{"id":"https://openalex.org/W2060460012","doi":"https://doi.org/10.1186/1471-2105-7-s5-s19","title":"An evaluation of human protein-protein interaction data in the public domain","display_name":"An evaluation of human protein-protein interaction data in the public domain","publication_year":2006,"publication_date":"2006-12-01","ids":{"openalex":"https://openalex.org/W2060460012","doi":"https://doi.org/10.1186/1471-2105-7-s5-s19","mag":"2060460012","pmid":"https://pubmed.ncbi.nlm.nih.gov/17254303"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-s5-s19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-s5-s19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-S5-S19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-S5-S19","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066701356","display_name":"Suresh Mathivanan","orcid":"https://orcid.org/0000-0002-7290-5795"},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Suresh Mathivanan","raw_affiliation_strings":["Institute of Bioinformatics, International Technology Park, Bangalore, India. suresh@jhmi.edu","Institute of Bioinformatics, International Technology Park, Bangalore, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, International Technology Park, Bangalore, India. suresh@jhmi.edu","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Institute of Bioinformatics, International Technology Park, Bangalore, India","institution_ids":["https://openalex.org/I4210148697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073418609","display_name":"Balamurugan Periaswamy","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I178319760","display_name":"Kuvempu University","ror":"https://ror.org/014arsg56","country_code":"IN","type":"education","lineage":["https://openalex.org/I178319760"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Balamurugan Periaswamy","raw_affiliation_strings":["Department of Biotechnology, Kuvempu University, Shankaraghatta, Karnataka, India","Institute of Bioinformatics, International Technology Park, Bangalore, India","McKusick-Nathans Institute of Genetic Medicine and the Departments of Biological Chemistry, Pathology and Oncology, Johns Hopkins University, Baltimore, MD, 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Kuvempu University, Shankaraghatta, Karnataka, India","institution_ids":["https://openalex.org/I178319760"]},{"raw_affiliation_string":"Institute of Bioinformatics, International Technology Park, Bangalore, India","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"McKusick-Nathans Institute of Genetic Medicine and the Departments of Biological Chemistry, Pathology and Oncology, Johns Hopkins University, Baltimore, MD, 21205, USA","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103492661","display_name":"TKB Gandhi","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"TKB Gandhi","raw_affiliation_strings":["Institute of Bioinformatics, International Technology Park, Bangalore, India","McKusick-Nathans Institute of Genetic Medicine and the Departments of Biological Chemistry, Pathology and Oncology, Johns Hopkins University, Baltimore, MD, 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, International Technology Park, Bangalore, India","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"McKusick-Nathans Institute of Genetic Medicine and the Departments of Biological Chemistry, Pathology and Oncology, Johns Hopkins University, Baltimore, MD, 21205, USA","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103455101","display_name":"Kumaran Kandasamy","orcid":null},"institutions":[{"id":"https://openalex.org/I178319760","display_name":"Kuvempu University","ror":"https://ror.org/014arsg56","country_code":"IN","type":"education","lineage":["https://openalex.org/I178319760"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Kumaran Kandasamy","raw_affiliation_strings":["Department of Biotechnology, Kuvempu University, Shankaraghatta, Karnataka, India","Institute of Bioinformatics, International Technology Park, Bangalore, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Kuvempu University, Shankaraghatta, Karnataka, India","institution_ids":["https://openalex.org/I178319760"]},{"raw_affiliation_string":"Institute of Bioinformatics, International Technology Park, Bangalore, India","institution_ids":["https://openalex.org/I4210148697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109556608","display_name":"Shubha Suresh","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Shubha Suresh","raw_affiliation_strings":["Institute of Bioinformatics, International Technology Park, Bangalore, India","McKusick-Nathans Institute of Genetic Medicine and the Departments of Biological Chemistry, Pathology and Oncology, Johns Hopkins University, Baltimore, MD, 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, International Technology Park, Bangalore, India","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"McKusick-Nathans Institute of Genetic Medicine and the Departments of Biological Chemistry, Pathology and Oncology, Johns Hopkins University, Baltimore, MD, 21205, USA","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027317658","display_name":"Riaz Mohmood","orcid":null},"institutions":[{"id":"https://openalex.org/I178319760","display_name":"Kuvempu University","ror":"https://ror.org/014arsg56","country_code":"IN","type":"education","lineage":["https://openalex.org/I178319760"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Riaz Mohmood","raw_affiliation_strings":["Department of Biotechnology, Kuvempu University, Shankaraghatta, Karnataka, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Kuvempu University, Shankaraghatta, Karnataka, India","institution_ids":["https://openalex.org/I178319760"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110221432","display_name":"YL Ramachandra","orcid":null},"institutions":[{"id":"https://openalex.org/I178319760","display_name":"Kuvempu University","ror":"https://ror.org/014arsg56","country_code":"IN","type":"education","lineage":["https://openalex.org/I178319760"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"YL Ramachandra","raw_affiliation_strings":["Department of Biotechnology, Kuvempu University, Shankaraghatta, Karnataka, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Kuvempu University, Shankaraghatta, Karnataka, India","institution_ids":["https://openalex.org/I178319760"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024268602","display_name":"Akhilesh Pandey","orcid":"https://orcid.org/0000-0001-9943-6127"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Akhilesh Pandey","raw_affiliation_strings":["McKusick-Nathans Institute of Genetic Medicine and the Departments of Biological Chemistry, Pathology and Oncology, Johns Hopkins University, Baltimore, MD, 21205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McKusick-Nathans Institute of Genetic Medicine and the Departments of Biological Chemistry, Pathology and Oncology, Johns Hopkins University, Baltimore, MD, 21205, USA","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5066701356"],"corresponding_institution_ids":["https://openalex.org/I4210148697"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":10.4954,"has_fulltext":true,"cited_by_count":233,"citation_normalized_percentile":{"value":0.98998303,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"7","issue":"S5","first_page":"S19","last_page":"S19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.896399974822998,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.896399974822998,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.08229999989271164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6703568696975708},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6213943958282471},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5461122393608093},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5181607007980347},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.4998743534088135},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3803868889808655},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37109214067459106},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2728731632232666},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2234068512916565}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6703568696975708},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6213943958282471},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5461122393608093},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5181607007980347},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.4998743534088135},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3803868889808655},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37109214067459106},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2728731632232666},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2234068512916565},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008091","descriptor_name":"Literature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008091","descriptor_name":"Literature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008091","descriptor_name":"Literature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017150","descriptor_name":"Public Sector","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017150","descriptor_name":"Public Sector","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017150","descriptor_name":"Public Sector","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030342","descriptor_name":"Genetic Diseases, Inborn","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030342","descriptor_name":"Genetic Diseases, Inborn","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030342","descriptor_name":"Genetic Diseases, Inborn","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-7-s5-s19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-s5-s19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-S5-S19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17254303","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17254303","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/178007","is_oa":true,"landing_page_url":"https://scholarbank.nus.edu.sg/handle/10635/178007","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Unpaywall 20201031","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:d7c726b1d6a14006b3bf55b2a4beffd7","is_oa":true,"landing_page_url":"https://doaj.org/article/d7c726b1d6a14006b3bf55b2a4beffd7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss Suppl 5, p S19 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1764475","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1764475","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-s5-s19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-s5-s19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-S5-S19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2988812681","display_name":null,"funder_award_id":"U54 RR020839","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4857829083","display_name":null,"funder_award_id":"RR020839","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320310145","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2060460012.pdf","grobid_xml":"https://content.openalex.org/works/W2060460012.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1499561015","https://openalex.org/W1560424863","https://openalex.org/W1969289070","https://openalex.org/W1982428412","https://openalex.org/W1994803330","https://openalex.org/W2006933206","https://openalex.org/W2014155536","https://openalex.org/W2031407766","https://openalex.org/W2036618934","https://openalex.org/W2040411864","https://openalex.org/W2045131140","https://openalex.org/W2052033556","https://openalex.org/W2101181377","https://openalex.org/W2111220881","https://openalex.org/W2115504660","https://openalex.org/W2117035344","https://openalex.org/W2117073914","https://openalex.org/W2117506397","https://openalex.org/W2130687290","https://openalex.org/W2133167066","https://openalex.org/W2134672568","https://openalex.org/W2134711219","https://openalex.org/W2134878850","https://openalex.org/W2145889895","https://openalex.org/W2147714160","https://openalex.org/W2152653671","https://openalex.org/W2155723007","https://openalex.org/W2158719879","https://openalex.org/W2159675211","https://openalex.org/W2166043581","https://openalex.org/W2172049947"],"related_works":["https://openalex.org/W4399124891","https://openalex.org/W2033835987","https://openalex.org/W4248750016","https://openalex.org/W4205092877","https://openalex.org/W1824784554","https://openalex.org/W2086443788","https://openalex.org/W3141940143","https://openalex.org/W1561860948","https://openalex.org/W1979295894","https://openalex.org/W2267080198"],"abstract_inverted_index":{"BACKGROUND:":[0],"Protein-protein":[1],"interaction":[2],"(PPI)":[3],"databases":[4,33,59,145],"have":[5],"become":[6],"a":[7,40],"major":[8,55],"resource":[9],"for":[10,24,66,139,223],"investigating":[11],"biological":[12],"networks":[13],"and":[14,46,78,93,101,128,159,199],"pathways":[15],"in":[16,43,91,95,99,103,117,120,123,126,130,143,148,151,154,157,161,217,227,233],"cells.":[17],"A":[18],"number":[19,82,106,135],"of":[20,31,48,83,107,136,169,175,188,229],"publicly":[21,56],"available":[22,57],"repositories":[23,178],"human":[25,67,86],"PPIs":[26,87,141,176],"are":[27],"currently":[28],"available.":[29],"Each":[30],"these":[32],"has":[34],"their":[35,49,224,234],"own":[36],"unique":[37],"features":[38],"with":[39,110],"large":[41],"variation":[42],"the":[44,54,131,140,144,162,167,186,202,219,230],"type":[45],"depth":[47],"annotations.":[50],"RESULTS:":[51],"We":[52,207],"analyzed":[53],"primary":[58],"that":[60,173,209],"contain":[61],"literature":[62,137],"curated":[63],"PPI":[64],"information":[65,203],"proteins.":[68],"This":[69],"included":[70,142],"BIND,":[71],"DIP,":[72],"HPRD,":[73,118,149],"IntAct,":[74,124,155],"MINT,":[75,121,152],"MIPS,":[76],"PDZBase":[77,92],"Reactome":[79],"databases.":[80,133,164],"The":[81,105,134],"binary":[84],"non-redundant":[85],"ranged":[88],"from":[89],"101":[90],"346":[94],"MIPS":[96],"to":[97,177,205],"11,367":[98],"MINT":[100],"36,617":[102],"HPRD.":[104],"genes":[108],"annotated":[109],"at":[111,185],"least":[112],"one":[113],"interactor":[114],"was":[115,146],"9,427":[116],"4,975":[119],"4,614":[122],"3,887":[125],"BIND":[127,158],"<1,000":[129],"remaining":[132,163],"citations":[138],"43,634":[147],"11,480":[150],"10,331":[153],"8,020":[156],"<2,100":[160],"CONCLUSION:":[165],"Given":[166],"importance":[168],"PPIs,":[170],"we":[171],"suggest":[172],"submission":[174,190],"be":[179],"made":[180],"mandatory":[181],"by":[182],"scientific":[183],"journals":[184],"time":[187],"manuscript":[189],"as":[191],"this":[192],"will":[193,212],"minimize":[194],"annotation":[195],"errors,":[196],"promote":[197],"standardization":[198],"help":[200,213],"keep":[201],"up":[204],"date.":[206],"hope":[208],"our":[210],"analysis":[211],"guide":[214],"biomedical":[215],"scientists":[216],"selecting":[218],"most":[220],"appropriate":[221],"database":[222],"needs":[225],"especially":[226],"light":[228],"dramatic":[231],"differences":[232],"content.":[235]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":25},{"year":2012,"cited_by_count":13}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
