{"id":"https://openalex.org/W2116900051","doi":"https://doi.org/10.1186/1471-2105-8-119","title":"Selective prediction of interaction sites in protein structures with THEMATICS","display_name":"Selective prediction of interaction sites in protein structures with THEMATICS","publication_year":2007,"publication_date":"2007-04-09","ids":{"openalex":"https://openalex.org/W2116900051","doi":"https://doi.org/10.1186/1471-2105-8-119","mag":"2116900051","pmid":"https://pubmed.ncbi.nlm.nih.gov/17419878"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-119","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-119","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-119","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-119","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054685348","display_name":"Ying Wei","orcid":"https://orcid.org/0000-0002-0943-1793"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ying Wei","raw_affiliation_strings":["Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, Massachusetts 02115, USA. wei.y@neu.edu <wei.y@neu.edu>","Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, Massachusetts 02115, USA. wei.y@neu.edu <wei.y@neu.edu>","institution_ids":["https://openalex.org/I12912129"]},{"raw_affiliation_string":"Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, USA","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113700407","display_name":"Jaeju Ko","orcid":null},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]},{"id":"https://openalex.org/I200885203","display_name":"Indiana University of Pennsylvania","ror":"https://ror.org/0511cmw96","country_code":"US","type":"education","lineage":["https://openalex.org/I200885203"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaeju Ko","raw_affiliation_strings":["Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, Massachusetts, 02115, USA","NSF-ROA awardee. Department of Chemistry, Indiana University of Pennsylvania, 975 Oakland Avenue, Indiana, Pennsylvania, 15705, USA","NSF-ROA awardee. Department of Chemistry, Indiana University of Pennsylvania, Indiana, USA","Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, Massachusetts, 02115, USA","institution_ids":["https://openalex.org/I12912129"]},{"raw_affiliation_string":"NSF-ROA awardee. Department of Chemistry, Indiana University of Pennsylvania, 975 Oakland Avenue, Indiana, Pennsylvania, 15705, USA","institution_ids":["https://openalex.org/I200885203"]},{"raw_affiliation_string":"NSF-ROA awardee. Department of Chemistry, Indiana University of Pennsylvania, Indiana, USA","institution_ids":["https://openalex.org/I200885203"]},{"raw_affiliation_string":"Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, USA","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014371827","display_name":"Leonel F. Murga","orcid":null},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]},{"id":"https://openalex.org/I6902469","display_name":"Brandeis University","ror":"https://ror.org/05abbep66","country_code":"US","type":"education","lineage":["https://openalex.org/I6902469"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonel F Murga","raw_affiliation_strings":["Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, Massachusetts, 02115, USA","Rosenstiel Basic Medical Sciences Center, Brandeis University, Waltham, MA 02454, USA","Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, USA","Rosenstiel Basic Medical Sciences Center, Brandeis University, Waltham, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, Massachusetts, 02115, USA","institution_ids":["https://openalex.org/I12912129"]},{"raw_affiliation_string":"Rosenstiel Basic Medical Sciences Center, Brandeis University, Waltham, MA 02454, USA","institution_ids":["https://openalex.org/I6902469"]},{"raw_affiliation_string":"Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, USA","institution_ids":["https://openalex.org/I12912129"]},{"raw_affiliation_string":"Rosenstiel Basic Medical Sciences Center, Brandeis University, Waltham, USA","institution_ids":["https://openalex.org/I6902469"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041030878","display_name":"Mary Jo Ondrechen","orcid":"https://orcid.org/0000-0003-2456-4313"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary Jo Ondrechen","raw_affiliation_strings":["Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, Massachusetts, 02115, USA","Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, Massachusetts, 02115, USA","institution_ids":["https://openalex.org/I12912129"]},{"raw_affiliation_string":"Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, USA","institution_ids":["https://openalex.org/I12912129"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5054685348"],"corresponding_institution_ids":["https://openalex.org/I12912129"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.0925,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.92039574,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"119","last_page":"119"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6158775687217712},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.592708945274353},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47661104798316956},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41928476095199585},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3999881148338318},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.35295480489730835},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17544645071029663},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.0774783194065094}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6158775687217712},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.592708945274353},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47661104798316956},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41928476095199585},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3999881148338318},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.35295480489730835},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17544645071029663},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0774783194065094}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-8-119","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-119","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-119","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17419878","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17419878","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:7d8d5b419c6145208594a5ce15636a99","is_oa":true,"landing_page_url":"https://doaj.org/article/7d8d5b419c6145208594a5ce15636a99","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 119 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1877815","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1877815","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-119","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-119","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-119","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3823623451","display_name":"Protein Structure-Based Prediction of Functional Information","funder_award_id":"0517292","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116900051.pdf","grobid_xml":"https://content.openalex.org/works/W2116900051.grobid-xml"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W103869972","https://openalex.org/W1488329660","https://openalex.org/W1517583229","https://openalex.org/W1522205938","https://openalex.org/W1533936090","https://openalex.org/W1561011671","https://openalex.org/W1570849744","https://openalex.org/W1575826900","https://openalex.org/W1582255757","https://openalex.org/W1585634379","https://openalex.org/W1593454066","https://openalex.org/W1964640688","https://openalex.org/W1968733906","https://openalex.org/W1976499671","https://openalex.org/W1979389134","https://openalex.org/W1984201743","https://openalex.org/W1996113142","https://openalex.org/W1998112653","https://openalex.org/W1998486888","https://openalex.org/W2015642465","https://openalex.org/W2018927787","https://openalex.org/W2020481171","https://openalex.org/W2024044281","https://openalex.org/W2024065736","https://openalex.org/W2025157967","https://openalex.org/W2027929244","https://openalex.org/W2028590095","https://openalex.org/W2032920590","https://openalex.org/W2037298322","https://openalex.org/W2039665613","https://openalex.org/W2041189078","https://openalex.org/W2043543538","https://openalex.org/W2043834796","https://openalex.org/W2043886357","https://openalex.org/W2044583213","https://openalex.org/W2044737353","https://openalex.org/W2045110975","https://openalex.org/W2052928766","https://openalex.org/W2056940848","https://openalex.org/W2064430199","https://openalex.org/W2066543173","https://openalex.org/W2069821830","https://openalex.org/W2075914095","https://openalex.org/W2077501220","https://openalex.org/W2079243965","https://openalex.org/W2081655977","https://openalex.org/W2090774487","https://openalex.org/W2094630873","https://openalex.org/W2095058079","https://openalex.org/W2102612168","https://openalex.org/W2109715166","https://openalex.org/W2112162865","https://openalex.org/W2116846654","https://openalex.org/W2117164735","https://openalex.org/W2120564439","https://openalex.org/W2122854841","https://openalex.org/W2124018463","https://openalex.org/W2125791810","https://openalex.org/W2128402268","https://openalex.org/W2128640429","https://openalex.org/W2129421547","https://openalex.org/W2133558724","https://openalex.org/W2135043797","https://openalex.org/W2137991504","https://openalex.org/W2138937052","https://openalex.org/W2139508887","https://openalex.org/W2139942857","https://openalex.org/W2143011057","https://openalex.org/W2146224808","https://openalex.org/W2151550848","https://openalex.org/W2154333184","https://openalex.org/W2155367844","https://openalex.org/W2156160283","https://openalex.org/W2160180855","https://openalex.org/W2162335096","https://openalex.org/W2169382386","https://openalex.org/W2314118227","https://openalex.org/W2768565525","https://openalex.org/W3119059448","https://openalex.org/W4231001098"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191","https://openalex.org/W2061542922"],"abstract_inverted_index":{"With":[0],"a":[1,9],"preferred":[2],"cut-off":[3],"value":[4],"of":[5,13,45,65,74],"0.99,":[6],"THEMATICS":[7,59,80],"achieves":[8],"high":[10],"success":[11],"rate":[12],"interaction":[14],"site":[15],"prediction,":[16],"about":[17,28],"86%":[18],"correct":[19,22],"or":[20],"partially":[21],"using":[23],"CatRes/CSA":[24],"annotations":[25],"only":[26,71],"and":[27,54],"93%":[29],"with":[30,50],"an":[31],"expanded":[32],"reference":[33],"set.":[34],"Success":[35],"rates":[36],"for":[37],"catalytic":[38],"residue":[39],"prediction":[40],"are":[41],"similar":[42],"to":[43],"those":[44],"other":[46],"structure-based":[47],"methods,":[48],"but":[49],"substantially":[51],"better":[52],"precision":[53],"lower":[55],"false":[56],"positive":[57],"rates.":[58],"performs":[60],"well":[61],"across":[62],"the":[63,72,75,86],"spectrum":[64],"E.C.":[66],"classes.":[67],"The":[68],"method":[69],"requires":[70],"structure":[73],"query":[76],"protein":[77],"as":[78],"input.":[79],"predictions":[81],"may":[82],"be":[83],"obtained":[84],"via":[85],"web":[87],"from":[88],"structures":[89],"in":[90],"PDB":[91],"format":[92],"at:":[93],"http://pfweb.chem.neu.edu/thematics/submit.html.":[94]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
