{"id":"https://openalex.org/W2030955818","doi":"https://doi.org/10.1186/1471-2105-8-174","title":"Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions","display_name":"Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions","publication_year":2007,"publication_date":"2007-05-24","ids":{"openalex":"https://openalex.org/W2030955818","doi":"https://doi.org/10.1186/1471-2105-8-174","mag":"2030955818","pmid":"https://pubmed.ncbi.nlm.nih.gov/17524134"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-174","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-174","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-174","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-174","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069341441","display_name":"Davide Cor\u00e0","orcid":"https://orcid.org/0000-0003-4123-1705"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Davide Cor\u00e0","raw_affiliation_strings":["Dept of Theoretical Physics, University of Turin and INFN, Turin, Italy. cora@to.infn.it <cora@to.infn.it>","Dept of Theoretical Physics, University of Turin and INFN, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of Theoretical Physics, University of Turin and INFN, Turin, Italy. cora@to.infn.it <cora@to.infn.it>","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Dept of Theoretical Physics, University of Turin and INFN, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023662721","display_name":"Ferdinando Di Cunto","orcid":"https://orcid.org/0000-0001-9367-6357"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ferdinando Di Cunto","raw_affiliation_strings":["Molecular Biotechnology Center and Dept. of Genetics, Biology and Biochemistry, University of Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Biotechnology Center and Dept. of Genetics, Biology and Biochemistry, University of Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031508753","display_name":"Michele Caselle","orcid":"https://orcid.org/0000-0001-5488-142X"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Michele Caselle","raw_affiliation_strings":["Dept of Theoretical Physics, University of Turin and INFN, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of Theoretical Physics, University of Turin and INFN, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063120064","display_name":"Paolo Provero","orcid":"https://orcid.org/0000-0001-8664-8630"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paolo Provero","raw_affiliation_strings":["Dept of Theoretical Physics, University of Turin and INFN, Turin, Italy","Molecular Biotechnology Center and Dept. of Genetics, Biology and Biochemistry, University of Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of Theoretical Physics, University of Turin and INFN, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Molecular Biotechnology Center and Dept. of Genetics, Biology and Biochemistry, University of Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5063120064"],"corresponding_institution_ids":["https://openalex.org/I55143463"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.4621,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.84364454,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"8","issue":"1","first_page":"174","last_page":"174"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.4147000014781952,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.4147000014781952,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.22370000183582306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.1143999993801117,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.68546462059021},{"id":"https://openalex.org/keywords/untranslated-region","display_name":"Untranslated region","score":0.6630873680114746},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6630101799964905},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6260018348693848},{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.6223990321159363},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.618939220905304},{"id":"https://openalex.org/keywords/three-prime-untranslated-region","display_name":"Three prime untranslated region","score":0.5921558141708374},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5143216848373413},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5059005618095398},{"id":"https://openalex.org/keywords/regulatory-sequence","display_name":"Regulatory sequence","score":0.44964560866355896},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.44659772515296936},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.443044513463974},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.22765961289405823},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.2124422788619995}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.68546462059021},{"id":"https://openalex.org/C89604277","wikidata":"https://www.wikidata.org/wiki/Q424345","display_name":"Untranslated region","level":4,"score":0.6630873680114746},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6630101799964905},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6260018348693848},{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.6223990321159363},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.618939220905304},{"id":"https://openalex.org/C22667442","wikidata":"https://www.wikidata.org/wiki/Q3272830","display_name":"Three prime untranslated region","level":5,"score":0.5921558141708374},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5143216848373413},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5059005618095398},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.44964560866355896},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.44659772515296936},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.443044513463974},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.22765961289405823},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.2124422788619995},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-8-174","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-174","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-174","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17524134","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17524134","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.246.3410","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.246.3410","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/0707.0394v1.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.249.9625","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.249.9625","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/0707.0394v2.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:6ea33a73f0304c75af5af780f74741e9","is_oa":true,"landing_page_url":"https://doaj.org/article/6ea33a73f0304c75af5af780f74741e9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 174 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1904458","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1904458","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-174","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-174","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-174","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2030955818.pdf","grobid_xml":"https://content.openalex.org/works/W2030955818.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W1488258440","https://openalex.org/W1570050666","https://openalex.org/W1599498186","https://openalex.org/W1973333453","https://openalex.org/W1975297840","https://openalex.org/W1975981804","https://openalex.org/W1978337436","https://openalex.org/W1980269624","https://openalex.org/W1990868443","https://openalex.org/W1992941735","https://openalex.org/W1993799748","https://openalex.org/W1994955065","https://openalex.org/W2008083733","https://openalex.org/W2009326616","https://openalex.org/W2013012788","https://openalex.org/W2014946489","https://openalex.org/W2030093783","https://openalex.org/W2032231928","https://openalex.org/W2040191060","https://openalex.org/W2040851473","https://openalex.org/W2050869737","https://openalex.org/W2071596792","https://openalex.org/W2074915514","https://openalex.org/W2082213106","https://openalex.org/W2083381199","https://openalex.org/W2085442947","https://openalex.org/W2087966784","https://openalex.org/W2088930981","https://openalex.org/W2092068185","https://openalex.org/W2092745539","https://openalex.org/W2099159538","https://openalex.org/W2105274319","https://openalex.org/W2109302137","https://openalex.org/W2112192177","https://openalex.org/W2113869362","https://openalex.org/W2117254636","https://openalex.org/W2117391818","https://openalex.org/W2117991391","https://openalex.org/W2124268899","https://openalex.org/W2124756133","https://openalex.org/W2129429612","https://openalex.org/W2133992949","https://openalex.org/W2137144878","https://openalex.org/W2138664009","https://openalex.org/W2140302584","https://openalex.org/W2152091242","https://openalex.org/W2155077792","https://openalex.org/W2160467221","https://openalex.org/W2162165765","https://openalex.org/W2163199119","https://openalex.org/W2165764599","https://openalex.org/W2168230240","https://openalex.org/W2169300762","https://openalex.org/W2172205625","https://openalex.org/W2949547177","https://openalex.org/W2953003030","https://openalex.org/W4210580032","https://openalex.org/W4250186301"],"related_works":["https://openalex.org/W2171396485","https://openalex.org/W2048404795","https://openalex.org/W2034858540","https://openalex.org/W2386767893","https://openalex.org/W2130669936","https://openalex.org/W3145919624","https://openalex.org/W4230503687","https://openalex.org/W977309228","https://openalex.org/W2050159684","https://openalex.org/W2066198055"],"abstract_inverted_index":{"BACKGROUND:":[0],"3'":[1,49,101],"untranslated":[2],"regions":[3,122],"(3'":[4],"UTRs)":[5],"contain":[6],"binding":[7,57,113],"sites":[8,58,114],"for":[9,16,59,131],"many":[10,110],"regulatory":[11,60],"elements,":[12],"and":[13,118],"in":[14,29,47,97,100,116,119],"particular":[15,120],"microRNAs":[17],"(miRNAs).":[18],"The":[19,62,82],"importance":[20],"of":[21,44,55,70,72,79,90,123],"miRNA-mediated":[22],"post-transcriptional":[23],"regulation":[24],"has":[25],"become":[26],"increasingly":[27],"clear":[28],"the":[30,41,53,68,88],"last":[31],"few":[32],"years.":[33],"RESULTS:":[34],"We":[35],"propose":[36],"two":[37],"complementary":[38],"approaches":[39],"to":[40,108],"statistical":[42],"analysis":[43],"oligonucleotide":[45],"frequencies":[46],"mammalian":[48],"UTRs":[50],"aimed":[51],"at":[52],"identification":[54,69,89],"candidate":[56],"elements.":[61],"first":[63],"method":[64,84],"is":[65,85],"based":[66,86],"on":[67,87],"sets":[71],"genes":[73],"characterized":[74],"by":[75],"evolutionarily":[76],"conserved":[77],"overrepresentation":[78],"an":[80],"oligonucleotide.":[81],"second":[83],"oligonucleotides":[91],"showing":[92],"statistically":[93],"significant":[94],"strand":[95],"asymmetry":[96],"their":[98],"distribution":[99],"UTRs.":[102],"CONCLUSION:":[103],"Both":[104],"methods":[105],"are":[106,129],"able":[107],"identify":[109],"previously":[111],"known":[112,124],"located":[115],"3'UTRs,":[117],"seed":[121],"miRNAs.":[125],"Many":[126],"new":[127],"candidates":[128],"proposed":[130],"experimental":[132],"verification.":[133]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
