{"id":"https://openalex.org/W1973626596","doi":"https://doi.org/10.1186/1471-2105-8-284","title":"Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach","display_name":"Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach","publication_year":2007,"publication_date":"2007-08-03","ids":{"openalex":"https://openalex.org/W1973626596","doi":"https://doi.org/10.1186/1471-2105-8-284","mag":"1973626596","pmid":"https://pubmed.ncbi.nlm.nih.gov/17683567"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-284","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-284","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-284","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"conference-abstract","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-284","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045214155","display_name":"Carson M. Andorf","orcid":"https://orcid.org/0000-0003-2380-6704"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carson Andorf","raw_affiliation_strings":["Artificial Intelligence Laboratory, Department of Computer Science, Iowa State University, Ames, Iowa, 50011, USA","Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, Iowa, 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, Department of Computer Science, Iowa State University, Ames, Iowa, 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, Iowa, 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074103258","display_name":"Drena Dobbs","orcid":"https://orcid.org/0000-0003-4404-9554"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Drena Dobbs","raw_affiliation_strings":["Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, Iowa, 50011, USA","Center for Computational Intelligence, Learning, and Discovery, Iowa State University, Ames, Iowa, 50011, USA","Department of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa, 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, Iowa, 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Center for Computational Intelligence, Learning, and Discovery, Iowa State University, Ames, Iowa, 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa, 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004737962","display_name":"Vasant Honavar","orcid":"https://orcid.org/0000-0001-5399-3489"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vasant Honavar","raw_affiliation_strings":["Artificial Intelligence Laboratory, Department of Computer Science, Iowa State University, Ames, Iowa, 50011, USA","Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, Iowa, 50011, USA","Center for Computational Intelligence, Learning, and Discovery, Iowa State University, Ames, Iowa, 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, Department of Computer Science, Iowa State University, Ames, Iowa, 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, Iowa, 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Center for Computational Intelligence, Learning, and Discovery, Iowa State University, Ames, Iowa, 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5004737962"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":null,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"8","issue":"1","first_page":"284","last_page":"284"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7907000184059143,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7907000184059143,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.17069999873638153,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.010599999688565731,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8476027250289917},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8226027488708496},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6940649747848511},{"id":"https://openalex.org/keywords/kinome","display_name":"Kinome","score":0.5809722542762756},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.49536383152008057},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.489714652299881},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4793134927749634},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.4792451858520508},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4382338523864746},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.431379497051239},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.4188387393951416},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4114706516265869},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3775798976421356},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.360024631023407},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.35153234004974365},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2710869312286377},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24664995074272156},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14567121863365173},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13357967138290405},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12601274251937866}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8476027250289917},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8226027488708496},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6940649747848511},{"id":"https://openalex.org/C54174078","wikidata":"https://www.wikidata.org/wiki/Q3197188","display_name":"Kinome","level":3,"score":0.5809722542762756},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.49536383152008057},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.489714652299881},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4793134927749634},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.4792451858520508},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4382338523864746},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.431379497051239},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.4188387393951416},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4114706516265869},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3775798976421356},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.360024631023407},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.35153234004974365},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2710869312286377},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24664995074272156},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14567121863365173},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13357967138290405},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12601274251937866}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-8-284","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-284","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-284","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17683567","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17683567","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1994202","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1994202","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:lib.dr.iastate.edu:gdcb_las_pubs-1107","is_oa":true,"landing_page_url":"https://lib.dr.iastate.edu/gdcb_las_pubs/102","pdf_url":null,"source":{"id":"https://openalex.org/S4377196104","display_name":"Iowa State University Digital Repository (Iowa State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173911158","host_organization_name":"Iowa State University","host_organization_lineage":["https://openalex.org/I173911158"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genetics, Development and Cell Biology Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:851e0084572c420f96e6500863a7301c","is_oa":true,"landing_page_url":"https://doaj.org/article/851e0084572c420f96e6500863a7301c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 284 (2007)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-284","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-284","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-284","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1222465833","display_name":null,"funder_award_id":"R21GM066387","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1563226350","display_name":"ITR:  Algorithms and Software for Knowledge Acquisition  from Heterogeneous Distributed Data","funder_award_id":"0219699","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2296982746","display_name":"Discovery of Protein Seq.Struct.Func.Relationships","funder_award_id":"5r33gm066387-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4593153574","display_name":null,"funder_award_id":"R33GM066387","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5686942857","display_name":null,"funder_award_id":"GM 066387","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8955459229","display_name":"IGERT: Computational Molecular Biology Training Group","funder_award_id":"9972653","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"},{"id":"https://openalex.org/F4320332688","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337368","display_name":"Division of Graduate Education","ror":"https://ror.org/00whkrf32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1973626596.pdf","grobid_xml":"https://content.openalex.org/works/W1973626596.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W193142705","https://openalex.org/W1498183065","https://openalex.org/W1504694836","https://openalex.org/W1513861746","https://openalex.org/W1517588910","https://openalex.org/W1533936090","https://openalex.org/W1544089433","https://openalex.org/W1554219991","https://openalex.org/W1559908473","https://openalex.org/W1570448133","https://openalex.org/W1700503930","https://openalex.org/W1963867239","https://openalex.org/W1977224551","https://openalex.org/W1985307298","https://openalex.org/W1986234964","https://openalex.org/W1986640734","https://openalex.org/W1988298690","https://openalex.org/W1995407213","https://openalex.org/W1996351562","https://openalex.org/W2011025549","https://openalex.org/W2025316432","https://openalex.org/W2036792999","https://openalex.org/W2042210880","https://openalex.org/W2057885377","https://openalex.org/W2098740506","https://openalex.org/W2103017472","https://openalex.org/W2104878392","https://openalex.org/W2107251251","https://openalex.org/W2113071946","https://openalex.org/W2123858481","https://openalex.org/W2125055259","https://openalex.org/W2127464112","https://openalex.org/W2135140174","https://openalex.org/W2135893370","https://openalex.org/W2136890152","https://openalex.org/W2141356165","https://openalex.org/W2143738293","https://openalex.org/W2146241755","https://openalex.org/W2150926065","https://openalex.org/W2155440340","https://openalex.org/W2158714788","https://openalex.org/W2161062388","https://openalex.org/W2164565068","https://openalex.org/W2167318540","https://openalex.org/W2911731670","https://openalex.org/W2914218031","https://openalex.org/W4231824804","https://openalex.org/W4252706339","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2584555069","https://openalex.org/W2736211009","https://openalex.org/W4280644273","https://openalex.org/W2771582859","https://openalex.org/W3109006384","https://openalex.org/W2108491719","https://openalex.org/W2807567459","https://openalex.org/W3107443535","https://openalex.org/W2790515430","https://openalex.org/W2952660917"],"abstract_inverted_index":{"BACKGROUND:":[0],"Incorrectly":[1],"annotated":[2,77],"sequence":[3],"data":[4],"are":[5],"becoming":[6],"more":[7],"commonplace":[8],"as":[9,128,130],"databases":[10],"increasingly":[11],"rely":[12],"on":[13],"automated":[14],"techniques":[15],"for":[16,24,27,134],"annotation.":[17],"Hence,":[18],"there":[19],"is":[20],"an":[21],"urgent":[22],"need":[23],"computational":[25],"methods":[26],"checking":[28],"consistency":[29],"of":[30,36,74,85,108,124,149],"such":[31],"annotations":[32,88,111,123,133,152,175],"against":[33],"independent":[34],"sources":[35],"evidence":[37],"and":[38,156],"detecting":[39],"potential":[40,66,171],"annotation":[41,68,180],"errors.":[42,69],"We":[43,145],"show":[44],"how":[45],"a":[46,54,72,114],"machine":[47,115,160],"learning":[48,116,161],"approach":[49,117,162],"designed":[50],"to":[51,64,93,101,169,199],"automatically":[52],"predict":[53],"protein's":[55],"Gene":[56],"Ontology":[57],"(GO)":[58],"functional":[59],"class":[60],"can":[61],"be":[62,94,166],"employed":[63],"identify":[65],"gene":[67,179],"RESULTS:":[70],"In":[71,105],"set":[73],"211":[75],"previously":[76],"mouse":[78,136],"protein":[79,137],"kinases,":[80],"we":[81],"found":[82],"that":[83,147,158],"201":[84],"the":[86,97,109,121,125,140,159,186,205],"GO":[87,174],"returned":[89],"by":[90,177],"AmiGO":[91],"appear":[92],"inconsistent":[95],"with":[96,120,131],"UniProt":[98,122],"functions":[99],"assigned":[100],"their":[102,197],"human":[103,126],"counterparts.":[104],"contrast,":[106],"97%":[107],"predicted":[110,151],"generated":[112,176],"using":[113],"were":[118],"consistent":[119],"counterparts,":[127],"well":[129],"available":[132],"these":[135],"kinases":[138],"in":[139,173],"Mouse":[141],"Kinome":[142],"database.":[143],"CONCLUSION:":[144],"conjecture":[146],"most":[148],"our":[150],"are,":[153],"therefore,":[154],"correct":[155],"suggest":[157],"developed":[163],"here":[164],"could":[165],"routinely":[167],"used":[168],"detect":[170],"errors":[172],"high-throughput":[178],"projects.":[181],"Editors":[182],"Note:":[183],"Authors":[184],"from":[185],"original":[187],"publication":[188],"(Okazaki":[189],"et":[190,201],"al.:":[191],"Nature":[192],"2002,":[193],"420:563-73)":[194],"have":[195],"provided":[196],"response":[198],"Andorf":[200],"al,":[202],"directly":[203],"following":[204],"correspondence.":[206]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-19T15:00:24.278416","created_date":"2025-10-10T00:00:00"}
