orcid.org/0000-0003-3558-2576"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mark K\u00fchnel","raw_affiliation_strings":["Cell Biology Program, EMBL Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Cell Biology Program, EMBL Heidelberg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082182116","display_name":"Eik Hoffmann","orcid":"https://orcid.org/0000-0003-4224-1091"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Eik Hoffmann","raw_affiliation_strings":["Department of Cell Biology and Biosystems Technology, University of Rostock, Albert-Einstein-Str. 3, D-18059, Germany","Department of Cell Biology and Biosystems Technology, University of Rostock, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Cell Biology and Biosystems Technology, University of Rostock, Albert-Einstein-Str. 3, D-18059, Germany","institution_ids":["https://openalex.org/I4665924"]},{"raw_affiliation_string":"Department of Cell Biology and Biosystems Technology, University of Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101580443","display_name":"\u0421. \u0410. \u041a\u0443\u0437\u043d\u0435\u0446\u043e\u0432","orcid":"https://orcid.org/0000-0002-1627-8125"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sergei Kuznetsov","raw_affiliation_strings":["Department of Cell Biology and Biosystems Technology, University of Rostock, Albert-Einstein-Str. 3, D-18059, Germany","Department of Cell Biology and Biosystems Technology, University of Rostock, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Cell Biology and Biosystems Technology, University of Rostock, Albert-Einstein-Str. 3, D-18059, Germany","institution_ids":["https://openalex.org/I4665924"]},{"raw_affiliation_string":"Department of Cell Biology and Biosystems Technology, University of Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111937051","display_name":"Michael Hecker","orcid":null},"institutions":[{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Hecker","raw_affiliation_strings":["Institute for Microbiology, University of Greifswald, Friedrich-Ludwig-Jahn-Str. 15, D-17487, Germany","Institute for Microbiology, University of Greifswald, , Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, University of Greifswald, Friedrich-Ludwig-Jahn-Str. 15, D-17487, Germany","institution_ids":["https://openalex.org/I36522303"]},{"raw_affiliation_string":"Institute for Microbiology, University of Greifswald, , Germany","institution_ids":["https://openalex.org/I36522303"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101473422","display_name":"Gareth Griffiths","orcid":"https://orcid.org/0000-0002-8731-9342"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gareth Griffiths","raw_affiliation_strings":["Cell Biology Program, EMBL Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Cell Biology Program, EMBL Heidelberg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101433039","display_name":"Stefan Schuster","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107832","display_name":"Ernst Abbe University of Applied Sciences Jena","ror":"https://ror.org/01rfnc002","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210107832"]},{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Schuster","raw_affiliation_strings":["Department of Bioinformatics, University of Jena, Ernst-Abbe-Platz 2, D-07743, Germany","Dept of Bioinformatics, University of Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, University of Jena, Ernst-Abbe-Platz 2, D-07743, Germany","institution_ids":["https://openalex.org/I4210107832"]},{"raw_affiliation_string":"Dept of Bioinformatics, University of Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086202312","display_name":"Thomas Dandekar","orcid":"https://orcid.org/0000-0003-1886-7625"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Thomas Dandekar","raw_affiliation_strings":["Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, D-97074, Germany","Structural and Computational Biology, EMBL Heidelberg, Germany","Structural and Computational Biology, EMBL Heidelberg, , Germany","Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, D-97074, Germany","institution_ids":["https://openalex.org/I25974101"]},{"raw_affiliation_string":"Structural and Computational Biology, EMBL Heidelberg, Germany","institution_ids":[]},{"raw_affiliation_string":"Structural and Computational Biology, EMBL Heidelberg, , Germany","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Department of Bioinformatics, Biocenter Am Hubland, University of W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5069018848"],"corresponding_institution_ids":["https://openalex.org/I25974101"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.8236,"has_fulltext":true,"cited_by_count":72,"citation_normalized_percentile":{"value":0.91014452,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"313","last_page":"313"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.7940908670425415},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7119023203849792},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6782841086387634},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6278244256973267},{"id":"https://openalex.org/keywords/flux-balance-analysis","display_name":"Flux balance analysis","score":0.5565394163131714},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5378161668777466},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.502676248550415},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.47636696696281433},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.41841238737106323},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3483097553253174},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.31329604983329773},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20510801672935486},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17342036962509155},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14100930094718933},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11743921041488647}],"concepts":[{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.7940908670425415},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7119023203849792},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6782841086387634},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6278244256973267},{"id":"https://openalex.org/C167091322","wikidata":"https://www.wikidata.org/wiki/Q5463029","display_name":"Flux balance analysis","level":2,"score":0.5565394163131714},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5378161668777466},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.502676248550415},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.47636696696281433},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.41841238737106323},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3483097553253174},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31329604983329773},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20510801672935486},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17342036962509155},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14100930094718933},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11743921041488647},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-8-313","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-313","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-313","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17725829","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17725829","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:edoc.mdc-berlin.de:16101","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:fa35de3b8dcb4e42bca08971656f46cd","is_oa":true,"landing_page_url":"https://doaj.org/article/fa35de3b8dcb4e42bca08971656f46cd","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 313 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2020486","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2020486","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-313","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-313","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-313","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1801209705","display_name":null,"funder_award_id":"KU1528/2","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G2313231964","display_name":null,"funder_award_id":"SFB 688","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140040278.pdf","grobid_xml":"https://content.openalex.org/works/W2140040278.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1495660511","https://openalex.org/W1543388089","https://openalex.org/W1595961914","https://openalex.org/W1621975707","https://openalex.org/W1757722203","https://openalex.org/W1758395617","https://openalex.org/W1963861745","https://openalex.org/W1964287788","https://openalex.org/W1964491374","https://openalex.org/W1986467925","https://openalex.org/W1994656497","https://openalex.org/W1994896583","https://openalex.org/W2010579377","https://openalex.org/W2021767817","https://openalex.org/W2026089579","https://openalex.org/W2033976902","https://openalex.org/W2087928503","https://openalex.org/W2094097101","https://openalex.org/W2099039198","https://openalex.org/W2102653059","https://openalex.org/W2110845902","https://openalex.org/W2111973517","https://openalex.org/W2114552376","https://openalex.org/W2124926885","https://openalex.org/W2131178894","https://openalex.org/W2142237411","https://openalex.org/W2158069895","https://openalex.org/W2159299078","https://openalex.org/W2163855763","https://openalex.org/W2164904029","https://openalex.org/W2166927282","https://openalex.org/W2170739315","https://openalex.org/W3102310679"],"related_works":["https://openalex.org/W1999460937","https://openalex.org/W2083413061","https://openalex.org/W1984242440","https://openalex.org/W2113329733","https://openalex.org/W1983989854","https://openalex.org/W2886446279","https://openalex.org/W832244386","https://openalex.org/W2268207315","https://openalex.org/W2416161358","https://openalex.org/W3211329625"],"abstract_inverted_index":{"YANAsquare":[0],"is":[1],"an":[2],"application":[3],"software":[4],"for":[5],"rapid":[6],"setup,":[7],"visualization":[8],"and":[9,14],"analysis":[10],"of":[11],"small,":[12],"larger":[13],"genome-scale":[15],"metabolic":[16],"networks.":[17]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
