{"id":"https://openalex.org/W2107273620","doi":"https://doi.org/10.1186/1471-2105-8-283","title":"Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data","display_name":"Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data","publication_year":2007,"publication_date":"2007-08-03","ids":{"openalex":"https://openalex.org/W2107273620","doi":"https://doi.org/10.1186/1471-2105-8-283","mag":"2107273620"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-283","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-283","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-283","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-283","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100776469","display_name":"Xiangdong Liu","orcid":"https://orcid.org/0000-0001-8778-6699"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiangdong Liu","raw_affiliation_strings":["Department of Environmental Health, University of Cincinnati, 3223 Eden Ave. ML 56, Cincinnati, Ohio, 45267, USA","Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, 45229, USA","Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, USA","Department of Environmental Health, University of Cincinnati, Cincinnati, USA"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Health, University of Cincinnati, 3223 Eden Ave. ML 56, Cincinnati, Ohio, 45267, USA","institution_ids":["https://openalex.org/I63135867"]},{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, 45229, USA","institution_ids":["https://openalex.org/I1285204247"]},{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, USA","institution_ids":["https://openalex.org/I1285204247"]},{"raw_affiliation_string":"Department of Environmental Health, University of Cincinnati, Cincinnati, USA","institution_ids":["https://openalex.org/I63135867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033341714","display_name":"Walter J. Jessen","orcid":"https://orcid.org/0000-0003-3840-4337"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Walter J Jessen","raw_affiliation_strings":["Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, 45229, USA","Division of Biomedical Informatics, Cincinnati Children\u2019s Hospital Medical Center, Cincinnati, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, 45229, USA","institution_ids":["https://openalex.org/I1285204247"]},{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children\u2019s Hospital Medical Center, Cincinnati, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002224386","display_name":"Siva Sivaganesan","orcid":null},"institutions":[{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siva Sivaganesan","raw_affiliation_strings":["Mathematical Sciences Department, University of Cincinnati, Cincinnati, OH, 45221, USA","Mathematical Sciences Department, University of Cincinnati, Cincinnati, USA"],"affiliations":[{"raw_affiliation_string":"Mathematical Sciences Department, University of Cincinnati, Cincinnati, OH, 45221, USA","institution_ids":["https://openalex.org/I63135867"]},{"raw_affiliation_string":"Mathematical Sciences Department, University of Cincinnati, Cincinnati, USA","institution_ids":["https://openalex.org/I63135867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064856328","display_name":"Bruce J. Aronow","orcid":"https://orcid.org/0000-0001-5109-6514"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bruce J Aronow","raw_affiliation_strings":["Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, 45229, USA","Division of Biomedical Informatics, Cincinnati Children\u2019s Hospital Medical Center, Cincinnati, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, 45229, USA","institution_ids":["https://openalex.org/I1285204247"]},{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children\u2019s Hospital Medical Center, Cincinnati, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057856712","display_name":"Mario Medvedovic","orcid":"https://orcid.org/0000-0003-4510-3102"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mario Medvedovic","raw_affiliation_strings":["Department of Environmental Health, University of Cincinnati, 3223 Eden Ave. ML 56, Cincinnati, Ohio, 45267, USA","Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, 45229, USA","Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, USA","Department of Environmental Health, University of Cincinnati, Cincinnati, USA"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Health, University of Cincinnati, 3223 Eden Ave. ML 56, Cincinnati, Ohio, 45267, USA","institution_ids":["https://openalex.org/I63135867"]},{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, 45229, USA","institution_ids":["https://openalex.org/I1285204247"]},{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, USA","institution_ids":["https://openalex.org/I1285204247"]},{"raw_affiliation_string":"Department of Environmental Health, University of Cincinnati, Cincinnati, USA","institution_ids":["https://openalex.org/I63135867"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100776469"],"corresponding_institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.0096,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.86230394,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"8","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6702858805656433},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6566406488418579},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5622936487197876},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5006179809570312},{"id":"https://openalex.org/keywords/chip","display_name":"Chip","score":0.49422338604927063},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.4350179135799408},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4182392656803131},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.4125812351703644},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3151952028274536},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2772405743598938},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2540953755378723},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2209181785583496},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14752578735351562}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6702858805656433},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6566406488418579},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5622936487197876},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5006179809570312},{"id":"https://openalex.org/C165005293","wikidata":"https://www.wikidata.org/wiki/Q1074500","display_name":"Chip","level":2,"score":0.49422338604927063},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.4350179135799408},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4182392656803131},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.4125812351703644},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3151952028274536},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2772405743598938},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2540953755378723},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2209181785583496},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14752578735351562},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-8-283","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-283","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-283","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:4bdb472a204e4ead910d72ef6ff4ce7f","is_oa":true,"landing_page_url":"https://doaj.org/article/4bdb472a204e4ead910d72ef6ff4ce7f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 283 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1994961","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1994961","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-283","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-283","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-283","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2107273620.pdf","grobid_xml":"https://content.openalex.org/works/W2107273620.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1502936039","https://openalex.org/W1513501940","https://openalex.org/W1513861746","https://openalex.org/W1517816201","https://openalex.org/W1521448744","https://openalex.org/W1866466380","https://openalex.org/W1872596602","https://openalex.org/W1872619067","https://openalex.org/W1973635919","https://openalex.org/W1991040778","https://openalex.org/W1991069455","https://openalex.org/W1993751571","https://openalex.org/W1998413580","https://openalex.org/W2009525432","https://openalex.org/W2019486793","https://openalex.org/W2039524523","https://openalex.org/W2045656233","https://openalex.org/W2046440396","https://openalex.org/W2049221143","https://openalex.org/W2053126761","https://openalex.org/W2055842970","https://openalex.org/W2056002855","https://openalex.org/W2063389953","https://openalex.org/W2065458745","https://openalex.org/W2080498142","https://openalex.org/W2083875149","https://openalex.org/W2087101057","https://openalex.org/W2090654939","https://openalex.org/W2094923559","https://openalex.org/W2096286842","https://openalex.org/W2097090208","https://openalex.org/W2098216772","https://openalex.org/W2099189600","https://openalex.org/W2102616519","https://openalex.org/W2102971075","https://openalex.org/W2103017472","https://openalex.org/W2103453943","https://openalex.org/W2107451370","https://openalex.org/W2108420379","https://openalex.org/W2112821758","https://openalex.org/W2118628540","https://openalex.org/W2120636621","https://openalex.org/W2126449841","https://openalex.org/W2126602684","https://openalex.org/W2127536416","https://openalex.org/W2135951244","https://openalex.org/W2136164217","https://openalex.org/W2137683543","https://openalex.org/W2139947030","https://openalex.org/W2140115103","https://openalex.org/W2140176439","https://openalex.org/W2142237411","https://openalex.org/W2142460132","https://openalex.org/W2142544085","https://openalex.org/W2143274936","https://openalex.org/W2144036800","https://openalex.org/W2150473224","https://openalex.org/W2154022964","https://openalex.org/W2154475586","https://openalex.org/W2156273110","https://openalex.org/W2156465196","https://openalex.org/W2157088135","https://openalex.org/W2164893466","https://openalex.org/W2165011536","https://openalex.org/W2167190345","https://openalex.org/W2479972460","https://openalex.org/W2492794003","https://openalex.org/W2744744159","https://openalex.org/W4211148332","https://openalex.org/W4232383088","https://openalex.org/W4246030391","https://openalex.org/W4248318091"],"related_works":["https://openalex.org/W2804364458","https://openalex.org/W4298130764","https://openalex.org/W2132641928","https://openalex.org/W2090259340","https://openalex.org/W4310225030","https://openalex.org/W2083665254","https://openalex.org/W2393816671","https://openalex.org/W1534720161","https://openalex.org/W1926736923","https://openalex.org/W2031502293"],"abstract_inverted_index":{"Abstract":[0],"Background":[1],"Transcriptional":[2],"modules":[3],"(TM)":[4],"consist":[5],"of":[6,8,34,52,64,108,138,179,234,253],"groups":[7],"co-regulated":[9,235],"genes":[10,236],"and":[11,26,66,80,86,98,187,215,237,250],"transcription":[12],"factors":[13],"(TF)":[14],"regulating":[15],"their":[16],"expression.":[17],"Two":[18],"high-throughput":[19],"(HT)":[20],"experimental":[21],"technologies,":[22],"gene":[23,96],"expression":[24,39,97,121,216],"microarrays":[25],"Chromatin":[27],"Immuno-Precipitation":[28],"on":[29,42],"Chip":[30],"(ChIP-chip),":[31],"are":[32],"capable":[33],"producing":[35],"data":[36,53,124,151,180,217],"informative":[37],"about":[38],"regulatory":[40,145,243,267],"mechanism":[41],"a":[43,82,260],"genome":[44],"scale.":[45],"The":[46,153,185],"optimal":[47],"approach":[48],"to":[49,118,127,142,182,240],"joint":[50,131],"modeling":[51,95,225],"generated":[54],"by":[55,93,112,149],"these":[56],"two":[57],"complementary":[58],"biological":[59],"assays,":[60],"with":[61],"the":[62,109,113,136,139,164,183,197,222,246,251,255],"goal":[63],"identifying":[65,91],"characterizing":[67],"TMs,":[68],"is":[69,194,202],"an":[70,104],"important":[71],"open":[72],"problem":[73],"in":[74,160,231],"computational":[75,88,155,257],"biomedicine.":[76],"Results":[77],"We":[78,102,133],"developed":[79],"validated":[81],"novel":[83,144],"probabilistic":[84,224],"model":[85],"related":[87],"procedure":[89,156,258],"for":[90,130,190,264],"TMs":[92,110],"jointly":[94],"ChIP-chip":[99,123,150,214],"binding":[100],"data.":[101],"demonstrate":[103,135],"improved":[105,232,238],"functional":[106],"coherence":[107],"produced":[111],"new":[114,140,154,256,262],"method":[115],"when":[116],"compared":[117],"either":[119],"analyzing":[120],"or":[122,126,162],"separately":[125],"alternative":[128],"approaches":[129],"analysis.":[132,184],"also":[134],"ability":[137,239],"algorithm":[141,193],"identify":[143],"relationships":[146],"not":[147],"revealed":[148],"alone.":[152],"can":[157],"be":[158,219],"used":[159],"more":[161],"less":[163],"same":[165],"way":[166],"as":[167],"one":[168],"would":[169],"use":[170],"simple":[171],"hierarchical":[172],"clustering":[173],"without":[174],"performing":[175],"any":[176],"special":[177],"transformation":[178],"prior":[181],"R":[186,198],"C-source":[188],"code":[189],"implementing":[191],"our":[192],"incorporated":[195],"within":[196,221],"package":[199],"gimmR":[200],"which":[201,227],"freely":[203],"available":[204],"at":[205],"http://eh3.uc.edu/gimm.":[206],"Conclusion":[207],"Our":[208],"results":[209],"indicate":[210],"that,":[211],"whenever":[212],"available,":[213],"should":[218],"analyzed":[220],"unified":[223],"framework,":[226],"will":[228],"likely":[229],"result":[230],"clusters":[233],"detect":[241],"meaningful":[242],"relationships.":[244],"Given":[245],"good":[247],"statistical":[248],"properties":[249],"ease":[252],"use,":[254],"offers":[259],"worthy":[261],"tool":[263],"reconstructing":[265],"transcriptional":[266],"networks.":[268]},"counts_by_year":[{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
