{"id":"https://openalex.org/W2000343446","doi":"https://doi.org/10.1186/1471-2105-8-108","title":"Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays","display_name":"Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays","publication_year":2007,"publication_date":"2007-03-29","ids":{"openalex":"https://openalex.org/W2000343446","doi":"https://doi.org/10.1186/1471-2105-8-108","mag":"2000343446","pmid":"https://pubmed.ncbi.nlm.nih.gov/17394657"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-8-108","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-108","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-108","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-108","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104021883","display_name":"Jun Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210090567","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210090567"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Lu","raw_affiliation_strings":["Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, MD 20892 USA. lujun@mail.nih.gov <lujun@mail.nih.gov>","Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, MD 20892 USA. lujun@mail.nih.gov <lujun@mail.nih.gov>","institution_ids":["https://openalex.org/I4210090567"]},{"raw_affiliation_string":"Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073478777","display_name":"Joseph C. Lee","orcid":"https://orcid.org/0000-0002-7683-8825"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210090567","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210090567"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph C Lee","raw_affiliation_strings":["Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892, USA","Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892, USA","institution_ids":["https://openalex.org/I4210090567","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091471463","display_name":"Marc Salit","orcid":"https://orcid.org/0000-0003-1624-5195"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc L Salit","raw_affiliation_strings":["Chemical Science and Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, 20899, USA","Chemical Science and Technology Laboratory National Institute of Standards and Technology, Gaithersburg, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chemical Science and Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, 20899, USA","institution_ids":["https://openalex.org/I1321296531"]},{"raw_affiliation_string":"Chemical Science and Technology Laboratory National Institute of Standards and Technology, Gaithersburg, USA","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024308096","display_name":"Margaret C. Cam","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210090567","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210090567"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Margaret C Cam","raw_affiliation_strings":["Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892, USA","Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892, USA","institution_ids":["https://openalex.org/I4210090567","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Genomics Core Laboratory, National Institute of Diabetes & Digestive & Kidney Diseases, National Institutes of Health, Bethesda, USA","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.307,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.95027628,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"108","last_page":"108"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9699000120162964,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9699000120162964,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.013500000350177288,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.8563203811645508},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.732576310634613},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6754451990127563},{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.6615644693374634},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6208907961845398},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5625991821289062},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5021851062774658},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44977378845214844},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.44896602630615234},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.43804556131362915},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37687596678733826},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3316657543182373},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2601812481880188},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23523154854774475},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19295337796211243},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19221779704093933},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.15020498633384705}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.8563203811645508},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.732576310634613},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6754451990127563},{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.6615644693374634},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6208907961845398},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5625991821289062},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5021851062774658},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44977378845214844},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.44896602630615234},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.43804556131362915},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37687596678733826},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3316657543182373},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2601812481880188},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23523154854774475},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19295337796211243},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19221779704093933},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.15020498633384705},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-8-108","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-108","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-108","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17394657","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17394657","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:4eccb83cb49d4867b666a7d4c0452152","is_oa":false,"landing_page_url":"https://doaj.org/article/4eccb83cb49d4867b666a7d4c0452152","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 8, Iss 1, p 108 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1853115","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1853115","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-8-108","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-8-108","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-8-108","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332178","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2000343446.pdf","grobid_xml":"https://content.openalex.org/works/W2000343446.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W610729782","https://openalex.org/W1484872771","https://openalex.org/W1805019014","https://openalex.org/W1869957243","https://openalex.org/W2037500862","https://openalex.org/W2038437697","https://openalex.org/W2069271664","https://openalex.org/W2070491426","https://openalex.org/W2081098333","https://openalex.org/W2084281896","https://openalex.org/W2095907724","https://openalex.org/W2096998479","https://openalex.org/W2100639130","https://openalex.org/W2107903949","https://openalex.org/W2108097749","https://openalex.org/W2109972881","https://openalex.org/W2114049512","https://openalex.org/W2116634113","https://openalex.org/W2119274294","https://openalex.org/W2130301347","https://openalex.org/W2130494035","https://openalex.org/W2131320300","https://openalex.org/W2132561013","https://openalex.org/W2135827569","https://openalex.org/W2141009231","https://openalex.org/W2143364665","https://openalex.org/W2143953211","https://openalex.org/W2159373567","https://openalex.org/W2160697532","https://openalex.org/W2161689514","https://openalex.org/W2170989872","https://openalex.org/W2247766769","https://openalex.org/W2504441500","https://openalex.org/W4230932396","https://openalex.org/W4247420482"],"related_works":["https://openalex.org/W4309242670","https://openalex.org/W1965530278","https://openalex.org/W2523875478","https://openalex.org/W3156936474","https://openalex.org/W2140099276","https://openalex.org/W2173849841","https://openalex.org/W4233863423","https://openalex.org/W2032717553","https://openalex.org/W2146014453","https://openalex.org/W90653389"],"abstract_inverted_index":{"BACKGROUND:":[0],"Extracting":[1],"biological":[2],"information":[3],"from":[4],"high-density":[5],"Affymetrix":[6,25,155,226],"arrays":[7],"is":[8,109,194],"a":[9,45,69,81,86,102,178,185],"multi-step":[10],"process":[11],"that":[12,101,118,143,221],"begins":[13],"with":[14,224],"the":[15,23,53,120,153],"accurate":[16],"annotation":[17,27,213],"of":[18,62,89,107,149],"microarray":[19],"probes.":[20],"Shortfalls":[21],"in":[22,76,80,177],"original":[24,154],"probe":[26,71,79,82,104,122,150,159,218],"have":[28,34,51,207],"been":[29],"described;":[30],"however,":[31],"few":[32],"studies":[33],"provided":[35],"rigorous":[36],"solutions":[37],"for":[38,111,201,215],"routine":[39],"data":[40,97],"analysis.":[41],"RESULTS:":[42],"Using":[43],"AceView,":[44],"comprehensive":[46],"human":[47],"transcript":[48,128],"database,":[49],"we":[50,99,170,206],"reannotated":[52],"probes":[54],"by":[55],"matching":[56],"them":[57],"to":[58,85,131,196],"RNA":[59],"transcripts":[60,190],"instead":[61],"genes.":[63],"Based":[64],"on":[65],"this":[66],"transcript-level":[67,145,174],"annotation,":[68],"new":[70,121,217],"set":[72,83,88,105,123,219],"definition":[73,124],"was":[74],"created":[75,208],"which":[77,188],"every":[78],"maps":[84],"common":[87],"AceView":[90],"gene":[91],"transcripts.":[92],"In":[93],"addition,":[94],"using":[95,172],"artificial":[96],"sets":[98,151,160],"identified":[100],"minimal":[103],"size":[106],"4":[108],"necessary":[110],"reliable":[112,166],"statistical":[113,167],"summarization.":[114],"We":[115,141],"further":[116],"demonstrate":[117],"applying":[119],"can":[125],"detect":[126],"specific":[127,189],"variants":[129],"contributing":[130],"differential":[132],"expression":[133],"and":[134,147,212],"it":[135],"also":[136],"improves":[137],"cross-platform":[138],"concordance.":[139],"CONCLUSION:":[140],"conclude":[142],"our":[144,173,216],"reannotation":[146],"redefinition":[148,176],"complement":[152],"design.":[156],"Redefinitions":[157],"introduce":[158],"whose":[161],"sizes":[162],"may":[163],"not":[164],"support":[165],"summarization;":[168],"therefore,":[169],"advocate":[171],"mapping":[175],"secondary":[179],"analysis":[180],"step":[181],"rather":[182],"than":[183],"as":[184],"replacement.":[186],"Knowing":[187],"are":[191,222],"differentially":[192],"expressed":[193],"important":[195],"properly":[197],"design":[198],"probe/primer":[199],"pairs":[200],"validation":[202],"purposes.":[203],"For":[204],"convenience,":[205],"custom":[209],"chip-description-files":[210],"(CDFs)":[211],"files":[214],"definitions":[220],"compatible":[223],"Bioconductor,":[225],"Expression":[227],"Console":[228],"or":[229],"third":[230],"party":[231],"software.":[232]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":6}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}