{"id":"https://openalex.org/W2015973145","doi":"https://doi.org/10.1186/1471-2105-7-s3-s1","title":"Proceedings of the Second International Symposium for Semantic Mining in Biomedicine","display_name":"Proceedings of the Second International Symposium for Semantic Mining in Biomedicine","publication_year":2006,"publication_date":"2006-11-01","ids":{"openalex":"https://openalex.org/W2015973145","doi":"https://doi.org/10.1186/1471-2105-7-s3-s1","mag":"2015973145"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-s3-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-s3-s1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-7-S3-S1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-7-S3-S1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["School of Computer Science, National Centre for Text Mining, Manchester Interdisciplinary Biocentre, University of Manchester, Oxford Road, M13 9PL, Manchester, UK","School of Computer Science, National Centre for Text Mining, Manchester Interdisciplinary Biocentre, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National Centre for Text Mining, Manchester Interdisciplinary Biocentre, University of Manchester, Oxford Road, M13 9PL, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, National Centre for Text Mining, Manchester Interdisciplinary Biocentre, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077378114","display_name":"Juliane Fluck","orcid":"https://orcid.org/0000-0003-1379-7023"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4923324","display_name":"Fraunhofer-Gesellschaft","ror":"https://ror.org/05hkkdn48","country_code":"DE","type":"government","lineage":["https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Juliane Fluck","raw_affiliation_strings":["Fraunhofer Institute SCAI, Schloss Birlinghoven, 53754 St, Augustin, Germany","Fraunhofer Institute SCAI, Schloss Birlinghoven, Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute SCAI, Schloss Birlinghoven, 53754 St, Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Fraunhofer Institute SCAI, Schloss Birlinghoven, Augustin, Germany","institution_ids":["https://openalex.org/I4923324"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5077378114","https://openalex.org/A5077976343"],"corresponding_institution_ids":["https://openalex.org/I28407311","https://openalex.org/I4210098248","https://openalex.org/I4923324"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":0.2541,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.54399355,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"7","issue":"S3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9631999731063843,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7569091320037842},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.7261176705360413},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.6611801981925964},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6125604510307312},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.5866329073905945},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5318130254745483},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5235897302627563},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5069029927253723},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.48975610733032227},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.4451269507408142},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44180259108543396},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.43574395775794983},{"id":"https://openalex.org/keywords/semantic-annotation","display_name":"Semantic annotation","score":0.4217720627784729},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.41425076127052307},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3336881399154663},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.31127411127090454},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3051913380622864},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.2469247281551361},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.20179829001426697},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1661018431186676},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.1104530394077301}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7569091320037842},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.7261176705360413},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.6611801981925964},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6125604510307312},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.5866329073905945},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5318130254745483},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5235897302627563},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5069029927253723},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.48975610733032227},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.4451269507408142},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44180259108543396},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.43574395775794983},{"id":"https://openalex.org/C2985727698","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Semantic annotation","level":3,"score":0.4217720627784729},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.41425076127052307},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3336881399154663},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.31127411127090454},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3051913380622864},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.2469247281551361},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.20179829001426697},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1661018431186676},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.1104530394077301},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-7-s3-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-s3-s1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-7-S3-S1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:fraunhofer.de:N-105042","is_oa":false,"landing_page_url":"http://publica.fraunhofer.de/documents/N-105042.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"Conference Paper"},{"id":"pmh:oai:publica.fraunhofer.de:publica/353718","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/353718","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"},{"id":"pmh:oai:pubmedcentral.nih.gov:1764445","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1764445","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-s3-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-s3-s1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-7-S3-S1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2015973145.pdf","grobid_xml":"https://content.openalex.org/works/W2015973145.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W153154704","https://openalex.org/W1553529581","https://openalex.org/W1976316416","https://openalex.org/W1994306321","https://openalex.org/W2048140075","https://openalex.org/W2056119436","https://openalex.org/W2085726934","https://openalex.org/W2085960736","https://openalex.org/W2152183901","https://openalex.org/W2163107094","https://openalex.org/W2187581821","https://openalex.org/W6633075837"],"related_works":["https://openalex.org/W2064177607","https://openalex.org/W1801798365","https://openalex.org/W2122194007","https://openalex.org/W2157272674","https://openalex.org/W2103987857","https://openalex.org/W2068800403","https://openalex.org/W116469150","https://openalex.org/W2914601452","https://openalex.org/W2052511096","https://openalex.org/W3080628425"],"abstract_inverted_index":{"With":[0],"an":[1,51],"overwhelming":[2],"amount":[3,106],"of":[4,53,66,107,119,152,168,181],"biomedical":[5,70,108],"knowledge":[6,76,101,162],"recorded":[7],"in":[8,20,43,78,103],"texts,":[9,109],"it":[10],"is":[11,16,81],"not":[12],"surprising":[13],"that":[14,164],"there":[15,48,80],"so":[17],"much":[18],"interest":[19],"techniques":[21,114],"which":[22,86,115],"can":[23],"identify,":[24],"extract,":[25],"manage,":[26],"integrate":[27,89],"and":[28,32,56,88,96,126,154,160],"exploit":[29],"this":[30,41],"knowledge,":[31],"moreover":[33],"discover":[34,100],"new,":[35],"hidden":[36,102],"or":[37],"unsuspected":[38],"knowledge.":[39],"For":[40],"reason,":[42],"the":[44,64,104,166,169,178],"past":[45],"five":[46],"years,":[47],"has":[49],"been":[50],"upsurge":[52],"research":[54],"papers":[55],"overviews":[57],"[":[58],"1":[59],"\u2013":[60],"5":[61],"]":[62],"on":[63],"topic":[65],"text":[67,112,172],"mining":[68,113,130,143,173],"from":[69,91],"literature.":[71],"In":[72,137],"order":[73,138],"to":[74,117,139,176,184],"facilitate":[75],"discovery":[77],"biomedicine":[79],"a":[82],"need":[83,111],"for":[84],"approaches":[85],"harvest":[87],"information":[90],"text,":[92],"biological":[93],"databases,":[94],"ontologies":[95,159],"terminological":[97],"resources.":[98],"To":[99],"large":[105],"we":[110],"go":[116],"levels":[118,133,151],"linguistic":[120,153],"processing":[121],"deeper":[122],"than":[123],"simple":[124],"lexical":[125],"syntactic":[127],"processing.":[128],"Text":[129],"beyond":[131],"surface":[132],"requires":[134],"semantic":[135,142,155],"information.":[136],"carry":[140],"out":[141],"certain":[144],"prerequisites":[145],"are":[146],"assumed":[147],"such":[148],"as":[149],"rich":[150],"annotation":[156],"supported":[157],"by":[158],"other":[161],"sources":[163],"provide":[165],"semantics":[167],"annotation.":[170],"Semantic":[171],"enables":[174],"us":[175],"capture":[177],"relevant":[179],"content":[180],"documents":[182],"according":[183],"user":[185],"needs.":[186]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
